1AY2A

Structure of the fiber-forming protein pilin at 2.6 angstroms resolution
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
157
structure length
157
Chain Sequence
TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRDNFDAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords TYPE 4 PILIN
publication title Structure of the fibre-forming protein pilin at 2.6 A resolution.
pubmed doi rcsb
total genus 45
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 1997-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 1ay2A00
5JW8A 1OQWA 1X6PA 3SOJA 1X6YA 2M7GA 2PY0A 2KEPA 1X6ZA 3SOKA 1DZOA 2PILA 3FU1A 2HI2A 1QVEA 1X6RA 4V1JA 1X6QA 1AY2A 3G20A 1T92A 3GN9A 4LW9A 1RG0A 1X6XX 3JZZA 1HPWA 3JYZA
chains in the Genus database with same CATH superfamily
5JW8A 1VAJA 1OQWA 1X6PA 3SOJA 1X6YA 2M7GA 2PY0A 2KEPA 1X6ZA 3SOKA 1DZOA 2PILA 3FU1A 1ZQ7A 2HI2A 3U9SA 1QVEA 1X6RA 4V1JA 1X6QA 2M3KA 1AY2A 3G20A 1T92A 3GN9A 4LW9A 1WSCA 3N6RA 3U9TA 1RG0A 1X6XX 3JZZA 1HPWA 3JYZA
chains in the Genus database with same CATH topology
5JW8A 1OQWA 1X6PA 3SOJA 1X6YA 2M7GA 2PY0A 2KEPA 1X6ZA 3SOKA 1DZOA 2PILA 3FU1A 2HI2A 3U9SA 1QVEA 1X6RA 4V1JA 1X6QA 2M3KA 1AY2A 3G20A 1T92A 3GN9A 4LW9A 3N6RA 3U9TA 1RG0A 1X6XX 3JZZA 1HPWA 3JYZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JW8 A;  1OQW A;  1X6P A;  3SOJ A;  1X6Y A;  2M7G A;  2PY0 A;  2KEP A;  1X6Z A;  3SOK A;  1DZO A;  2PIL A;  3FU1 A;  2HI2 A;  1QVE A;  1X6R A;  4V1J A;  1X6Q A;  1AY2 A;  3G20 A;  1T92 A;  3GN9 A;  4LW9 A;  1RG0 A;  1X6X X;  3JZZ A;  1HPW A;  3JYZ A; 
#chains in the Genus database with same CATH topology
 5JW8 A;  1VAJ A;  1OQW A;  1X6P A;  3SOJ A;  1X6Y A;  2M7G A;  2PY0 A;  2KEP A;  1X6Z A;  3SOK A;  1DZO A;  2PIL A;  3FU1 A;  1ZQ7 A;  2HI2 A;  3U9S A;  1QVE A;  1X6R A;  4V1J A;  1X6Q A;  2M3K A;  1AY2 A;  3G20 A;  1T92 A;  3GN9 A;  4LW9 A;  1WSC A;  3N6R A;  3U9T A;  1RG0 A;  1X6X X;  3JZZ A;  1HPW A;  3JYZ A; 
#chains in the Genus database with same CATH homology
 5JW8 A;  1OQW A;  1X6P A;  3SOJ A;  1X6Y A;  2M7G A;  2PY0 A;  2KEP A;  1X6Z A;  3SOK A;  1DZO A;  2PIL A;  3FU1 A;  2HI2 A;  3U9S A;  1QVE A;  1X6R A;  4V1J A;  1X6Q A;  2M3K A;  1AY2 A;  3G20 A;  1T92 A;  3GN9 A;  4LW9 A;  3N6R A;  3U9T A;  1RG0 A;  1X6X X;  3JZZ A;  1HPW A;  3JYZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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