1B8WA

Defensin-like peptide 1
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
42
structure length
42
Chain Sequence
FVQHRPRDCESINGVCRHKDTVNCREIFLADCYNDGQKCCRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of a defensin-like peptide from platypus venom.
pubmed doi rcsb
molecule tags Toxin
molecule keywords PROTEIN (DEFENSIN-LIKE PEPTIDE 1)
total genus 6
structure length 42
sequence length 42
ec nomenclature
pdb deposition date 1999-02-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08131 Defensin_3 Defensin-like peptide family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.20.10 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 1b8wA00
4GV5A 1BDSA 1B8WA 2SH1A 1Z99A 2JTOA 3LMSB 1ZUEA 2RNGA 2K2XA 2MN3A 2BDSA 1SH1A 1ZUFA 1SHIA 1ZLHB 1H5OA 1AHLA 1D6BA 1WQKA 1APFA 1ATXA 2H9XA 1WXNA 3D4UB 2MUBA 1ZLIB
chains in the Genus database with same CATH superfamily
4GV5A 1BDSA 1B8WA 2SH1A 2QSHA 2HJ9C 1Z99A 2JTOA 2IKEA 2QSFA 1EL6A 2JR3A 3C30A 2XXLA 3LMSB 4YIRA 3C38A 2DLAA 1GL9B 1ZUEA 2RNGA 2QSGA 1GKUB 3KEZA 2K2XA 2MN3A 2BDSA 2HJEA 1SH1A 1ZUFA 1SHIA 1ZLHB 1H5OA 2MUBA 1AHLA 1D6BA 1WQKA 3MYVA 1APFA 1ATXA 2B9KA 2IKDA 3MCXA 2H9XA 1WXNA 3D4UB 3IF4A 1ZHHB 1ZLIB
chains in the Genus database with same CATH topology
4GV5A 1BDSA 1B8WA 2SH1A 2QSHA 2HJ9C 1Z99A 2JTOA 2IKEA 2QSFA 2JR3A 3C30A 2XXLA 3LMSB 4YIRA 3C38A 2DLAA 1ZUEA 2RNGA 2QSGA 3KEZA 2K2XA 2MN3A 2BDSA 2HJEA 1SH1A 1ZUFA 1SHIA 1ZLHB 1H5OA 2MUBA 1AHLA 1D6BA 1WQKA 3MYVA 1APFA 1ATXA 2B9KA 2IKDA 3MCXA 2H9XA 1WXNA 3D4UB 1ZHHB 1ZLIB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GV5 A;  1BDS A;  1B8W A;  2SH1 A;  1Z99 A;  2JTO A;  3LMS B;  1ZUE A;  2RNG A;  2K2X A;  2MN3 A;  2BDS A;  1SH1 A;  1ZUF A;  1SHI A;  1ZLH B;  1H5O A;  1AHL A;  1D6B A;  1WQK A;  1APF A;  1ATX A;  2H9X A;  1WXN A;  3D4U B;  2MUB A;  1ZLI B; 
#chains in the Genus database with same CATH topology
 4GV5 A;  1BDS A;  1B8W A;  2SH1 A;  2QSH A;  2HJ9 C;  1Z99 A;  2JTO A;  2IKE A;  2QSF A;  1EL6 A;  2JR3 A;  3C30 A;  2XXL A;  3LMS B;  4YIR A;  3C38 A;  2DLA A;  1GL9 B;  1ZUE A;  2RNG A;  2QSG A;  1GKU B;  3KEZ A;  2K2X A;  2MN3 A;  2BDS A;  2HJE A;  1SH1 A;  1ZUF A;  1SHI A;  1ZLH B;  1H5O A;  2MUB A;  1AHL A;  1D6B A;  1WQK A;  3MYV A;  1APF A;  1ATX A;  2B9K A;  2IKD A;  3MCX A;  2H9X A;  1WXN A;  3D4U B;  3IF4 A;  1ZHH B;  1ZLI B; 
#chains in the Genus database with same CATH homology
 4GV5 A;  1BDS A;  1B8W A;  2SH1 A;  2QSH A;  2HJ9 C;  1Z99 A;  2JTO A;  2IKE A;  2QSF A;  2JR3 A;  3C30 A;  2XXL A;  3LMS B;  4YIR A;  3C38 A;  2DLA A;  1ZUE A;  2RNG A;  2QSG A;  3KEZ A;  2K2X A;  2MN3 A;  2BDS A;  2HJE A;  1SH1 A;  1ZUF A;  1SHI A;  1ZLH B;  1H5O A;  2MUB A;  1AHL A;  1D6B A;  1WQK A;  3MYV A;  1APF A;  1ATX A;  2B9K A;  2IKD A;  3MCX A;  2H9X A;  1WXN A;  3D4U B;  1ZHH B;  1ZLI B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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