1B98A

Neurotrophin 4 (homodimer)
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
115
structure length
103
Chain Sequence
ELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRALTAVGWRWIRIDTACVCTLLSRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/growth factor
molecule keywords PROTEIN (NEUROTROPHIN-4)
publication title The structures of the neurotrophin 4 homodimer and the brain-derived neurotrophic factor/neurotrophin 4 heterodimer reveal a common Trk-binding site.
pubmed rcsb
source organism Homo sapiens
total genus 15
structure length 103
sequence length 115
chains with identical sequence M
ec nomenclature
pdb deposition date 1999-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00243 NGF Nerve growth factor family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1b98A00
3HH2A 5BQBA 1HCFA 1QFWB 4QAFC 1TGJA 4AY9B 5HK5A 3BUKA 4KXZA 4UI0A 1KATW 1BJ1V 2X1WA 2ARPA 2V5EB 4EDXV 5HI4A 1TFGA 3RJRA 1WQ9B 1XWDA 5BQCA 2VPFA 1TZHV 1WQ8A 2PJYA 5BQEB 3EO1C 4LXRJ 2X1XE 1BNDB 1REUA 4FAOA 3P9WA 3S1KV 2VXSA 4XPJA 5HHXA 5E4GA 1JPYA 5HI3A 4BV4L 2GNNA 5HHDA 1B8MA 2KD3A 1XWDB 1FZVA 2B0UA 1KLCA 4YCGC 3QB4A 1KLAA 4QHUC 1M4UL 4HR9A 4YCIC 1PDGA 5AEJA 2H62A 1CZ8V 4GLNE 5F3BC 5FV2V 1DZ7A 3BK3A 3EVSB 1HD4A 4MPLA 4GLSE 2GOOA 4MQWA 5BQ8A 1SG1A 5BPUA 1B8MB 1E9JA 1RV6V 1MKKA 2IFGE 3MJGA 5BQ8D 2GH0C 1REWA 2R52A 4LXSJ 1ZKZA 2QCWA 1NT3A 3BMPA 3IJ2A 1B8KA 5HHVA 3V2AA 3V6BA 1ES7A 2ASKA 2R53A 1QTYR 3BDYV 1FL7A 3KFDA 1HRPA 5BQ8B 1NYSB 4KV5A 3MJKA 3QTKA 4N1DA 1VPFA 2H64A 1B98A 4UHYA 1QFWA 2QCQA 2C7WA 3SEKB 4AY9A 1TGKA 3B4VA 4X1JA 4EAXA 1HCNA 4EDWV 1BMPA 1WAQA 2BHKA 2GYRA 1M4UA 3JVFA 5HK5E 2QJ9A 4QCIC 2TGIA 5HI5A 4HQUA 2ARVA 1SGFB 1TZIV 1WWWV 5JZ7A 5F3HI 2P6AA 4EFVA 4HQXA 5BQEA 5FV1V 1BNDA 1LX5A 1AGQA 1NYUB 4EC7A 1HCNB 1VPPV 4MQWB 4HSAA 2XACA 2GYZA 4KZNA 4MIDA 2QJBA 5HHCA 4ZBNA 1MKGA 1LXIA 2QJAA 1BTGA 1S4YB 3E07A 1BETA 2FJGV 1AOCA 3FUBB 4WPBA 1KTZA 1FLTV 1MJVA 1FL7B 4UI1A 3S1BV 2VWEA 1WQ9A 4UI2B 2QR0C 2XV7A 4UHZA 2FJHV 1HRPB 4ZFFC
