1BAZA

Arc repressor mutant phe10val
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
49
structure length
49
Chain Sequence
SKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Origins of DNA-binding specificity: role of protein contacts with the DNA backbone.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Transcription regulation
molecule keywords ARC REPRESSOR
total genus 15
structure length 49
sequence length 49
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1998-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03869 Arc Arc-like DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1bazA00
2BNWA 2BJ1A 3VEBA 1QTGA 2BJ9A 4D8JA 1BDVA 1MYLA 2BA3A 1X93A 2HZAA 2K1OA 1NLAA 1MNTA 1EA4A 4HV0A 3VW4A 2BSQE 2RBFA 2WVBA 1IRQA 2AY0A 1B01A 2BJ7A 1Q5VA 2JXHA 2K9IA 2WVFA 2H1OE 2JXIA 2WVCA 3FT7A 1BDTA 2WVEA 2CAJA 3QOQA 2CAXA 2JXGA 2K6LA 1PARA 2GPEA 1BAZA 2K29A 1U9PA 1P94A 3GXQA 2HZVA 3H87C 4FXEA 2BJ3A 3VEAA 2BNZA 4ME7E 1MYKA 2BJ8A 2CPGA 2KELA 2WVDA 3LGHA 3OD2A 1ARQA 1B28A 2K5JA 2CA9A 2CADA 3FMTA 1ARRA
chains in the Genus database with same CATH superfamily
2BNWA 3VEBA 2BJ9A 4LQ3A 1X93A 1EA4A 2Q2KA 3NAHA 2B43A 3UPFA 2K9IA 2JXHA 1BDTA 2CAJA 4NRTA 4AAIA 3H5XA 1BAZA 3BSNA 3GXQA 2BNZA 3LJPA 3OD2A 1ARQA 2KOEA 1Q16A 2UUWA 2BJ1A 2ADLA 1BDVA 3UQSA 1SIWA 2HZAA 1NLAA 2JBVA 2WVFA 2H1OE 1OHNA 2WVEA 2A2BA 2H3AA 1PARA 3IR7A 4FXEA 3G5OA 1MYKA 2BJ8A 2WVDA 3LGHA 1B28A 1SH0A 2UUTA 3H5YA 4D8JA 3BSOA 2BA3A 2K1OA 4O4RA 2BSQE 1IRQA 4LQ9A 3UR0A 2BJ7A 2JXIA 2CAXA 3FT7A 2JXGA 2K6LA 2CKWA 2WK4A 3SFUA 4QPXA 1P94A 3NO7A 2HZVA 3H87C 2BJ3A 1SH2A 4ME7E 4LRVA 2KELA 1SH3A 1OG7A 2K5JA 2CA9A 2CADA 3FMTA 3NAIA 1QTGA 1MYLA 1MNTA 2KKEA 4HV0A 3VW4A 2RBFA 2WVBA 2AY0A 4NRUA 1B01A 1Q5VA 2WVCA 3QOQA 3SFGA 2GPEA 4MJWA 2K29A 2AN7A 1U9PA 3VEAA 3QIDA 3NNEA 2CPGA 1ARRA
chains in the Genus database with same CATH topology
2BNWA 2BJ1A 3VEBA 1QTGA 2BJ9A 4D8JA 1BDVA 1MYLA 2BA3A 1X93A 2HZAA 2K1OA 1NLAA 1MNTA 1EA4A 4HV0A 3VW4A 2BSQE 2RBFA 2WVBA 1IRQA 2AY0A 1B01A 2BJ7A 1Q5VA 2JXHA 2K9IA 2WVFA 2H1OE 2JXIA 2WVCA 3FT7A 1BDTA 2WVEA 2CAJA 3QOQA 2CAXA 2JXGA 2K6LA 1PARA 2GPEA 1BAZA 2K29A 1U9PA 1P94A 3GXQA 2HZVA 3H87C 4FXEA 2BJ3A 3VEAA 2BNZA 4ME7E 1MYKA 2BJ8A 2CPGA 2KELA 2WVDA 3LGHA 3OD2A 1ARQA 1B28A 2K5JA 2CA9A 2CADA 3FMTA 1ARRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BNW A;  2BJ1 A;  3VEB A;  1QTG A;  2BJ9 A;  4D8J A;  1BDV