1B5MA

Rat outer mitochondrial membrane cytochrome b5
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
84
structure length
84
Chain Sequence
AVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title 13C NMR spectroscopic and X-ray crystallographic study of the role played by mitochondrial cytochrome b5 heme propionates in the electrostatic binding to cytochrome c.
pubmed doi rcsb
molecule tags Electron transport
source organism Rattus norvegicus
molecule keywords CYTOCHROME B5
total genus 23
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 1996-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1b5mA00
1T0GA 1HKOA 1M59A 1CYOA 1F03A 1MJ4A 3OZZB 1NX7A 1LDCA 1AW3A 1IEUA 1LJ0A 4HILA 1AWPA 2AXXA 1CXYA 1LCOA 1LR6A 1B5MA 1IETA 1J03A 1B5BA 1ICCA 2I89A 3LF5A 1SOXA 3MUSA 3X33A 1B5AA 4B8NA 1JEXA 1LTDA 1FCBA 1F04A 1I87A 1U9UA 1IB7A 2M33A 2OZ0A 1EHBA 1BFXA 1ES1A 1M2IA 1M20A 1AXXA 2KEOA 1M2MA 1X3XA 1I5UA 1MNYA 2I96A 1J0QA 3KS0A 1SH4A 1I8CA 4HINA 3X34A 1KBIA 1U9MA 1DO9A 3NERA 3X35A 1LQXA 4X8YA 1AQAA 1EUEA 2IBJA 1BLVA 3X32A
chains in the Genus database with same CATH superfamily
1T0GA 1HKOA 1M59A 1CYOA 1F03A 1MJ4A 3OZZB 1NX7A 1LDCA 1AW3A 1IEUA 1LJ0A 4HILA 1AWPA 2AXXA 1CXYA 1LCOA 1LR6A 1B5MA 1IETA 1J03A 1B5BA 1ICCA 2I89A 3LF5A 1SOXA 3MUSA 3X33A 1B5AA 4B8NA 1JEXA 1LTDA 1FCBA 1F04A 1I87A 1U9UA 1IB7A 2M33A 2OZ0A 1EHBA 1BFXA 1ES1A 1M2IA 1M20A 1AXXA 2KEOA 1M2MA 1X3XA 1I5UA 1MNYA 2I96A 1J0QA 3KS0A 1SH4A 1I8CA 4HINA 3X34A 1KBIA 1U9MA 1DO9A 3NERA 3X35A 1LQXA 4X8YA 1AQAA 1EUEA 2IBJA 1BLVA 3X32A
chains in the Genus database with same CATH topology
1T0GA 1HKOA 1M59A 1CYOA 1F03A 1MJ4A 3OZZB 1NX7A 1LDCA 1AW3A 1IEUA 1LJ0A 4HILA 1AWPA 2AXXA 1CXYA 1LCOA 1LR6A 1B5MA 1IETA 1J03A 1B5BA 1ICCA 2I89A 3LF5A 1SOXA 3MUSA 3X33A 1B5AA 4B8NA 1JEXA 1LTDA 1FCBA 1F04A 1I87A 1U9UA 1IB7A 2M33A 2OZ0A 1EHBA 1BFXA 1ES1A 1M2IA 1M20A 1AXXA 2KEOA 1M2MA 1X3XA 1I5UA 1MNYA 2I96A 1J0QA 3KS0A 1SH4A 1I8CA 4HINA 3X34A 1KBIA 1U9MA 1DO9A 3NERA 3X35A 1LQXA 4X8YA 1AQAA 1EUEA 2IBJA 1BLVA 3X32A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T0G A;  1HKO A;  1M59 A;  1CYO A;  1F03 A;  1MJ4 A;  3OZZ B;  1NX7 A;  1LDC A;  1AW3 A;  1IEU A;  1LJ0 A;  4HIL A;  1AWP A;  2AXX A;  1CXY A;  1LCO A;  1LR6 A;  1B5M A;  1IET A;  1J03 A;  1B5B A;  1ICC A;  2I89 A;  3LF5 A;  1SOX A;  3MUS A;  3X33 A;  1B5A A;  4B8N A;  1JEX A;  1LTD A;  1FCB A;  1F04 A;  1I87 A;  1U9U A;  1IB7 A;  2M33 A;  2OZ0 A;  1EHB A;  1BFX A;  1ES1 A;  1M2I A;  1M20 A;  1AXX A;  2KEO A;  1M2M A;  1X3X A;  1I5U A;  1MNY A;  2I96 A;  1J0Q A;  3KS0 A;  1SH4 A;  1I8C A;  4HIN A;  3X34 A;  1KBI A;  1U9M A;  1DO9 A;  3NER A;  3X35 A;  1LQX A;  4X8Y A;  1AQA A;  1EUE A;  2IBJ A;  1BLV A;  3X32 A; 
#chains in the Genus database with same CATH topology
 1T0G A;  1HKO A;  1M59 A;  1CYO A;  1F03 A;  1MJ4 A;  3OZZ B;  1NX7 A;  1LDC A;  1AW3 A;  1IEU A;  1LJ0 A;  4HIL A;  1AWP A;  2AXX A;  1CXY A;  1LCO A;  1LR6 A;  1B5M A;  1IET A;  1J03 A;  1B5B A;  1ICC A;  2I89 A;  3LF5 A;  1SOX A;  3MUS A;  3X33 A;  1B5A A;  4B8N A;  1JEX A;  1LTD A;  1FCB A;  1F04 A;  1I87 A;  1U9U A;  1IB7 A;  2M33 A;  2OZ0 A;  1EHB A;  1BFX A;  1ES1 A;  1M2I A;  1M20 A;  1AXX A;  2KEO A;  1M2M A;  1X3X A;  1I5U A;  1MNY A;  2I96 A;  1J0Q A;  3KS0 A;  1SH4 A;  1I8C A;  4HIN A;  3X34 A;  1KBI A;  1U9M A;  1DO9 A;  3NER A;  3X35 A;  1LQX A;  4X8Y A;  1AQA A;  1EUE A;  2IBJ A;  1BLV A;  3X32 A; 
#chains in the Genus database with same CATH homology
 1T0G A;  1HKO A;  1M59 A;  1CYO A;  1F03 A;  1MJ4 A;  3OZZ B;  1NX7 A;  1LDC A;  1AW3 A;  1IEU A;  1LJ0 A;  4HIL A;  1AWP A;  2AXX A;  1CXY A;  1LCO A;  1LR6 A;  1B5M A;  1IET A;  1J03 A;  1B5B A;  1ICC A;  2I89 A;  3LF5 A;  1SOX A;  3MUS A;  3X33 A;  1B5A A;  4B8N A;  1JEX A;  1LTD A;  1FCB A;  1F04 A;  1I87 A;  1U9U A;  1IB7 A;  2M33 A;  2OZ0 A;  1EHB A;  1BFX A;  1ES1 A;  1M2I A;  1M20 A;  1AXX A;  2KEO A;  1M2M A;  1X3X A;  1I5U A;  1MNY A;  2I96 A;  1J0Q A;  3KS0 A;  1SH4 A;  1I8C A;  4HIN A;  3X34 A;  1KBI A;  1U9M A;  1DO9 A;  3NER A;  3X35 A;  1LQX A;  4X8Y A;  1AQA A;  1EUE A;  2IBJ A;  1BLV A;  3X32 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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