chains in the Genus database with same CATH superfamily
3HH2A 5BQBA 1HCFA 1QFWB 4QAFC 1TGJA 4AY9B 5HK5A 3BUKA 4KXZA 4UI0A 1KATW 1BJ1V 2X1WA 2ARPA 2V5EB 4EDXV 5HI4A 1TFGA 3RJRA 1WQ9B 1XWDA 5BQCA 2VPFA 1TZHV 1WQ8A 2PJYA 5BQEB 3EO1C 4LXRJ 2X1XE 1BNDB 1REUA 4FAOA 3P9WA 3S1KV 2VXSA 4XPJA 5HHXA 5E4GA 1JPYA 5HI3A 4BV4L 2GNNA 5HHDA 1B8MA 2KD3A 1XWDB 1FZVA 2B0UA 1KLCA 4YCGC 3QB4A 1KLAA 4QHUC 1M4UL 4HR9A 4YCIC 1PDGA 5AEJA 2H62A 1CZ8V 4GLNE 5F3BC 5FV2V 1DZ7A 3BK3A 3EVSB 1HD4A 4MPLA 4GLSE 2GOOA 4MQWA 5BQ8A 1SG1A 5BPUA 1B8MB 1E9JA 1RV6V 1MKKA 2IFGE 3MJGA 5BQ8D 2GH0C 1REWA 2R52A 4LXSJ 1ZKZA 2QCWA 1NT3A 3BMPA 3IJ2A 1B8KA 5HHVA 3V2AA 3V6BA 1ES7A 2ASKA 2R53A 1QTYR 3BDYV 1FL7A 3KFDA 1HRPA 5BQ8B 1NYSB 4KV5A 3MJKA 3QTKA 4N1DA 1VPFA 2H64A 1B98A 4UHYA 1QFWA 2QCQA 2C7WA 3SEKB 4AY9A 1TGKA 3B4VA 4X1JA 4EAXA 1HCNA 4EDWV 1BMPA 1WAQA 2BHKA 2GYRA 1M4UA 3JVFA 5HK5E 2QJ9A 4QCIC 2TGIA 5HI5A 4HQUA 2ARVA 1SGFB 1TZIV 1WWWV 5JZ7A 5F3HI 2P6AA 4EFVA 4HQXA 5BQEA 5FV1V 1BNDA 1LX5A 1AGQA 1NYUB 4EC7A 1HCNB 1VPPV 4MQWB 4HSAA 2XACA 2GYZA 4KZNA 4MIDA 2QJBA 5HHCA 4ZBNA 1MKGA 1LXIA 2QJAA 1BTGA 1S4YB 3E07A 1BETA 2FJGV 1AOCA 3FUBB 4WPBA 1KTZA 1FLTV 1MJVA 1FL7B 4UI1A 3S1BV 2VWEA 1WQ9A 4UI2B 2QR0C 2XV7A 4UHZA 2FJHV 1HRPB 4ZFFC
chains in the Genus database with same CATH topology
3HH2A 5BQBA 1HCFA 1QFWB 4QAFC 1TGJA 4AY9B 5HK5A 3BUKA 4KXZA 4UI0A 1KATW 1BJ1V 2X1WA 2ARPA 2V5EB 4EDXV 5HI4A 1TFGA 3RJRA 1WQ9B 1XWDA 5BQCA 2VPFA 1TZHV 1WQ8A 2PJYA 5BQEB 3EO1C 4LXRJ 2X1XE 1BNDB 1REUA 4FAOA 3P9WA 3S1KV 2VXSA 4XPJA 5HHXA 5E4GA 1JPYA 5HI3A 4BV4L 2GNNA 5HHDA 1B8MA 2KD3A 1XWDB 1FZVA 2B0UA 1KLCA 4YCGC 3QB4A 1KLAA 4QHUC 1M4UL 4HR9A 4YCIC 1PDGA 5AEJA 2H62A 1CZ8V 4GLNE 5F3BC 5FV2V 1DZ7A 3BK3A 3EVSB 1HD4A 4MPLA 4GLSE 2GOOA 4MQWA 5BQ8A 1SG1A 5BPUA 1B8MB 1E9JA 1RV6V 1MKKA 2IFGE 3MJGA 5BQ8D 2GH0C 1REWA 2R52A 4LXSJ 1ZKZA 2QCWA 1NT3A 3BMPA 3IJ2A 1B8KA 5HHVA 3V2AA 3V6BA 1ES7A 2ASKA 2R53A 1QTYR 3BDYV 1FL7A 3KFDA 1HRPA 5BQ8B 1NYSB 4KV5A 3MJKA 3QTKA 4N1DA 1VPFA 2H64A 1B98A 4UHYA 1QFWA 2QCQA 