A;  1MYL A;  2BA3 A;  1X93 A;  2HZA A;  2K1O A;  1NLA A;  1MNT A;  1EA4 A;  4HV0 A;  3VW4 A;  2BSQ E;  2RBF A;  2WVB A;  1IRQ A;  2AY0 A;  1B01 A;  2BJ7 A;  1Q5V A;  2JXH A;  2K9I A;  2WVF A;  2H1O E;  2JXI A;  2WVC A;  3FT7 A;  1BDT A;  2WVE A;  2CAJ A;  3QOQ A;  2CAX A;  2JXG A;  2K6L A;  1PAR A;  2GPE A;  1BAZ A;  2K29 A;  1U9P A;  1P94 A;  3GXQ A;  2HZV A;  3H87 C;  4FXE A;  2BJ3 A;  3VEA A;  2BNZ A;  4ME7 E;  1MYK A;  2BJ8 A;  2CPG A;  2KEL A;  2WVD A;  3LGH A;  3OD2 A;  1ARQ A;  1B28 A;  2K5J A;  2CA9 A;  2CAD A;  3FMT A;  1ARR A; 
#chains in the Genus database with same CATH topology
 2BNW A;  3VEB A;  2BJ9 A;  4LQ3 A;  1X93 A;  1EA4 A;  2Q2K A;  3NAH A;  2B43 A;  3UPF A;  2K9I A;  2JXH A;  1BDT A;  2CAJ A;  4NRT A;  4AAI A;  3H5X A;  1BAZ A;  3BSN A;  3GXQ A;  2BNZ A;  3LJP A;  3OD2 A;  1ARQ A;  2KOE A;  1Q16 A;  2UUW A;  2BJ1 A;  2ADL A;  1BDV A;  3UQS A;  1SIW A;  2HZA A;  1NLA A;  2JBV A;  2WVF A;  2H1O E;  1OHN A;  2WVE A;  2A2B A;  2H3A A;  1PAR A;  3IR7 A;  4FXE A;  3G5O A;  1MYK A;  2BJ8 A;  2WVD A;  3LGH A;  1B28 A;  1SH0 A;  2UUT A;  3H5Y A;  4D8J A;  3BSO A;  2BA3 A;  2K1O A;  4O4R A;  2BSQ E;  1IRQ A;  4LQ9 A;  3UR0 A;  2BJ7 A;  2JXI A;  2CAX A;  3FT7 A;  2JXG A;  2K6L A;  2CKW A;  2WK4 A;  3SFU A;  4QPX A;  1P94 A;  3NO7 A;  2HZV A;  3H87 C;  2BJ3 A;  1SH2 A;  4ME7 E;  4LRV A;  2KEL A;  1SH3 A;  1OG7 A;  2K5J A;  2CA9 A;  2CAD A;  3FMT A;  3NAI A;  1QTG A;  1MYL A;  1MNT A;  2KKE A;  4HV0 A;  3VW4 A;  2RBF A;  2WVB A;  2AY0 A;  4NRU A;  1B01 A;  1Q5V A;  2WVC A;  3QOQ A;  3SFG A;  2GPE A;  4MJW A;  2K29 A;  2AN7 A;  1U9P A;  3VEA A;  3QID A;  3NNE A;  2CPG A;  1ARR A; 
#chains in the Genus database with same CATH homology
 2BNW A;  2BJ1 A;  3VEB A;  1QTG A;  2BJ9 A;  4D8J A;  1BDV A;  1MYL A;  2BA3 A;  1X93 A;  2HZA A;  2K1O A;  1NLA A;  1MNT A;  1EA4 A;  4HV0 A;  3VW4 A;  2BSQ E;  2RBF A;  2WVB A;  1IRQ A;  2AY0 A;  1B01 A;  2BJ7 A;  1Q5V A;  2JXH A;  2K9I A;  2WVF A;  2H1O E;  2JXI A;  2WVC A;  3FT7 A;  1BDT A;  2WVE A;  2CAJ A;  3QOQ A;  2CAX A;  2JXG A;  2K6L A;  1PAR A;  2GPE A;  1BAZ A;  2K29 A;  1U9P A;  1P94 A;  3GXQ A;  2HZV A;  3H87 C;  4FXE A;  2BJ3 A;  3VEA A;  2BNZ A;  4ME7 E;  1MYK A;  2BJ8 A;  2CPG A;  2KEL A;  2WVD A;  3LGH A;  3OD2 A;  1ARQ A;  1B28 A;  2K5J A;  2CA9 A;  2CAD A;  3FMT A;  1ARR A; 
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