1BAZA

Arc repressor mutant phe10val
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
49
structure length
49
Chain Sequence
b'SKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ARC REPRESSOR
publication title Origins of DNA-binding specificity: role of protein contacts with the DNA backbone.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Transcription regulation
total genus 15
structure length 49
sequence length 49
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1998-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03869 Arc Arc-like DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 1bazA00
1MNTA 2BA3A 2K29A 2WVFA 2BJ8A 1ARRA 1U9PA 2WVDA 2CA9A 1BDTA 3LGHA 2CAXA 1Q5VA 2JXHA 2BJ1A 2BNZA 3OD2A 2CADA 1EA4A 2H1OE 2BNWA 1IRQA 3VEBA 2CPGA 2HZVA 4D8JA 2CAJA 2K9IA 1P94A 4FXEA 1B01A 3QOQA 4ME7E 3FMTA 3GXQA 1PARA 1MYKA 1BAZA 2K5JA 2WVBA 4HV0A 2BSQE 1X93A 1NLAA 1MYLA 2K1OA 3H87C 2BJ7A 2HZAA 2JXGA 2K6LA 2WVCA 2AY0A 2RBFA 2GPEA 3VEAA 2JXIA 3FT7A 2WVEA 3VW4A 2KELA 1B28A 2BJ3A 2BJ9A 1BDVA 1QTGA 1ARQA
chains in the Genus database with same CATH superfamily
1MNTA 4LQ3A 2CA9A 2UUWA 3NO7A 2JXHA 2BNZA 1EA4A 2H1OE 2HZVA 4D8JA 3BSNA 1B01A 1PARA 3GXQA 2H3AA 3IR7A 2WVBA 2JXGA 1Q16A 2KKEA 3VW4A 2BJ9A 2WVFA 1SH3A 1ARRA 1Q5VA 2BJ1A 2CKWA 4LRVA 3H5XA 3VEBA 4MJWA 2CAJA 1P94A 3NAIA 4LQ9A 4ME7E 3FMTA 1BAZA 2K5JA 2K1OA 2BSQE 2BJ7A 2HZAA 2WVCA 2RBFA 3UQSA 3FT7A 2WVEA 3SFGA 2KELA 1B28A 3SFUA 3NNEA 4AAIA 1U9PA 2WVDA 1BDTA 2Q2KA 4O4RA 3OD2A 3LJPA 3H5YA 2CPGA 4NRTA 1OHNA 2K9IA 4FXEA 3QOQA 2ADLA 1SH2A 3QIDA 1SIWA 4HV0A 3UPFA 3H87C 1X93A 1NLAA 2AN7A 3NAHA 4QPXA 3BSOA 2JXIA 2KOEA 2UUTA 2BJ3A 1QTGA 1ARQA 2BA3A 2K29A 2BJ8A 3LGHA 2CAXA 2CADA 2BNWA 1IRQA 1OG7A 1MYKA 3UR0A 1MYLA 3G5OA 2K6LA 1SH0A 2AY0A 2B43A 2GPEA 3VEAA 2WK4A 4NRUA 2A2BA 2JBVA 1BDVA
chains in the Genus database with same CATH topology
1MNTA 2BA3A 2K29A 2WVFA 2BJ8A 1ARRA 1U9PA 2WVDA 2CA9A 1BDTA 3LGHA 2CAXA 1Q5VA 2JXHA 2BJ1A 2BNZA 3OD2A 2CADA 1EA4A 2H1OE 2BNWA 1IRQA 3VEBA 2CPGA 2HZVA 4D8JA 2CAJA 2K9IA 1P94A 4FXEA 1B01A 3QOQA 4ME7E 3FMTA 3GXQA 1PARA 1MYKA 1BAZA 2K5JA 2WVBA 4HV0A 2BSQE 1X93A 1NLAA 1MYLA 2K1OA 3H87C 2BJ7A 2HZAA 2JXGA 2K6LA 2WVCA 2AY0A 2RBFA 2GPEA 3VEAA 2JXIA 3FT7A 2WVEA 3VW4A 2KELA 1B28A 2BJ3A 2BJ9A 1BDVA 1QTGA 1ARQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MNT A;  2BA3 A;  2K29 A;  2WVF A;  2BJ8 A;  1ARR A;  1U9P