2C7WA 3SEKB 4AY9A 1TGKA 3B4VA 4X1JA 4EAXA 1HCNA 4EDWV 1BMPA 1WAQA 2BHKA 2GYRA 1M4UA 3JVFA 5HK5E 2QJ9A 4QCIC 2TGIA 5HI5A 4HQUA 2ARVA 1SGFB 1TZIV 1WWWV 5JZ7A 5F3HI 2P6AA 4EFVA 4HQXA 5BQEA 5FV1V 1BNDA 1LX5A 1AGQA 1NYUB 4EC7A 1HCNB 1VPPV 4MQWB 4HSAA 2XACA 2GYZA 4KZNA 4MIDA 2QJBA 5HHCA 4ZBNA 1MKGA 1LXIA 2QJAA 1BTGA 1S4YB 3E07A 1BETA 2FJGV 1AOCA 3FUBB 4WPBA 1KTZA 1FLTV 1MJVA 1FL7B 4UI1A 3S1BV 2VWEA 1WQ9A 4UI2B 2QR0C 2XV7A 4UHZA 2FJHV 1HRPB 4ZFFC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HH2 A;  5BQB A;  1HCF A;  1QFW B;  4QAF C;  1TGJ A;  4AY9 B;  5HK5 A;  3BUK A;  4KXZ A;  4UI0 A;  1KAT W;  1BJ1 V;  2X1W A;  2ARP A;  2V5E B;  4EDX V;  5HI4 A;  1TFG A;  3RJR A;  1WQ9 B;  1XWD A;  5BQC A;  2VPF A;  1TZH V;  1WQ8 A;  2PJY A;  5BQE B;  3EO1 C;  4LXR J;  2X1X E;  1BND B;  1REU A;  4FAO A;  3P9W A;  3S1K V;  2VXS A;  4XPJ A;  5HHX A;  5E4G A;  1JPY A;  5HI3 A;  4BV4 L;  2GNN A;  5HHD A;  1B8M A;  2KD3 A;  1XWD B;  1FZV A;  2B0U A;  1KLC A;  4YCG C;  3QB4 A;  1KLA A;  4QHU C;  1M4U L;  4HR9 A;  4YCI C;  1PDG A;  5AEJ A;  2H62 A;  1CZ8 V;  4GLN E;  5F3B C;  5FV2 V;  1DZ7 A;  3BK3 A;  3EVS B;  1HD4 A;  4MPL A;  4GLS E;  2GOO A;  4MQW A;  5BQ8 A;  1SG1 A;  5BPU A;  1B8M B;  1E9J A;  1RV6 V;  1MKK A;  2IFG E;  3MJG A;  5BQ8 D;  2GH0 C;  1REW A;  2R52 A;  4LXS J;  1ZKZ A;  2QCW A;  1NT3 A;  3BMP A;  3IJ2 A;  1B8K A;  5HHV A;  3V2A A;  3V6B A;  1ES7 A;  2ASK A;  2R53 A;  1QTY R;  3BDY V;  1FL7 A;  3KFD A;  1HRP A;  5BQ8 B;  1NYS B;  4KV5 A;  3MJK A;  3QTK A;  4N1D A;  1VPF A;  2H64 A;  1B98 A;  4UHY A;  1QFW A;  2QCQ A;  2C7W A;  3SEK B;  4AY9 A;  1TGK A;  3B4V A;  4X1J A;  4EAX A;  1HCN A;  4EDW V;  1BMP A;  1WAQ A;  2BHK A;  2GYR A;  1M4U A;  3JVF A;  5HK5 E;  2QJ9 A;  4QCI C;  2TGI A;  5HI5 A;  4HQU A;  2ARV A;  1SGF B;  1TZI V;  1WWW V;  5JZ7 A;  5F3H I;  2P6A A;  4EFV A;  4HQX A;  5BQE A;  5FV1 V;  1BND A;  1LX5 A;  1AGQ A;  1NYU B;  4EC7 A;  1HCN B;  1VPP V;  4MQW B;  4HSA A;  2XAC A;  2GYZ A;  4KZN A;  4MID A;  2QJB A;  5HHC A;  4ZBN A;  1MKG A;  1LXI A;  2QJA A;  1BTG A;  1S4Y B;  3E07 A;  1BET A;  2FJG V;  1AOC A;  3FUB B;  4WPB A;  1KTZ A;  1FLT V;  1MJV A;  1FL7 B;  4UI1 A;  3S1B V;  2VWE A;  1WQ9 A;  4UI2 B;  2QR0 C;  2XV7 A;  4UHZ A;  2FJH V;  1HRP B;  4ZFF C; 
