1AVCA

Bovine annexin vi (calcium-bound)
Total Genus 260
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
260
sequence length
662
structure length
642
Chain Sequence
YRGSIRDFPDFNPSQDAETLYNAMKGFGSDKEAIINLITSRSNKQRQEICQNYKSLYGKDLIADLKYELTGKFERLIVGLMRPPAYADAKEIKDAISGIGTDEKCLIEILASRTNEQIHQLVAAYKDAYERDLEADITGDTSGHFRKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGDFEKLMLAVVKCIRSTAEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKKTLLKLCGGQFFPEAAQVAYQMWELSAVARVELKGTVRPAGDFNPDADAKALRKAMKGLGTDEDTIIDIITHRSNAQRQQIRQTFKSHFGRDLMADLKSELSGDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIQAINKAYKEDYHKTLEDALSSDTSGHFKRILISLATGNREEGGEDRERAREDAQVAAEILTRFMMILCTRSYPDLRRVFQEFVKMTNYDVEHTIKKEMSGDVRDVFVAIVQSVKNKPLFFADKLYKSMKGAGTEEKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGHFLKALLAICGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ANNEXIN VI
publication title Crystal structure of bovine annexin VI in a calcium-bound state.
pubmed doi rcsb
molecule tags Calcium/phospholipid-binding protein
total genus 260
structure length 642
sequence length 662
ec nomenclature
pdb deposition date 1997-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1avcA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1avcA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1avcA08
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1avcA05
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1avcA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1avcA06
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1avcA03
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1avcA07
4EVHA 1N42A 1BC1A 1AOWA 1I4AA 1HVFA 1YIIA 1ANNA 2HYUA 1YJ0A 1A8AA 1DK5A 4EVFA 1YCNA 2IE7A 1HAKA 2IICA 1AVRA 1BCWA 2XO3A 4HREA 1HM6A 4MDUA 1A8BA 1W45A 1N44A 2H0MA 4X9PA 2ZHIA 1BO9A 1BC3A 1HVDA 1W3WA 1DM5A 1W7BA 2HYWA 1ALAA 2H0LA 2H0KA 1ANXA 1ANWA 1BCZA 4MDVA 2HYVA 2ZHJA 2XO2A 2IE6A 1BCYA 1MCXA 1HVGA 1AVCA 1AVHA 2Q4CA 3BRXA 1M9IA 1SAVA 1N41A 1G5NA 2RANA 2ZOCA 1AXNA 1N00A 1BC0A 1AIIA 1AEIA 1HVEA 2II2A 1XJLA
chains in the Genus database with same CATH superfamily
4EVHA 1R4AE 1R8ME 2HYUA 2R09A 4Q2SA 4JK1X 1AVRA 4HREA 3SWVA 2HYWA 2H0KA 2HYVA 1MCXA 1AVHA 1AVCA 4D7RA 4FHRB 2RANA 2ZOCA 1Q8DA 1AXNA 3LTLA 4OIYA 1BC0A 2II2A 1BC1A 1BC9A 1HVFA 1UPTB 1YIIA 1ANNA 1LKVX 1R8SE 1A8AA 1YJ0A 3ABQA 1YCNA 2IE7A 2IICA 1XT0B 4JMIA 4C0AA 3ANYA 1DM5A 4KN7X 4C7PA 3ABRA 1ALAA 2R0DA 1ANXA 1ANWA 1BCZA 4MDVA 2ZHJA 1QC7A 1BCYA 3USYA 1C1KA 1G5NA 1N00A 3HJLA 1AEIA 2HSNA 1XJLA 3AJCA 1PBVA 4JMOA 4EVFA 4FQ0C 1HAKA 2XO3A 2OY9A 1W45A 3L8NA 4Z21A 2H0MA 4X9PA 4D7QA 1BC3A 1W3WA 4JXHA 1HVGA 4L5MA 1SAVA 1N41A 3TW5A 3USWA 1RE0B 1HVEA 4A4PA 1I4AA 1AOWA 1YGMA 3SOHB 1DK5A 3AO0A 4JWLA 1BCWA 3ABSA 1HM6A 4MDUA 1A8BA 2QEZA 1N44A 2VXGA 4KMUX 1BO9A 2ZHIA 1R8QE 1HVDA 1XSZA 1W7BA 2H0LA 2XO2A 2IE6A 2Q4CA 1KU1A 3BRXA 1M9IA 4KN4X 1S9DE 2K6XA 3ABOA 1AIIA 1N42A
chains in the Genus database with same CATH topology