A;  2WVD A;  2CA9 A;  1BDT A;  3LGH A;  2CAX A;  1Q5V A;  2JXH A;  2BJ1 A;  2BNZ A;  3OD2 A;  2CAD A;  1EA4 A;  2H1O E;  2BNW A;  1IRQ A;  3VEB A;  2CPG A;  2HZV A;  4D8J A;  2CAJ A;  2K9I A;  1P94 A;  4FXE A;  1B01 A;  3QOQ A;  4ME7 E;  3FMT A;  3GXQ A;  1PAR A;  1MYK A;  1BAZ A;  2K5J A;  2WVB A;  4HV0 A;  2BSQ E;  1X93 A;  1NLA A;  1MYL A;  2K1O A;  3H87 C;  2BJ7 A;  2HZA A;  2JXG A;  2K6L A;  2WVC A;  2AY0 A;  2RBF A;  2GPE A;  3VEA A;  2JXI A;  3FT7 A;  2WVE A;  3VW4 A;  2KEL A;  1B28 A;  2BJ3 A;  2BJ9 A;  1BDV A;  1QTG A;  1ARQ A; 
#chains in the Genus database with same CATH topology
 1MNT A;  4LQ3 A;  2CA9 A;  2UUW A;  3NO7 A;  2JXH A;  2BNZ A;  1EA4 A;  2H1O E;  2HZV A;  4D8J A;  3BSN A;  1B01 A;  1PAR A;  3GXQ A;  2H3A A;  3IR7 A;  2WVB A;  2JXG A;  1Q16 A;  2KKE A;  3VW4 A;  2BJ9 A;  2WVF A;  1SH3 A;  1ARR A;  1Q5V A;  2BJ1 A;  2CKW A;  4LRV A;  3H5X A;  3VEB A;  4MJW A;  2CAJ A;  1P94 A;  3NAI A;  4LQ9 A;  4ME7 E;  3FMT A;  1BAZ A;  2K5J A;  2K1O A;  2BSQ E;  2BJ7 A;  2HZA A;  2WVC A;  2RBF A;  3UQS A;  3FT7 A;  2WVE A;  3SFG A;  2KEL A;  1B28 A;  3SFU A;  3NNE A;  4AAI A;  1U9P A;  2WVD A;  1BDT A;  2Q2K A;  4O4R A;  3OD2 A;  3LJP A;  3H5Y A;  2CPG A;  4NRT A;  1OHN A;  2K9I A;  4FXE A;  3QOQ A;  2ADL A;  1SH2 A;  3QID A;  1SIW A;  4HV0 A;  3UPF A;  3H87 C;  1X93 A;  1NLA A;  2AN7 A;  3NAH A;  4QPX A;  3BSO A;  2JXI A;  2KOE A;  2UUT A;  2BJ3 A;  1QTG A;  1ARQ A;  2BA3 A;  2K29 A;  2BJ8 A;  3LGH A;  2CAX A;  2CAD A;  2BNW A;  1IRQ A;  1OG7 A;  1MYK A;  3UR0 A;  1MYL A;  3G5O A;  2K6L A;  1SH0 A;  2AY0 A;  2B43 A;  2GPE A;  3VEA A;  2WK4 A;  4NRU A;  2A2B A;  2JBV A;  1BDV A; 
#chains in the Genus database with same CATH homology
 1MNT A;  2BA3 A;  2K29 A;  2WVF A;  2BJ8 A;  1ARR A;  1U9P A;  2WVD A;  2CA9 A;  1BDT A;  3LGH A;  2CAX A;  1Q5V A;  2JXH A;  2BJ1 A;  2BNZ A;  3OD2 A;  2CAD A;  1EA4 A;  2H1O E;  2BNW A;  1IRQ A;  3VEB A;  2CPG A;  2HZV A;  4D8J A;  2CAJ A;  2K9I A;  1P94 A;  4FXE A;  1B01 A;  3QOQ A;  4ME7 E;  3FMT A;  3GXQ A;  1PAR A;  1MYK A;  1BAZ A;  2K5J A;  2WVB A;  4HV0 A;  2BSQ E;  1X93 A;  1NLA A;  1MYL A;  2K1O A;  3H87 C;  2BJ7 A;  2HZA A;  2JXG A;  2K6L A;  2WVC A;  2AY0 A;  2RBF A;  2GPE A;  3VEA A;  2JXI A;  3FT7 A;  2WVE A;  3VW4 A;  2KEL A;  1B28 A;  2BJ3 A;  2BJ9 A;  1BDV A;  1QTG A;  1ARQ A; 
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