1B8MB

Brain derived neurotrophic factor, neurotrophin-4
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
119
structure length
115
Chain Sequence
GELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKAEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRTGRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Growth factor/neurotrophin-4
molecule keywords PROTEIN (BRAIN DERIVED NEUROTROPHIC FACTOR)
publication title The structures of the neurotrophin 4 homodimer and the brain-derived neurotrophic factor/neurotrophin 4 heterodimer reveal a common Trk-binding site.
pubmed rcsb
source organism Homo sapiens
total genus 15
structure length 115
sequence length 119
ec nomenclature
pdb deposition date 1999-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00243 NGF Nerve growth factor family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1b8mB00
1WQ9A 2C7WA 5BQBA 1HCFA 2P6AA 4GLNE 3S1KV 1DZ7A 5AEJA 2VXSA 1SGFB 2ASKA 2V5EB 3MJGA 4UI1A 4EDWV 4QCIC 1RV6V 4KZNA 1KLCA 1S4YB 5BQEA 1BETA 1BNDB 3BDYV 5BPUA 4GLSE 1CZ8V 1LX5A 2R53A 5HI5A 4ZFFC 1REUA 3BUKA 5HK5A 2H64A 1AOCA 4AY9A 1VPPV 1BMPA 1MKKA 1REWA 4QHUC 1SG1A 1WAQA 5BQ8D 3JVFA 1NYUB 2XV7A 1ZKZA 5HK5E 1QFWB 4WPBA 1JPYA 1KATW 1TGJA 4MPLA 1FL7A 4MIDA 1XWDA 2X1WA 3BMPA 2TGIA 4HQUA 3FUBB 5E4GA 1QTYR 2ARPA 2GNNA 3RJRA 4LXSJ 5BQCA 2BHKA 1TGKA 3QB4A 4YCIC 4BV4L 1PDGA 1B8KA 2QJBA 2B0UA 2X1XE 1BNDA 4UHYA 1HRPB 1HD4A 1TFGA 1E9JA 4KXZA 3BK3A 4UI0A 5BQ8B 3EO1C 5HI4A 1VPFA 1LXIA 2FJHV 4MQWB 3EVSB 1B8MB 4YCGC 4LXRJ 5HHDA 2VWEA 1AGQA 1WQ8A 1QFWA 3MJKA 5F3BC 2GOOA 1NYSB 1NT3A 5F3HI 3S1BV 4FAOA 4KV5A 1FZVA 2H62A 4HSAA 5HI3A 1HCNB 4QAFC 4AY9B 2QR0C 3IJ2A 2PJYA 4EC7A 3V6BA 4UI2B 1FLTV 1TZIV 5HHVA 2XACA 2GYRA 2QJAA 3P9WA 2KD3A 3SEKB 2QJ9A 2FJGV 5FV2V 4EDXV 5BQ8A 2QCQA 5HHCA 4X1JA 4MQWA 1XWDB 1WQ9B 1MKGA 1B8MA 2ARVA 1M4UA 1ES7A 1KLAA 5BQEB 1MJVA 4UHZA 2GYZA 1B98A 2R52A 2VPFA 4EFVA 1TZHV 4ZBNA 5FV1V 1BJ1V 1WWWV 4XPJA 3QTKA 1HCNA 3KFDA 1M4UL 2GH0C 5HHXA 3V2AA 3B4VA 3HH2A 5JZ7A 1HRPA 4HQXA 1KTZA 2IFGE 4N1DA 1BTGA 1FL7B 3E07A 4EAXA 2QCWA 4HR9A