4EVHA 1N42A 1BC1A 1AOWA 1I4AA 1HVFA 1YIIA 1ANNA 2HYUA 1YJ0A 1A8AA 1DK5A 4EVFA 1YCNA 2IE7A 1HAKA 2IICA 1AVRA 1BCWA 2XO3A 4HREA 1HM6A 4MDUA 1A8BA 1W45A 1N44A 2H0MA 4X9PA 2ZHIA 1BO9A 1BC3A 1HVDA 1W3WA 1DM5A 1W7BA 2HYWA 1ALAA 2H0LA 2H0KA 1ANXA 1ANWA 1BCZA 4MDVA 2HYVA 2ZHJA 2XO2A 2IE6A 1BCYA 1MCXA 1HVGA 1AVCA 1AVHA 2Q4CA 3BRXA 1M9IA 1SAVA 1N41A 1G5NA 2RANA 2ZOCA 1AXNA 1N00A 1BC0A 1AIIA 1AEIA 1HVEA 2II2A 1XJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EVH A;  1N42 A;  1BC1 A;  1AOW A;  1I4A A;  1HVF A;  1YII A;  1ANN A;  2HYU A;  1YJ0 A;  1A8A A;  1DK5 A;  4EVF A;  1YCN A;  2IE7 A;  1HAK A;  2IIC A;  1AVR A;  1BCW A;  2XO3 A;  4HRE A;  1HM6 A;  4MDU A;  1A8B A;  1W45 A;  1N44 A;  2H0M A;  4X9P A;  2ZHI A;  1BO9 A;  1BC3 A;  1HVD A;  1W3W A;  1DM5 A;  1W7B A;  2HYW A;  1ALA A;  2H0L A;  2H0K A;  1ANX A;  1ANW A;  1BCZ A;  4MDV A;  2HYV A;  2ZHJ A;  2XO2 A;  2IE6 A;  1BCY A;  1MCX A;  1HVG A;  1AVC A;  1AVH A;  2Q4C A;  3BRX A;  1M9I A;  1SAV A;  1N41 A;  1G5N A;  2RAN A;  2ZOC A;  1AXN A;  1N00 A;  1BC0 A;  1AII A;  1AEI A;  1HVE A;  2II2 A;  1XJL A; 
#chains in the Genus database with same CATH topology
 4EVH A;  1R4A E;  1R8M E;  2HYU A;  2R09 A;  4Q2S A;  4JK1 X;  1AVR A;  4HRE A;  3SWV A;  2HYW A;  2H0K A;  2HYV A;  1MCX A;  1AVH A;  1AVC A;  4D7R A;  4FHR B;  2RAN A;  2ZOC A;  1Q8D A;  1AXN A;  3LTL A;  4OIY A;  1BC0 A;  2II2 A;  1BC1 A;  1BC9 A;  1HVF A;  1UPT B;  1YII A;  1ANN A;  1LKV X;  1R8S E;  1A8A A;  1YJ0 A;  3ABQ A;  1YCN A;  2IE7 A;  2IIC A;  1XT0 B;  4JMI A;  4C0A A;  3ANY A;  1DM5 A;  4KN7 X;  4C7P A;  3ABR A;  1ALA A;  2R0D A;  1ANX A;  1ANW A;  1BCZ A;  4MDV A;  2ZHJ A;  1QC7 A;  1BCY A;  3USY A;  1C1K A;  1G5N A;  1N00 A;  3HJL A;  1AEI A;  2HSN A;  1XJL A;  3AJC A;  1PBV A;  4JMO A;  4EVF A;  4FQ0 C;  1HAK A;  2XO3 A;  2OY9 A;  1W45 A;  3L8N A;  4Z21 A;  2H0M A;  4X9P A;  4D7Q A;  1BC3 A;  1W3W A;  4JXH A;  1HVG A;  4L5M A;  1SAV A;  1N41 A;  3TW5 A;  3USW A;  1RE0 B;  1HVE A;  4A4P A;  1I4A A;  1AOW A;  1YGM A;  3SOH B;  1DK5 A;  3AO0 A;  4JWL A;  1BCW A;  3ABS A;  1HM6 A;  4MDU A;  1A8B A;  2QEZ A;  1N44 A;  2VXG A;  4KMU X;  1BO9 A;  2ZHI A;  1R8Q E;  1HVD A;  1XSZ A;  1W7B A;  2H0L A;  2XO2 A;  2IE6 A;  2Q4C A;  1KU1 A;  3BRX A;  1M9I A;  4KN4 X;  1S9D E;  2K6X A;  3ABO A;  1AII A;  1N42 A; 
#chains in the Genus database with same CATH homology
 4EVH A;  1N42 A;  1BC1 A;  1AOW A;  1I4A A;  1HVF A;  1YII A;  1ANN A;  2HYU A;  1YJ0 A;  1A8A A;  1DK5 A;  4EVF A;  1YCN A;  2IE7 A;  1HAK A;  2IIC A;  1AVR A;  1BCW A;  2XO3 A;  4HRE A;  1HM6 A;  4MDU A;  1A8B A;  1W45 A;  1N44 A;  2H0M A;  4X9P A;  2ZHI A;  1BO9 A;  1BC3 A;  1HVD A;  1W3W A;  1DM5 A;  1W7B A;  2HYW A;  1ALA A;  2H0L A;  2H0K A;  1ANX A;  1ANW A;  1BCZ A;  4MDV A;  2HYV A;  2ZHJ A;  2XO2 A;  2IE6 A;  1BCY A;  1MCX A;  1HVG A;  1AVC A;  1AVH A;  2Q4C A;  3BRX A;  1M9I A;  1SAV A;  1N41 A;  1G5N A;  2RAN A;  2ZOC A;  1AXN A;  1N00 A;  1BC0 A;  1AII A;  1AEI A;  1HVE A;  2II2 A;  1XJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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