1B5MA

Rat outer mitochondrial membrane cytochrome b5
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
84
structure length
84
Chain Sequence
AVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME B5
publication title 13C NMR spectroscopic and X-ray crystallographic study of the role played by mitochondrial cytochrome b5 heme propionates in the electrostatic binding to cytochrome c.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 23
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 1996-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1b5mA00
1U9MA 1EHBA 3LF5A 1NX7A 3X33A 3KS0A 1HKOA 1CXYA 1BFXA 2OZ0A 1M59A 1M20A 3MUSA 1MJ4A 2IBJA 1LJ0A 2I89A 1IEUA 1LTDA 1LR6A 1M2IA 3X32A 1B5MA 1J0QA 1F04A 1B5BA 1LCOA 1X3XA 2AXXA 4X8YA 1F03A 3X34A 4B8NA 1SH4A 1J03A 1I87A 1I8CA 1AW3A 1ICCA 1IETA 1DO9A 1BLVA 1AWPA 2M33A 1AQAA 4HILA 1EUEA 1IB7A 1ES1A 1LDCA 1M2MA 1LQXA 1SOXA 3X35A 1JEXA 3OZZB 1B5AA 1U9UA 1MNYA 3NERA 1FCBA 2I96A 4HINA 2KEOA 1AXXA 1T0GA 1KBIA 1CYOA 1I5UA
chains in the Genus database with same CATH superfamily
1U9MA 1EHBA 3LF5A 1NX7A 3X33A 3KS0A 1HKOA 1CXYA 1BFXA 2OZ0A 1M59A 1M20A 3MUSA 1MJ4A 2IBJA 1LJ0A 2I89A 1IEUA 1LTDA 1LR6A 1M2IA 3X32A 1B5MA 1J0QA 1F04A 1B5BA 1LCOA 1X3XA 2AXXA 4X8YA 1F03A 3X34A 4B8NA 1SH4A 1J03A 1I87A 1I8CA 1AW3A 1ICCA 1IETA 1DO9A 1BLVA 1AWPA 2M33A 1AQAA 4HILA 1EUEA 1IB7A 1ES1A 1LDCA 1M2MA 1LQXA 1SOXA 3X35A 1JEXA 3OZZB 1B5AA 1U9UA 1MNYA 3NERA 1FCBA 2I96A 4HINA 2KEOA 1AXXA 1T0GA 1KBIA 1CYOA 1I5UA
chains in the Genus database with same CATH topology
1U9MA 1EHBA 3LF5A 1NX7A 3X33A 3KS0A 1HKOA 1CXYA 1BFXA 2OZ0A 1M59A 1M20A 3MUSA 1MJ4A 2IBJA 1LJ0A 2I89A 1IEUA 1LTDA 1LR6A 1M2IA 3X32A 1B5MA 1J0QA 1F04A 1B5BA 1LCOA 1X3XA 2AXXA 4X8YA 1F03A 3X34A 4B8NA 1SH4A 1J03A 1I87A 1I8CA 1AW3A 1ICCA 1IETA 1DO9A 1BLVA 1AWPA 2M33A 1AQAA 4HILA 1EUEA 1IB7A 1ES1A 1LDCA 1M2MA 1LQXA 1SOXA 3X35A 1JEXA 3OZZB 1B5AA 1U9UA 1MNYA 3NERA 1FCBA 2I96A 4HINA 2KEOA 1AXXA 1T0GA 1KBIA 1CYOA 1I5UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U9M A;  1EHB A;  3LF5 A;  1NX7 A;  3X33 A;  3KS0 A;  1HKO A;  1CXY A;  1BFX A;  2OZ0 A;  1M59 A;  1M20 A;  3MUS A;  1MJ4 A;  2IBJ A;  1LJ0 A;  2I89 A;  1IEU A;  1LTD A;  1LR6 A;  1M2I A;  3X32 A;  1B5M A;  1J0Q A;  1F04 A;  1B5B A;  1LCO A;  1X3X A;  2AXX A;  4X8Y A;  1F03 A;  3X34 A;  4B8N A;  1SH4 A;  1J03 A;  1I87 A;  1I8C A;  1AW3 A;  1ICC A;  1IET A;  1DO9 A;  1BLV A;  1AWP A;  2M33 A;  1AQA A;  4HIL A;  1EUE A;  1IB7 A;  1ES1 A;  1LDC A;  1M2M A;  1LQX A;  1SOX A;  3X35 A;  1JEX A;  3OZZ B;  1B5A A;  1U9U A;  1MNY A;  3NER A;  1FCB A;  2I96 A;  4HIN A;  2KEO A;  1AXX A;  1T0G A;  1KBI A;  1CYO A;  1I5U A; 
#chains in the Genus database with same CATH topology
 1U9M A;  1EHB A;  3LF5 A;  1NX7 A;  3X33 A;  3KS0 A;  1HKO A;  1CXY A;  1BFX A;  2OZ0 A;  1M59 A;  1M20 A;  3MUS A;  1MJ4 A;  2IBJ A;  1LJ0 A;  2I89 A;  1IEU A;  1LTD A;  1LR6 A;  1M2I A;  3X32 A;  1B5M A;  1J0Q A;  1F04 A;  1B5B A;  1LCO A;  1X3X A;  2AXX A;  4X8Y A;  1F03 A;  3X34 A;  4B8N A;  1SH4 A;  1J03 A;  1I87 A;  1I8C A;  1AW3 A;  1ICC A;  1IET A;  1DO9 A;  1BLV A;  1AWP A;  2M33 A;  1AQA A;  4HIL A;  1EUE A;  1IB7 A;  1ES1 A;  1LDC A;  1M2M A;  1LQX A;  1SOX A;  3X35 A;  1JEX A;  3OZZ B;  1B5A A;  1U9U A;  1MNY A;  3NER A;  1FCB A;  2I96 A;  4HIN A;  2KEO A;  1AXX A;  1T0G A;  1KBI A;  1CYO A;  1I5U A; 
#chains in the Genus database with same CATH homology
 1U9M A;  1EHB A;  3LF5 A;  1NX7 A;  3X33 A;  3KS0 A;  1HKO A;  1CXY A;  1BFX A;  2OZ0 A;  1M59 A;  1M20 A;  3MUS A;  1MJ4 A;  2IBJ A;  1LJ0 A;  2I89 A;  1IEU A;  1LTD A;  1LR6 A;  1M2I A;  3X32 A;  1B5M A;  1J0Q A;  1F04 A;  1B5B A;  1LCO A;  1X3X A;  2AXX A;  4X8Y A;  1F03 A;  3X34 A;  4B8N A;  1SH4 A;  1J03 A;  1I87 A;  1I8C A;  1AW3 A;  1ICC A;  1IET A;  1DO9 A;  1BLV A;  1AWP A;  2M33 A;  1AQA A;  4HIL A;  1EUE A;  1IB7 A;  1ES1 A;  1LDC A;  1M2M A;  1LQX A;  1SOX A;  3X35 A;  1JEX A;  3OZZ B;  1B5A A;  1U9U A;  1MNY A;  3NER A;  1FCB A;  2I96 A;  4HIN A;  2KEO A;  1AXX A;  1T0G A;  1KBI A;  1CYO A;  1I5U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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