chains in the Genus database with same CATH superfamily
1WQ9A 2C7WA 5BQBA 1HCFA 2P6AA 4GLNE 3S1KV 1DZ7A 5AEJA 2VXSA 1SGFB 2ASKA 2V5EB 3MJGA 4UI1A 4EDWV 4QCIC 1RV6V 4KZNA 1KLCA 1S4YB 5BQEA 1BETA 1BNDB 3BDYV 5BPUA 4GLSE 1CZ8V 1LX5A 2R53A 5HI5A 4ZFFC 1REUA 3BUKA 5HK5A 2H64A 1AOCA 4AY9A 1VPPV 1BMPA 1MKKA 1REWA 4QHUC 1SG1A 1WAQA 5BQ8D 3JVFA 1NYUB 2XV7A 1ZKZA 5HK5E 1QFWB 4WPBA 1JPYA 1KATW 1TGJA 4MPLA 1FL7A 4MIDA 1XWDA 2X1WA 3BMPA 2TGIA 4HQUA 3FUBB 5E4GA 1QTYR 2ARPA 2GNNA 3RJRA 4LXSJ 5BQCA 2BHKA 1TGKA 3QB4A 4YCIC 4BV4L 1PDGA 1B8KA 2QJBA 2B0UA 2X1XE 1BNDA 4UHYA 1HRPB 1HD4A 1TFGA 1E9JA 4KXZA 3BK3A 4UI0A 5BQ8B 3EO1C 5HI4A 1VPFA 1LXIA 2FJHV 4MQWB 3EVSB 1B8MB 4YCGC 4LXRJ 5HHDA 2VWEA 1AGQA 1WQ8A 1QFWA 3MJKA 5F3BC 2GOOA 1NYSB 1NT3A 5F3HI 3S1BV 4FAOA 4KV5A 1FZVA 2H62A 4HSAA 5HI3A 1HCNB 4QAFC 4AY9B 2QR0C 3IJ2A 2PJYA 4EC7A 3V6BA 4UI2B 1FLTV 1TZIV 5HHVA 2XACA 2GYRA 2QJAA 3P9WA 2KD3A 3SEKB 2QJ9A 2FJGV 5FV2V 4EDXV 5BQ8A 2QCQA 5HHCA 4X1JA 4MQWA 1XWDB 1WQ9B 1MKGA 1B8MA 2ARVA 1M4UA 1ES7A 1KLAA 5BQEB 1MJVA 4UHZA 2GYZA 1B98A 2R52A 2VPFA 4EFVA 1TZHV 4ZBNA 5FV1V 1BJ1V 1WWWV 4XPJA 3QTKA 1HCNA 3KFDA 1M4UL 2GH0C 5HHXA 3V2AA 3B4VA 3HH2A 5JZ7A 1HRPA 4HQXA 1KTZA 2IFGE 4N1DA 1BTGA 1FL7B 3E07A 4EAXA 2QCWA 4HR9A
chains in the Genus database with same CATH topology
1WQ9A 2C7WA 5BQBA 1HCFA 2P6AA 4GLNE 3S1KV 1DZ7A 5AEJA 2VXSA 1SGFB 2ASKA 2V5EB 3MJGA 4UI1A 4EDWV 4QCIC 1RV6V 4KZNA 1KLCA 1S4YB 5BQEA 1BETA 1BNDB 3BDYV 5BPUA 4GLSE 1CZ8V 1LX5A 2R53A 5HI5A 4ZFFC 1REUA 3BUKA 5HK5A 2H64A 1AOCA 4AY9A 1VPPV 1BMPA 1MKKA 1REWA 4QHUC 1SG1A 1WAQA 5BQ8D 3JVFA 1NYUB 2XV7A 1ZKZA 5HK5E 1QFWB 4WPBA 1JPYA 1KATW 1TGJA 4MPLA 1FL7A 4MIDA 1XWDA 2X1WA 3BMPA 2TGIA 4HQUA 3FUBB 5E4GA 1QTYR 2ARPA 2GNNA 3RJRA 4LXSJ 5BQCA 2BHKA 1TGKA 3QB4A 4YCIC 4BV4L 1PDGA 1B8KA 2QJBA 2B0UA 2X1XE 1BNDA 4UHYA 1HRPB 1HD4A 1TFGA 1E9JA 4KXZA 3BK3A 4UI0A 5BQ8B 3EO1C 5HI4A 1VPFA 1LXIA 2FJHV 4MQWB 3EVSB 1B8MB 4YCGC 4LXRJ 5HHDA 2VWEA 1AGQA 1WQ8A 1QFWA 3MJKA 5F3BC 2GOOA 