1BAZA

Arc repressor mutant phe10val
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
49
structure length
49
Chain Sequence
SKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Origins of DNA-binding specificity: role of protein contacts with the DNA backbone.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Transcription regulation
molecule keywords ARC REPRESSOR
total genus 15
structure length 49
sequence length 49
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1998-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03869 Arc Arc-like DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1bazA00
1QTGA 2WVCA 3H87C 2WVDA 4D8JA 2CAXA 1MYLA 2H1OE 1X93A 2K29A 3OD2A 2RBFA 2HZVA 1U9PA 1PARA 2K5JA 2GPEA 1MYKA 3LGHA 1ARQA 2BJ9A 2KELA 1B01A 1NLAA 2BNZA 2K9IA 1Q5VA 1MNTA 2CAJA 2WVBA 3VEBA 2BSQE 2K1OA 4FXEA 2WVFA 2BNWA 1B28A 1ARRA 1IRQA 2CA9A 3VW4A 4HV0A 2JXGA 2BJ1A 3QOQA 2BJ7A 3GXQA 2BA3A 1BDTA 2BJ8A 2JXIA 2BJ3A 1EA4A 1BDVA 2HZAA 1P94A 2CADA 2K6LA 2AY0A 1BAZA 2WVEA 3FT7A 3FMTA 4ME7E 2CPGA 2JXHA 3VEAA
chains in the Genus database with same CATH superfamily
2CAXA 3BSNA 4MJWA 2RBFA 4QPXA 1U9PA 3QIDA 2K5JA 2UUWA 1ARQA 1B01A 2K9IA 1Q5VA 2B43A 2BJ1A 2BJ7A 1BDTA 4LQ3A 2BJ3A 3NNEA 2CADA 2KOEA 2AY0A 2H3AA 4ME7E 1QTGA 4NRUA 1MYLA 3UQSA 2WK4A 3G5OA 3BSOA 2HZVA 4LRVA 3LGHA 2Q2KA 2KELA 2CKWA 2BNZA 2WVBA 3VEBA 2BSQE 2K1OA 4FXEA 1IRQA 2CA9A 2UUTA 4O4RA 4HV0A 2JXGA 3QOQA 3GXQA 2BA3A 3NAIA 2HZAA 1P94A 2K6LA 1BAZA 1Q16A 1SH3A 2WVDA 3UR0A 4D8JA 3OD2A 3H5YA 1OHNA 2GPEA 3SFUA 2BJ9A 3IR7A 4LQ9A 1NLAA 2CAJA 3NO7A 2KKEA 1ARRA 1SH2A 3UPFA 3VW4A 4NRTA 2A2BA 3NAHA 2BJ8A 2AN7A 1EA4A 2WVEA 3FT7A 2WVCA 3H87C 4AAIA 1OG7A 2H1OE 1X93A 1SH0A 1SIWA 3LJPA 2K29A 1PARA 1MYKA 1MNTA 2WVFA 2BNWA 1B28A 3H5XA 3SFGA 2JXIA 1BDVA 2ADLA 3FMTA 2JBVA 2CPGA 2JXHA 3VEAA
chains in the Genus database with same CATH topology
1QTGA 2WVCA 3H87C 2WVDA 4D8JA 2CAXA 1MYLA 2H1OE 1X93A 2K29A 3OD2A 2RBFA 2HZVA 1U9PA 1PARA 2K5JA 2GPEA 1MYKA 3LGHA 1ARQA 2BJ9A 2KELA 1B01A 1NLAA 2BNZA 2K9IA 1Q5VA 1MNTA 2CAJA 2WVBA 3VEBA 2BSQE 2K1OA 4FXEA 2WVFA 2BNWA 1B28A 1ARRA 1IRQA 2CA9A 3VW4A 4HV0A 2JXGA 2BJ1A 3QOQA 2BJ7A 3GXQA 2BA3A 1BDTA 2BJ8A 2JXIA 2BJ3A 1EA4A 1BDVA 2HZAA 1P94A 2CADA 2K6LA 2AY0A 1BAZA 2WVEA 3FT7A 3FMTA 4ME7E 2CPGA 2JXHA 3VEAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QTG A;  2WVC A;  3H87 C;  2WVD A;  4D8J A;  2CAX A;  1MYL