#chains in the Genus database with same CATH topology
 3HH2 A;  5BQB A;  1HCF A;  1QFW B;  4QAF C;  1TGJ A;  4AY9 B;  5HK5 A;  3BUK A;  4KXZ A;  4UI0 A;  1KAT W;  1BJ1 V;  2X1W A;  2ARP A;  2V5E B;  4EDX V;  5HI4 A;  1TFG A;  3RJR A;  1WQ9 B;  1XWD A;  5BQC A;  2VPF A;  1TZH V;  1WQ8 A;  2PJY A;  5BQE B;  3EO1 C;  4LXR J;  2X1X E;  1BND B;  1REU A;  4FAO A;  3P9W A;  3S1K V;  2VXS A;  4XPJ A;  5HHX A;  5E4G A;  1JPY A;  5HI3 A;  4BV4 L;  2GNN A;  5HHD A;  1B8M A;  2KD3 A;  1XWD B;  1FZV A;  2B0U A;  1KLC A;  4YCG C;  3QB4 A;  1KLA A;  4QHU C;  1M4U L;  4HR9 A;  4YCI C;  1PDG A;  5AEJ A;  2H62 A;  1CZ8 V;  4GLN E;  5F3B C;  5FV2 V;  1DZ7 A;  3BK3 A;  3EVS B;  1HD4 A;  4MPL A;  4GLS E;  2GOO A;  4MQW A;  5BQ8 A;  1SG1 A;  5BPU A;  1B8M B;  1E9J A;  1RV6 V;  1MKK A;  2IFG E;  3MJG A;  5BQ8 D;  2GH0 C;  1REW A;  2R52 A;  4LXS J;  1ZKZ A;  2QCW A;  1NT3 A;  3BMP A;  3IJ2 A;  1B8K A;  5HHV A;  3V2A A;  3V6B A;  1ES7 A;  2ASK A;  2R53 A;  1QTY R;  3BDY V;  1FL7 A;  3KFD A;  1HRP A;  5BQ8 B;  1NYS B;  4KV5 A;  3MJK A;  3QTK A;  4N1D A;  1VPF A;  2H64 A;  1B98 A;  4UHY A;  1QFW A;  2QCQ A;  2C7W A;  3SEK B;  4AY9 A;  1TGK A;  3B4V A;  4X1J A;  4EAX A;  1HCN A;  4EDW V;  1BMP A;  1WAQ A;  2BHK A;  2GYR A;  1M4U A;  3JVF A;  5HK5 E;  2QJ9 A;  4QCI C;  2TGI A;  5HI5 A;  4HQU A;  2ARV A;  1SGF B;  1TZI V;  1WWW V;  5JZ7 A;  5F3H I;  2P6A A;  4EFV A;  4HQX A;  5BQE A;  5FV1 V;  1BND A;  1LX5 A;  1AGQ A;  1NYU B;  4EC7 A;  1HCN B;  1VPP V;  4MQW B;  4HSA A;  2XAC A;  2GYZ A;  4KZN A;  4MID A;  2QJB A;  5HHC A;  4ZBN A;  1MKG A;  1LXI A;  2QJA A;  1BTG A;  1S4Y B;  3E07 A;  1BET A;  2FJG V;  1AOC A;  3FUB B;  4WPB A;  1KTZ A;  1FLT V;  1MJV A;  1FL7 B;  4UI1 A;  3S1B V;  2VWE A;  1WQ9 A;  4UI2 B;  2QR0 C;  2XV7 A;  4UHZ A;  2FJH V;  1HRP B;  4ZFF C; 
