1AW6A

Gal4 (cd), nmr, 24 structures
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
43
structure length
43
Chain Sequence
MKLLSSIEQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulation
molecule keywords GAL4 (CD)
publication title Refined solution structure of the DNA-binding domain of GAL4 and use of 3J(113Cd,1H) in structure determination.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 4
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 1997-10-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.240.10 Few Secondary Structures Irregular CD2-Gal4 Zn(2)-C6 fungal-type DNA-binding domain 1aw6A00
1D66A 1AJYA 1PYCA 3ALCA 1HWTC 1F5EP 2ERGA 1PYIA 1ZMEC 2EREA 2ER8A 2HAPC 1QP9A 3COQA 1AW6A 2ALCA 1F4SP
chains in the Genus database with same CATH superfamily
1D66A 1AJYA 1PYCA 3ALCA 1HWTC 1F5EP 2ERGA 1PYIA 1ZMEC 2EREA 2ER8A 2HAPC 1QP9A 3COQA 1AW6A 2ALCA 1F4SP
chains in the Genus database with same CATH topology
1D66A 1AJYA 1PYCA 3ALCA 1HWTC 1F5EP 2ERGA 1PYIA 1ZMEC 2EREA 2ER8A 2HAPC 1QP9A 3COQA 1AW6A 2ALCA 1F4SP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D66 A;  1AJY A;  1PYC A;  3ALC A;  1HWT C;  1F5E P;  2ERG A;  1PYI A;  1ZME C;  2ERE A;  2ER8 A;  2HAP C;  1QP9 A;  3COQ A;  1AW6 A;  2ALC A;  1F4S P; 
#chains in the Genus database with same CATH topology
 1D66 A;  1AJY A;  1PYC A;  3ALC A;  1HWT C;  1F5E P;  2ERG A;  1PYI A;  1ZME C;  2ERE A;  2ER8 A;  2HAP C;  1QP9 A;  3COQ A;  1AW6 A;  2ALC A;  1F4S P; 
#chains in the Genus database with same CATH homology
 1D66 A;  1AJY A;  1PYC A;  3ALC A;  1HWT C;  1F5E P;  2ERG A;  1PYI A;  1ZME C;  2ERE A;  2ER8 A;  2HAP C;  1QP9 A;  3COQ A;  1AW6 A;  2ALC A;  1F4S P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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