1AXXA

The solution structure of oxidized rat microsomal cytochrome b5, nmr, 19 structures
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
94
structure length
94
Chain Sequence
DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIAKPSETL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The solution structure of oxidized rat microsomal cytochrome b5.
pubmed doi rcsb
molecule tags Electron transport
source organism Rattus norvegicus
molecule keywords CYTOCHROME B5
total genus 16
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 1997-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1axxA00
1EUEA 2I96A 4B8NA 1I87A 1M59A 1BFXA 1ICCA 1T0GA 2AXXA 3MUSA 1B5MA 1AQAA 1I8CA 1M20A 1ES1A 1M2IA 1MNYA 1CYOA 1LTDA 1MJ4A 3LF5A 1KBIA 2I89A 1DO9A 1B5BA 2OZ0A 1BLVA 1LR6A 2KEOA 1IB7A 3OZZB 1U9UA 1SH4A 1LDCA 3KS0A 1CXYA 1FCBA 3X35A 1EHBA 1AWPA 1I5UA 1IEUA 1LQXA 1B5AA 1NX7A 1J03A 1HKOA 1X3XA 1LCOA 2IBJA 3X32A 1M2MA 1SOXA 3X34A 4HILA 2M33A 1JEXA 1LJ0A 1U9MA 1F03A 1IETA 1F04A 4HINA 3X33A 3NERA 1AW3A 1AXXA 4X8YA 1J0QA
chains in the Genus database with same CATH superfamily
1EUEA 2I96A 4B8NA 1I87A 1M59A 1BFXA 1ICCA 1T0GA 2AXXA 3MUSA 1B5MA 1AQAA 1I8CA 1M20A 1ES1A 1M2IA 1MNYA 1CYOA 1LTDA 1MJ4A 3LF5A 1KBIA 2I89A 1DO9A 1B5BA 2OZ0A 1BLVA 1LR6A 2KEOA 1IB7A 3OZZB 1U9UA 1SH4A 1LDCA 3KS0A 1CXYA 1FCBA 3X35A 1EHBA 1AWPA 1I5UA 1IEUA 1LQXA 1B5AA 1NX7A 1J03A 1HKOA 1X3XA 1LCOA 2IBJA 3X32A 1M2MA 1SOXA 3X34A 4HILA 2M33A 1JEXA 1LJ0A 1U9MA 1F03A 1IETA 1F04A 4HINA 3X33A 3NERA 1AW3A 1AXXA 4X8YA 1J0QA
chains in the Genus database with same CATH topology
1EUEA 2I96A 4B8NA 1I87A 1M59A 1BFXA 1ICCA 1T0GA 2AXXA 3MUSA 1B5MA 1AQAA 1I8CA 1M20A 1ES1A 1M2IA 1MNYA 1CYOA 1LTDA 1MJ4A 3LF5A 1KBIA 2I89A 1DO9A 1B5BA 2OZ0A 1BLVA 1LR6A 2KEOA 1IB7A 3OZZB 1U9UA 1SH4A 1LDCA 3KS0A 1CXYA 1FCBA 3X35A 1EHBA 1AWPA 1I5UA 1IEUA 1LQXA 1B5AA 1NX7A 1J03A 1HKOA 1X3XA 1LCOA 2IBJA 3X32A 1M2MA 1SOXA 3X34A 4HILA 2M33A 1JEXA 1LJ0A 1U9MA 1F03A 1IETA 1F04A 4HINA 3X33A 3NERA 1AW3A 1AXXA 4X8YA 1J0QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EUE A;  2I96 A;  4B8N A;  1I87 A;  1M59 A;  1BFX A;  1ICC A;  1T0G A;  2AXX A;  3MUS A;  1B5M A;  1AQA A;  1I8C A;  1M20 A;  1ES1 A;  1M2I A;  1MNY A;  1CYO A;  1LTD A;  1MJ4 A;  3LF5 A;  1KBI A;  2I89 A;  1DO9 A;  1B5B A;  2OZ0 A;  1BLV A;  1LR6 A;  2KEO A;  1IB7 A;  3OZZ B;  1U9U A;  1SH4 A;  1LDC A;  3KS0 A;  1CXY A;  1FCB A;  3X35 A;  1EHB A;  1AWP A;  1I5U A;  1IEU A;  1LQX A;  1B5A A;  1NX7 A;  1J03 A;  1HKO A;  1X3X A;  1LCO A;  2IBJ A;  3X32 A;  1M2M A;  1SOX A;  3X34 A;  4HIL A;  2M33 A;  1JEX A;  1LJ0 A;  1U9M A;  1F03 A;  1IET A;  1F04 A;  4HIN A;  3X33 A;  3NER A;  1AW3 A;  1AXX A;  4X8Y A;  1J0Q A; 
#chains in the Genus database with same CATH topology
 1EUE A;  2I96 A;  4B8N A;  1I87 A;  1M59 A;  1BFX A;  1ICC A;  1T0G A;  2AXX A;  3MUS A;  1B5M A;  1AQA A;  1I8C A;  1M20 A;  1ES1 A;  1M2I A;  1MNY A;  1CYO A;  1LTD A;  1MJ4 A;  3LF5 A;  1KBI A;  2I89 A;  1DO9 A;  1B5B A;  2OZ0 A;  1BLV A;  1LR6 A;  2KEO A;  1IB7 A;  3OZZ B;  1U9U A;  1SH4 A;  1LDC A;  3KS0 A;  1CXY A;  1FCB A;  3X35 A;  1EHB A;  1AWP A;  1I5U A;  1IEU A;  1LQX A;  1B5A A;  1NX7 A;  1J03 A;  1HKO A;  1X3X A;  1LCO A;  2IBJ A;  3X32 A;  1M2M A;  1SOX A;  3X34 A;  4HIL A;  2M33 A;  1JEX A;  1LJ0 A;  1U9M A;  1F03 A;  1IET A;  1F04 A;  4HIN A;  3X33 A;  3NER A;  1AW3 A;  1AXX A;  4X8Y A;  1J0Q A; 
#chains in the Genus database with same CATH homology
 1EUE A;  2I96 A;  4B8N A;  1I87 A;  1M59 A;  1BFX A;  1ICC A;  1T0G A;  2AXX A;  3MUS A;  1B5M A;  1AQA A;  1I8C A;  1M20 A;  1ES1 A;  1M2I A;  1MNY A;  1CYO A;  1LTD A;  1MJ4 A;  3LF5 A;  1KBI A;  2I89 A;  1DO9 A;  1B5B A;  2OZ0 A;  1BLV A;  1LR6 A;  2KEO A;  1IB7 A;  3OZZ B;  1U9U A;  1SH4 A;  1LDC A;  3KS0 A;  1CXY A;  1FCB A;  3X35 A;  1EHB A;  1AWP A;  1I5U A;  1IEU A;  1LQX A;  1B5A A;  1NX7 A;  1J03 A;  1HKO A;  1X3X A;  1LCO A;  2IBJ A;  3X32 A;  1M2M A;  1SOX A;  3X34 A;  4HIL A;  2M33 A;  1JEX A;  1LJ0 A;  1U9M A;  1F03 A;  1IET A;  1F04 A;  4HIN A;  3X33 A;  3NER A;  1AW3 A;  1AXX A;  4X8Y A;  1J0Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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