1NYSB 1NT3A 5F3HI 3S1BV 4FAOA 4KV5A 1FZVA 2H62A 4HSAA 5HI3A 1HCNB 4QAFC 4AY9B 2QR0C 3IJ2A 2PJYA 4EC7A 3V6BA 4UI2B 1FLTV 1TZIV 5HHVA 2XACA 2GYRA 2QJAA 3P9WA 2KD3A 3SEKB 2QJ9A 2FJGV 5FV2V 4EDXV 5BQ8A 2QCQA 5HHCA 4X1JA 4MQWA 1XWDB 1WQ9B 1MKGA 1B8MA 2ARVA 1M4UA 1ES7A 1KLAA 5BQEB 1MJVA 4UHZA 2GYZA 1B98A 2R52A 2VPFA 4EFVA 1TZHV 4ZBNA 5FV1V 1BJ1V 1WWWV 4XPJA 3QTKA 1HCNA 3KFDA 1M4UL 2GH0C 5HHXA 3V2AA 3B4VA 3HH2A 5JZ7A 1HRPA 4HQXA 1KTZA 2IFGE 4N1DA 1BTGA 1FL7B 3E07A 4EAXA 2QCWA 4HR9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WQ9 A;  2C7W A;  5BQB A;  1HCF A;  2P6A A;  4GLN E;  3S1K V;  1DZ7 A;  5AEJ A;  2VXS A;  1SGF B;  2ASK A;  2V5E B;  3MJG A;  4UI1 A;  4EDW V;  4QCI C;  1RV6 V;  4KZN A;  1KLC A;  1S4Y B;  5BQE A;  1BET A;  1BND B;  3BDY V;  5BPU A;  4GLS E;  1CZ8 V;  1LX5 A;  2R53 A;  5HI5 A;  4ZFF C;  1REU A;  3BUK A;  5HK5 A;  2H64 A;  1AOC A;  4AY9 A;  1VPP V;  1BMP A;  1MKK A;  1REW A;  4QHU C;  1SG1 A;  1WAQ A;  5BQ8 D;  3JVF A;  1NYU B;  2XV7 A;  1ZKZ A;  5HK5 E;  1QFW B;  4WPB A;  1JPY A;  1KAT W;  1TGJ A;  4MPL A;  1FL7 A;  4MID A;  1XWD A;  2X1W A;  3BMP A;  2TGI A;  4HQU A;  3FUB B;  5E4G A;  1QTY R;  2ARP A;  2GNN A;  3RJR A;  4LXS J;  5BQC A;  2BHK A;  1TGK A;  3QB4 A;  4YCI C;  4BV4 L;  1PDG A;  1B8K A;  2QJB A;  2B0U A;  2X1X E;  1BND A;  4UHY A;  1HRP B;  1HD4 A;  1TFG A;  1E9J A;  4KXZ A;  3BK3 A;  4UI0 A;  5BQ8 B;  3EO1 C;  5HI4 A;  1VPF A;  1LXI A;  2FJH V;  4MQW B;  3EVS B;  1B8M B;  4YCG C;  4LXR J;  5HHD A;  2VWE A;  1AGQ A;  1WQ8 A;  1QFW A;  3MJK A;  5F3B C;  2GOO A;  1NYS B;  1NT3 A;  5F3H I;  3S1B V;  4FAO A;  4KV5 A;  1FZV A;  2H62 A;  4HSA A;  5HI3 A;  1HCN B;  4QAF C;  4AY9 B;  2QR0 C;  3IJ2 A;  2PJY A;  4EC7 A;  3V6B A;  4UI2 B;  1FLT V;  1TZI V;  5HHV A;  2XAC A;  2GYR A;  2QJA A;  3P9W A;  2KD3 A;  3SEK B;  2QJ9 A;  2FJG V;  5FV2 V;  4EDX V;  5BQ8 A;  2QCQ A;  5HHC A;  4X1J A;  4MQW A;  1XWD B;  1WQ9 B;  1MKG A;  1B8M A;  2ARV A;  1M4U A;  1ES7 A;  1KLA A;  5BQE B;  1MJV A;  4UHZ A;  2GYZ A;  1B98 A;  2R52 A;  2VPF A;  4EFV A;  1TZH V;  4ZBN A;  5FV1 V;  1BJ1 V;  1WWW V;  4XPJ A;  3QTK A;  1HCN A;  3KFD A;  1M4U L;  2GH0 C;  5HHX A;  3V2A A;  3B4V A;  3HH2 A;  5JZ7 A;  1HRP A;  4HQX A;  1KTZ A;  2IFG E;  4N1D A;  1BTG A;  1FL7 B;  3E07 A;  4EAX A;  2QCW A;  4HR9 A; 