#chains in the Genus database with same CATH homology
 3HH2 A;  5BQB A;  1HCF A;  1QFW B;  4QAF C;  1TGJ A;  4AY9 B;  5HK5 A;  3BUK A;  4KXZ A;  4UI0 A;  1KAT W;  1BJ1 V;  2X1W A;  2ARP A;  2V5E B;  4EDX V;  5HI4 A;  1TFG A;  3RJR A;  1WQ9 B;  1XWD A;  5BQC A;  2VPF A;  1TZH V;  1WQ8 A;  2PJY A;  5BQE B;  3EO1 C;  4LXR J;  2X1X E;  1BND B;  1REU A;  4FAO A;  3P9W A;  3S1K V;  2VXS A;  4XPJ A;  5HHX A;  5E4G A;  1JPY A;  5HI3 A;  4BV4 L;  2GNN A;  5HHD A;  1B8M A;  2KD3 A;  1XWD B;  1FZV A;  2B0U A;  1KLC A;  4YCG C;  3QB4 A;  1KLA A;  4QHU C;  1M4U L;  4HR9 A;  4YCI C;  1PDG A;  5AEJ A;  2H62 A;  1CZ8 V;  4GLN E;  5F3B C;  5FV2 V;  1DZ7 A;  3BK3 A;  3EVS B;  1HD4 A;  4MPL A;  4GLS E;  2GOO A;  4MQW A;  5BQ8 A;  1SG1 A;  5BPU A;  1B8M B;  1E9J A;  1RV6 V;  1MKK A;  2IFG E;  3MJG A;  5BQ8 D;  2GH0 C;  1REW A;  2R52 A;  4LXS J;  1ZKZ A;  2QCW A;  1NT3 A;  3BMP A;  3IJ2 A;  1B8K A;  5HHV A;  3V2A A;  3V6B A;  1ES7 A;  2ASK A;  2R53 A;  1QTY R;  3BDY V;  1FL7 A;  3KFD A;  1HRP A;  5BQ8 B;  1NYS B;  4KV5 A;  3MJK A;  3QTK A;  4N1D A;  1VPF A;  2H64 A;  1B98 A;  4UHY A;  1QFW A;  2QCQ A;  2C7W A;  3SEK B;  4AY9 A;  1TGK A;  3B4V A;  4X1J A;  4EAX A;  1HCN A;  4EDW V;  1BMP A;  1WAQ A;  2BHK A;  2GYR A;  1M4U A;  3JVF A;  5HK5 E;  2QJ9 A;  4QCI C;  2TGI A;  5HI5 A;  4HQU A;  2ARV A;  1SGF B;  1TZI V;  1WWW V;  5JZ7 A;  5F3H I;  2P6A A;  4EFV A;  4HQX A;  5BQE A;  5FV1 V;  1BND A;  1LX5 A;  1AGQ A;  1NYU B;  4EC7 A;  1HCN B;  1VPP V;  4MQW B;  4HSA A;  2XAC A;  2GYZ A;  4KZN A;  4MID A;  2QJB A;  5HHC A;  4ZBN A;  1MKG A;  1LXI A;  2QJA A;  1BTG A;  1S4Y B;  3E07 A;  1BET A;  2FJG V;  1AOC A;  3FUB B;  4WPB A;  1KTZ A;  1FLT V;  1MJV A;  1FL7 B;  4UI1 A;  3S1B V;  2VWE A;  1WQ9 A;  4UI2 B;  2QR0 C;  2XV7 A;  4UHZ A;  2FJH V;  1HRP B;  4ZFF C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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