A;  2H1O E;  1X93 A;  2K29 A;  3OD2 A;  2RBF A;  2HZV A;  1U9P A;  1PAR A;  2K5J A;  2GPE A;  1MYK A;  3LGH A;  1ARQ A;  2BJ9 A;  2KEL A;  1B01 A;  1NLA A;  2BNZ A;  2K9I A;  1Q5V A;  1MNT A;  2CAJ A;  2WVB A;  3VEB A;  2BSQ E;  2K1O A;  4FXE A;  2WVF A;  2BNW A;  1B28 A;  1ARR A;  1IRQ A;  2CA9 A;  3VW4 A;  4HV0 A;  2JXG A;  2BJ1 A;  3QOQ A;  2BJ7 A;  3GXQ A;  2BA3 A;  1BDT A;  2BJ8 A;  2JXI A;  2BJ3 A;  1EA4 A;  1BDV A;  2HZA A;  1P94 A;  2CAD A;  2K6L A;  2AY0 A;  1BAZ A;  2WVE A;  3FT7 A;  3FMT A;  4ME7 E;  2CPG A;  2JXH A;  3VEA A; 
#chains in the Genus database with same CATH topology
 2CAX A;  3BSN A;  4MJW A;  2RBF A;  4QPX A;  1U9P A;  3QID A;  2K5J A;  2UUW A;  1ARQ A;  1B01 A;  2K9I A;  1Q5V A;  2B43 A;  2BJ1 A;  2BJ7 A;  1BDT A;  4LQ3 A;  2BJ3 A;  3NNE A;  2CAD A;  2KOE A;  2AY0 A;  2H3A A;  4ME7 E;  1QTG A;  4NRU A;  1MYL A;  3UQS A;  2WK4 A;  3G5O A;  3BSO A;  2HZV A;  4LRV A;  3LGH A;  2Q2K A;  2KEL A;  2CKW A;  2BNZ A;  2WVB A;  3VEB A;  2BSQ E;  2K1O A;  4FXE A;  1IRQ A;  2CA9 A;  2UUT A;  4O4R A;  4HV0 A;  2JXG A;  3QOQ A;  3GXQ A;  2BA3 A;  3NAI A;  2HZA A;  1P94 A;  2K6L A;  1BAZ A;  1Q16 A;  1SH3 A;  2WVD A;  3UR0 A;  4D8J A;  3OD2 A;  3H5Y A;  1OHN A;  2GPE A;  3SFU A;  2BJ9 A;  3IR7 A;  4LQ9 A;  1NLA A;  2CAJ A;  3NO7 A;  2KKE A;  1ARR A;  1SH2 A;  3UPF A;  3VW4 A;  4NRT A;  2A2B A;  3NAH A;  2BJ8 A;  2AN7 A;  1EA4 A;  2WVE A;  3FT7 A;  2WVC A;  3H87 C;  4AAI A;  1OG7 A;  2H1O E;  1X93 A;  1SH0 A;  1SIW A;  3LJP A;  2K29 A;  1PAR A;  1MYK A;  1MNT A;  2WVF A;  2BNW A;  1B28 A;  3H5X A;  3SFG A;  2JXI A;  1BDV A;  2ADL A;  3FMT A;  2JBV A;  2CPG A;  2JXH A;  3VEA A; 
#chains in the Genus database with same CATH homology
 1QTG A;  2WVC A;  3H87 C;  2WVD A;  4D8J A;  2CAX A;  1MYL A;  2H1O E;  1X93 A;  2K29 A;  3OD2 A;  2RBF A;  2HZV A;  1U9P A;  1PAR A;  2K5J A;  2GPE A;  1MYK A;  3LGH A;  1ARQ A;  2BJ9 A;  2KEL A;  1B01 A;  1NLA A;  2BNZ A;  2K9I A;  1Q5V A;  1MNT A;  2CAJ A;  2WVB A;  3VEB A;  2BSQ E;  2K1O A;  4FXE A;  2WVF A;  2BNW A;  1B28 A;  1ARR A;  1IRQ A;  2CA9 A;  3VW4 A;  4HV0 A;  2JXG A;  2BJ1 A;  3QOQ A;  2BJ7 A;  3GXQ A;  2BA3 A;  1BDT A;  2BJ8 A;  2JXI A;  2BJ3 A;  1EA4 A;  1BDV A;  2HZA A;  1P94 A;  2CAD A;  2K6L A;  2AY0 A;  1BAZ A;  2WVE A;  3FT7 A;  3FMT A;  4ME7 E;  2CPG A;  2JXH A;  3VEA A; 
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