#chains in the Genus database with same CATH topology
 1WQ9 A;  2C7W A;  5BQB A;  1HCF A;  2P6A A;  4GLN E;  3S1K V;  1DZ7 A;  5AEJ A;  2VXS A;  1SGF B;  2ASK A;  2V5E B;  3MJG A;  4UI1 A;  4EDW V;  4QCI C;  1RV6 V;  4KZN A;  1KLC A;  1S4Y B;  5BQE A;  1BET A;  1BND B;  3BDY V;  5BPU A;  4GLS E;  1CZ8 V;  1LX5 A;  2R53 A;  5HI5 A;  4ZFF C;  1REU A;  3BUK A;  5HK5 A;  2H64 A;  1AOC A;  4AY9 A;  1VPP V;  1BMP A;  1MKK A;  1REW A;  4QHU C;  1SG1 A;  1WAQ A;  5BQ8 D;  3JVF A;  1NYU B;  2XV7 A;  1ZKZ A;  5HK5 E;  1QFW B;  4WPB A;  1JPY A;  1KAT W;  1TGJ A;  4MPL A;  1FL7 A;  4MID A;  1XWD A;  2X1W A;  3BMP A;  2TGI A;  4HQU A;  3FUB B;  5E4G A;  1QTY R;  2ARP A;  2GNN A;  3RJR A;  4LXS J;  5BQC A;  2BHK A;  1TGK A;  3QB4 A;  4YCI C;  4BV4 L;  1PDG A;  1B8K A;  2QJB A;  2B0U A;  2X1X E;  1BND A;  4UHY A;  1HRP B;  1HD4 A;  1TFG A;  1E9J A;  4KXZ A;  3BK3 A;  4UI0 A;  5BQ8 B;  3EO1 C;  5HI4 A;  1VPF A;  1LXI A;  2FJH V;  4MQW B;  3EVS B;  1B8M B;  4YCG C;  4LXR J;  5HHD A;  2VWE A;  1AGQ A;  1WQ8 A;  1QFW A;  3MJK A;  5F3B C;  2GOO A;  1NYS B;  1NT3 A;  5F3H I;  3S1B V;  4FAO A;  4KV5 A;  1FZV A;  2H62 A;  4HSA A;  5HI3 A;  1HCN B;  4QAF C;  4AY9 B;  2QR0 C;  3IJ2 A;  2PJY A;  4EC7 A;  3V6B A;  4UI2 B;  1FLT V;  1TZI V;  5HHV A;  2XAC A;  2GYR A;  2QJA A;  3P9W A;  2KD3 A;  3SEK B;  2QJ9 A;  2FJG V;  5FV2 V;  4EDX V;  5BQ8 A;  2QCQ A;  5HHC A;  4X1J A;  4MQW A;  1XWD B;  1WQ9 B;  1MKG A;  1B8M A;  2ARV A;  1M4U A;  1ES7 A;  1KLA A;  5BQE B;  1MJV A;  4UHZ A;  2GYZ A;  1B98 A;  2R52 A;  2VPF A;  4EFV A;  1TZH V;  4ZBN A;  5FV1 V;  1BJ1 V;  1WWW V;  4XPJ A;  3QTK A;  1HCN A;  3KFD A;  1M4U L;  2GH0 C;  5HHX A;  3V2A A;  3B4V A;  3HH2 A;  5JZ7 A;  1HRP A;  4HQX A;  1KTZ A;  2IFG E;  4N1D A;  1BTG A;  1FL7 B;  3E07 A;  4EAX A;  2QCW A;  4HR9 A; 
