1B9YB

Structural analysis of phosducin and its phosphorylation-regulated interaction with transducin beta-gamma
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
68
structure length
68
Chain Sequence
MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKELK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords PROTEIN (TRANSDUCIN)
publication title A molecular mechanism for the phosphorylation-dependent regulation of heterotrimeric G proteins by phosducin.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 19
structure length 68
sequence length 68
ec nomenclature
pdb deposition date 1999-02-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1b9yB00
3PVWG 5HE3G 5KDOG 3AH8G 1GG2G 2TRCG 1B9YB 3V5WG 2PBIA 5HE1G 3KRWG 5HE0G 1TBGE 1XHMB 4MK0G 3PSCG 1B9XB 2BCJG 1GOTG 3CIKG 1GP2G 3KRXG 1OMWG 4PNKG 4KFMG 5HE2G 3SN6G 3PVUG 5TDHG 1A0RG
chains in the Genus database with same CATH superfamily
3PVWG 5HE3G 5KDOG 3AH8G 1GG2G 2TRCG 1B9YB 1IOJA 3V5WG 2PBIA 1HFES 5HE1G 3KRWG 5HE0G 1TBGE 1XHMB 4MK0G 3PSCG 1B9XB 2BCJG 1GOTG 3CIKG 1GP2G 3KRXG 1OMWG 4PNKG 4KFMG 5HE2G 3SN6G 3PVUG 5TDHG 1A0RG
chains in the Genus database with same CATH topology
3PVWG 5HE3G 5KDOG 3AH8G 1GG2G 2TRCG 1B9YB 3V5WG 2PBIA 5HE1G 3KRWG 5HE0G 1TBGE 1XHMB 4MK0G 3PSCG 1B9XB 2BCJG 1GOTG 3CIKG 1GP2G 3KRXG 1OMWG 4PNKG 4KFMG 5HE2G 3SN6G 3PVUG 5TDHG 1A0RG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PVW G;  5HE3 G;  5KDO G;  3AH8 G;  1GG2 G;  2TRC G;  1B9Y B;  3V5W G;  2PBI A;  5HE1 G;  3KRW G;  5HE0 G;  1TBG E;  1XHM B;  4MK0 G;  3PSC G;  1B9X B;  2BCJ G;  1GOT G;  3CIK G;  1GP2 G;  3KRX G;  1OMW G;  4PNK G;  4KFM G;  5HE2 G;  3SN6 G;  3PVU G;  5TDH G;  1A0R G; 
#chains in the Genus database with same CATH topology
 3PVW G;  5HE3 G;  5KDO G;  3AH8 G;  1GG2 G;  2TRC G;  1B9Y B;  1IOJ A;  3V5W G;  2PBI A;  1HFE S;  5HE1 G;  3KRW G;  5HE0 G;  1TBG E;  1XHM B;  4MK0 G;  3PSC G;  1B9X B;  2BCJ G;  1GOT G;  3CIK G;  1GP2 G;  3KRX G;  1OMW G;  4PNK G;  4KFM G;  5HE2 G;  3SN6 G;  3PVU G;  5TDH G;  1A0R G; 
#chains in the Genus database with same CATH homology
 3PVW G;  5HE3 G;  5KDO G;  3AH8 G;  1GG2 G;  2TRC G;  1B9Y B;  3V5W G;  2PBI A;  5HE1 G;  3KRW G;  5HE0 G;  1TBG E;  1XHM B;  4MK0 G;  3PSC G;  1B9X B;  2BCJ G;  1GOT G;  3CIK G;  1GP2 G;  3KRX G;  1OMW G;  4PNK G;  4KFM G;  5HE2 G;  3SN6 G;  3PVU G;  5TDH G;  1A0R G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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