1B65A

Structure of l-aminopeptidase d-ala-esterase/amidase from ochrobactrum anthropi, a prototype for the serine aminopeptidases, reveals a new variant among the ntn hydrolase fold
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
367
structure length
363
Chain Sequence
KPRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMTGTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALDNVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPLDTVYLAAVDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQYGRLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PROTEIN (AMINOPEPTIDASE)
publication title A new variant of the Ntn hydrolase fold revealed by the crystal structure of L-aminopeptidase D-ala-esterase/amidase from Ochrobactrum anthropi.
pubmed doi rcsb
source organism Ochrobactrum anthropi
total genus 114
structure length 363
sequence length 367
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 1999-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03576 Peptidase_S58 Peptidase family S58
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.70.12 Alpha Beta 4-Layer Sandwich L-amino peptidase D-ALA esterase/amidase L-amino peptidase D-ALA esterase/amidase 1b65A00
3IT6A 3N5IA 2VZKA 3AXGA 3N33A 4IHDA 1B65A 2YEPA 3NFBA 4IHEA 3TM2A 3IT4A 1VZ8A 3NDVA 3S3UA 3N2WA 2DRHA 3TM1A 1VZ6A 1VZ7A 1VRAA 2V4IA
chains in the Genus database with same CATH superfamily
3IT6A 3N5IA 2VZKA 3AXGA 3N33A 4IHDA 1B65A 2YEPA 3NFBA 4IHEA 3TM2A 3IT4A 1VZ8A 3NDVA 3S3UA 3N2WA 2DRHA 3TM1A 1VZ6A 1VZ7A 1VRAA 2V4IA
chains in the Genus database with same CATH topology
3IT6A 3N5IA 2VZKA 3AXGA 3N33A 4IHDA 1B65A 2YEPA 3NFBA 4IHEA 3TM2A 3IT4A 1VZ8A 3NDVA 3S3UA 3N2WA 2DRHA 3TM1A 1VZ6A 1VZ7A 1VRAA 2V4IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IT6 A;  3N5I A;  2VZK A;  3AXG A;  3N33 A;  4IHD A;  1B65 A;  2YEP A;  3NFB A;  4IHE A;  3TM2 A;  3IT4 A;  1VZ8 A;  3NDV A;  3S3U A;  3N2W A;  2DRH A;  3TM1 A;  1VZ6 A;  1VZ7 A;  1VRA A;  2V4I A; 
#chains in the Genus database with same CATH topology
 3IT6 A;  3N5I A;  2VZK A;  3AXG A;  3N33 A;  4IHD A;  1B65 A;  2YEP A;  3NFB A;  4IHE A;  3TM2 A;  3IT4 A;  1VZ8 A;  3NDV A;  3S3U A;  3N2W A;  2DRH A;  3TM1 A;  1VZ6 A;  1VZ7 A;  1VRA A;  2V4I A; 
#chains in the Genus database with same CATH homology
 3IT6 A;  3N5I A;  2VZK A;  3AXG A;  3N33 A;  4IHD A;  1B65 A;  2YEP A;  3NFB A;  4IHE A;  3TM2 A;  3IT4 A;  1VZ8 A;  3NDV A;  3S3U A;  3N2W A;  2DRH A;  3TM1 A;  1VZ6 A;  1VZ7 A;  1VRA A;  2V4I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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