1AUSS

Activated unliganded spinach rubisco
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
123
structure length
123
Chain Sequence
MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase (carbon-carbon)
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
publication title Structure of a product complex of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase.
pubmed doi rcsb
total genus 27
structure length 123
sequence length 123
chains with identical sequence T, U, V
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 1995-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1ausS00
1RCXC 1BXNI 1UPPI 1RBLI 2VDII 1UZDC 3ZXWB 1RLCS 1WDDS 1UWAC 1SVDM 4F0HB 2V68I 2V67I 4MKVS 1RCOC 8RUCI 3AXKS 3AXMS 1EJ7S 1RSCI 4F0KB 1IR1S 1UW9C 1RXOC 2YBVB 1RLDS 1UZHC 1AUSS 2V69I 3RUBS 1RBOC 1IWAB 1UPMC 4F0MB 4HHHS 1IR21 2VDHI 2V63I 1BWVS 4RUBS 2V6AI 1GK8I 1AA1C
chains in the Genus database with same CATH superfamily
1RCXC 1BXNI 1UPPI 1RBLI 1MZPA 2VDII 3U4MA 1UZDC 3TG8A 4QGBA 3ZXWB 1RLCS 4REOA 1WDDS 1I2AA 1SVDM 1UWAC 4F0HB 2V68I 2V67I 3FPNA 5DM60 4MKVS 1RCOC 4QG3A 8RUCI 3AXKS 3AXMS 1EJ7S 1RSCI 4F0KB 1IR1S 1UW9C 1RXOC 1CJSA 2YBVB 4LQ4A 1AD2A 4DFCB 2HW8A 1RLDS 1UZHC 1AUSS 4F9TA 4QVIA 2V69I 1DWUA 3UMYA 3RUBS 1RBOC 1IWAB 3U56A 1UPMC 2DFXI 5DM70 3ZQJA 4F0MB 4HHHS 1IR21 2VDHI 3QOYA 1U63A 1ZHOA 2V63I 1BWVS 4RUBS 2V6AI 1GK8I 1AA1C 2FHZA
chains in the Genus database with same CATH topology
1RCXC 1BXNI 1UPPI 1RBLI 2VDII 1UZDC 3ZXWB 1RLCS 1WDDS 1UWAC 1SVDM 4F0HB 2V68I 2V67I 4MKVS 1RCOC 8RUCI 3AXKS 3AXMS 1EJ7S 1RSCI 4F0KB 1IR1S 1UW9C 1RXOC 2YBVB 1RLDS 1UZHC 1AUSS 2V69I 3RUBS 1RBOC 1IWAB 1UPMC 4F0MB 4HHHS 1IR21 2VDHI 2V63I 1BWVS 4RUBS 2V6AI 1GK8I 1AA1C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RCX C;  1BXN I;  1UPP I;  1RBL I;  2VDI I;  1UZD C;  3ZXW B;  1RLC S;  1WDD S;  1UWA C;  1SVD M;  4F0H B;  2V68 I;  2V67 I;  4MKV S;  1RCO C;  8RUC I;  3AXK S;  3AXM S;  1EJ7 S;  1RSC I;  4F0K B;  1IR1 S;  1UW9 C;  1RXO C;  2YBV B;  1RLD S;  1UZH C;  1AUS S;  2V69 I;  3RUB S;  1RBO C;  1IWA B;  1UPM C;  4F0M B;  4HHH S;  1IR2 1;  2VDH I;  2V63 I;  1BWV S;  4RUB S;  2V6A I;  1GK8 I;  1AA1 C; 
#chains in the Genus database with same CATH topology
 1RCX C;  1BXN I;  1UPP I;  1RBL I;  1MZP A;  2VDI I;  3U4M A;  1UZD C;  3TG8 A;  4QGB A;  3ZXW B;  1RLC S;  4REO A;  1WDD S;  1I2A A;  1SVD M;  1UWA C;  4F0H B;  2V68 I;  2V67 I;  3FPN A;  5DM6 0;  4MKV S;  1RCO C;  4QG3 A;  8RUC I;  3AXK S;  3AXM S;  1EJ7 S;  1RSC I;  4F0K B;  1IR1 S;  1UW9 C;  1RXO C;  1CJS A;  2YBV B;  4LQ4 A;  1AD2 A;  4DFC B;  2HW8 A;  1RLD S;  1UZH C;  1AUS S;  4F9T A;  4QVI A;  2V69 I;  1DWU A;  3UMY A;  3RUB S;  1RBO C;  1IWA B;  3U56 A;  1UPM C;  2DFX I;  5DM7 0;  3ZQJ A;  4F0M B;  4HHH S;  1IR2 1;  2VDH I;  3QOY A;  1U63 A;  1ZHO A;  2V63 I;  1BWV S;  4RUB S;  2V6A I;  1GK8 I;  1AA1 C;  2FHZ A; 
#chains in the Genus database with same CATH homology
 1RCX C;  1BXN I;  1UPP I;  1RBL I;  2VDI I;  1UZD C;  3ZXW B;  1RLC S;  1WDD S;  1UWA C;  1SVD M;  4F0H B;  2V68 I;  2V67 I;  4MKV S;  1RCO C;  8RUC I;  3AXK S;  3AXM S;  1EJ7 S;  1RSC I;  4F0K B;  1IR1 S;  1UW9 C;  1RXO C;  2YBV B;  1RLD S;  1UZH C;  1AUS S;  2V69 I;  3RUB S;  1RBO C;  1IWA B;  1UPM C;  4F0M B;  4HHH S;  1IR2 1;  2VDH I;  2V63 I;  1BWV S;  4RUB S;  2V6A I;  1GK8 I;  1AA1 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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