#chains in the Genus database with same CATH homology
 1WQ9 A;  2C7W A;  5BQB A;  1HCF A;  2P6A A;  4GLN E;  3S1K V;  1DZ7 A;  5AEJ A;  2VXS A;  1SGF B;  2ASK A;  2V5E B;  3MJG A;  4UI1 A;  4EDW V;  4QCI C;  1RV6 V;  4KZN A;  1KLC A;  1S4Y B;  5BQE A;  1BET A;  1BND B;  3BDY V;  5BPU A;  4GLS E;  1CZ8 V;  1LX5 A;  2R53 A;  5HI5 A;  4ZFF C;  1REU A;  3BUK A;  5HK5 A;  2H64 A;  1AOC A;  4AY9 A;  1VPP V;  1BMP A;  1MKK A;  1REW A;  4QHU C;  1SG1 A;  1WAQ A;  5BQ8 D;  3JVF A;  1NYU B;  2XV7 A;  1ZKZ A;  5HK5 E;  1QFW B;  4WPB A;  1JPY A;  1KAT W;  1TGJ A;  4MPL A;  1FL7 A;  4MID A;  1XWD A;  2X1W A;  3BMP A;  2TGI A;  4HQU A;  3FUB B;  5E4G A;  1QTY R;  2ARP A;  2GNN A;  3RJR A;  4LXS J;  5BQC A;  2BHK A;  1TGK A;  3QB4 A;  4YCI C;  4BV4 L;  1PDG A;  1B8K A;  2QJB A;  2B0U A;  2X1X E;  1BND A;  4UHY A;  1HRP B;  1HD4 A;  1TFG A;  1E9J A;  4KXZ A;  3BK3 A;  4UI0 A;  5BQ8 B;  3EO1 C;  5HI4 A;  1VPF A;  1LXI A;  2FJH V;  4MQW B;  3EVS B;  1B8M B;  4YCG C;  4LXR J;  5HHD A;  2VWE A;  1AGQ A;  1WQ8 A;  1QFW A;  3MJK A;  5F3B C;  2GOO A;  1NYS B;  1NT3 A;  5F3H I;  3S1B V;  4FAO A;  4KV5 A;  1FZV A;  2H62 A;  4HSA A;  5HI3 A;  1HCN B;  4QAF C;  4AY9 B;  2QR0 C;  3IJ2 A;  2PJY A;  4EC7 A;  3V6B A;  4UI2 B;  1FLT V;  1TZI V;  5HHV A;  2XAC A;  2GYR A;  2QJA A;  3P9W A;  2KD3 A;  3SEK B;  2QJ9 A;  2FJG V;  5FV2 V;  4EDX V;  5BQ8 A;  2QCQ A;  5HHC A;  4X1J A;  4MQW A;  1XWD B;  1WQ9 B;  1MKG A;  1B8M A;  2ARV A;  1M4U A;  1ES7 A;  1KLA A;  5BQE B;  1MJV A;  4UHZ A;  2GYZ A;  1B98 A;  2R52 A;  2VPF A;  4EFV A;  1TZH V;  4ZBN A;  5FV1 V;  1BJ1 V;  1WWW V;  4XPJ A;  3QTK A;  1HCN A;  3KFD A;  1M4U L;  2GH0 C;  5HHX A;  3V2A A;  3B4V A;  3HH2 A;  5JZ7 A;  1HRP A;  4HQX A;  1KTZ A;  2IFG E;  4N1D A;  1BTG A;  1FL7 B;  3E07 A;  4EAX A;  2QCW A;  4HR9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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