1B2UD

Structural response to mutation at a protein-protein interface
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
90
structure length
90
Chain Sequence
MKKAVINGEQIRSISDLHQTLKKELALPEYYGENLAALWDCLTGWVEYPLVLEWRQFEQSKQLTENGAESVLQVFREAKAEGCDITIILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords PROTEIN (BARNASE)
publication title Structural response to mutation at a protein-protein interface.
pubmed doi rcsb
source organism Bacillus amyloliquefaciens
total genus 32
structure length 90
sequence length 90
chains with identical sequence E, F
ec nomenclature
pdb deposition date 1998-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF01337 Barstar Barstar (barnase inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.370.10 Alpha Beta 2-Layer Sandwich Barnase; Chain D Barstar-like 1b2uD00
1X1UD 2ZA4B 1X1XD 1X1WD 1A19A 1B27D 2CX6A 1BTBA 1AY7B 1B2SD 1X1YD 1BTAA 1BRSD 5F4CA 3DA7C 1BGSE 1B2UD 2HXXA 1B3SD 1AB7A
chains in the Genus database with same CATH superfamily
1X1UD 2ZA4B 1X1XD 2YK6A 2YK4A 1X1WD 1A19A 1B27D 2CX6A 1BTBA 1AY7B 1B2SD 1X1YD 1BTAA 1BRSD 5F4CA 3DA7C 2YK7A 2YK5A 1BGSE 1B2UD 2HXXA 1B3SD 1AB7A
chains in the Genus database with same CATH topology
1X1UD 2ZA4B 1X1XD 1X1WD 1A19A 1B27D 2CX6A 1BTBA 1AY7B 1B2SD 1X1YD 1BTAA 1BRSD 5F4CA 3DA7C 1BGSE 1B2UD 2HXXA 1B3SD 1AB7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X1U D;  2ZA4 B;  1X1X D;  1X1W D;  1A19 A;  1B27 D;  2CX6 A;  1BTB A;  1AY7 B;  1B2S D;  1X1Y D;  1BTA A;  1BRS D;  5F4C A;  3DA7 C;  1BGS E;  1B2U D;  2HXX A;  1B3S D;  1AB7 A; 
#chains in the Genus database with same CATH topology
 1X1U D;  2ZA4 B;  1X1X D;  2YK6 A;  2YK4 A;  1X1W D;  1A19 A;  1B27 D;  2CX6 A;  1BTB A;  1AY7 B;  1B2S D;  1X1Y D;  1BTA A;  1BRS D;  5F4C A;  3DA7 C;  2YK7 A;  2YK5 A;  1BGS E;  1B2U D;  2HXX A;  1B3S D;  1AB7 A; 
#chains in the Genus database with same CATH homology
 1X1U D;  2ZA4 B;  1X1X D;  1X1W D;  1A19 A;  1B27 D;  2CX6 A;  1BTB A;  1AY7 B;  1B2S D;  1X1Y D;  1BTA A;  1BRS D;  5F4C A;  3DA7 C;  1BGS E;  1B2U D;  2HXX A;  1B3S D;  1AB7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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