1BHDA

Second calponin homology domain from utrophin
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
108
structure length
108
Chain Sequence
LQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFEVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The 2.0 A structure of the second calponin homology domain from the actin-binding region of the dystrophin homologue utrophin.
pubmed doi rcsb
molecule tags Structural protein
source organism Homo sapiens
molecule keywords UTROPHIN
total genus 40
structure length 108
sequence length 108
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1bhdA00
3JAKM 1P2XA 1VKAA 2VZCA 1WIXA 2K3SA 4Q57B 3JALM 4EDMA 2EYNA 5A38A 1DXXA 2WFNA 1TJTA 4Q58A 1WYPA 5J8EA 3KMWB 2D86A 1MB8A 1P5SA 4TXIA 1AA2A 1SH6A 3HOPA 2D85A 2DK9A 2EYIA 5L0OA 1PA7A 2QJZA 1AOAA 3HORA 5A37A 2WA7A 2JV9A 2L3GA 5A36A 1WKUA 2K2RA 2WA5A 3F7PA 4EDLA 1UJOA 1QAGA 2YRNA 1H67A 1WYNA 1WYMA 1V5KA 1PXYA 2VZIB 1WYQA 4EDNA 2E9KA 3CO1A 2RR8A 2VZGB 1BHDA 2QJXA 2R8UA 3I6XA 1WYOA 5BVRA 3KY9A 2D87A 2WA6A 1UEGA 2VZDA 4TXKA 3FERA 2R0OA 4Q59A 1SH5A 2D88A 1WYLA 3KMUB 3REPB 3HOCA 5A4BA 1WJOA 2EE7A 1WYRA 1RT8A 2D89A 3JARM 4B7LA 1BKRA
chains in the Genus database with same CATH superfamily
3JAKM 1P2XA 2WDTA 1VKAA 2VZCA 1WIXA 2K3SA 4Q57B 3EAYA 3JALM 4EDMA 2EYNA 2VE7A 5A38A 1DXXA 2WFNA 1TJTA 4Q58A 1WYPA 5J8EA 3KMWB 2D86A 2HL9A 1MB8A 1P5SA 4TXIA 1AA2A 1SH6A 3HOPA 2D85A 2DK9A 2EYIA 5L0OA 1PA7A 2QJZA 1AOAA 3HORA 5A37A 2WA7A 2JV9A 2L3GA 5FMUA 5A36A 1WKUA 2K2RA 2WA5A 3F7PA 5FMTA 2EQOA 2HKPA 2HL8A 4EDLA 1UJOA 1QAGA 2YRNA 1H67A 1WYNA 1WYMA 1V5KA 1PXYA 2VZIB 1WYQA 4LVPA 4EDNA 2E9KA 3CO1A 2RR8A 1EUVA 2VZGB 1BHDA 2IGPA 2QJXA 2R8UA 3I6XA 1WYOA 3VP7A 5BVRA 3KY9A 2D87A 2WA6A 2WE6A 1UEGA 2VZDA 4TXKA 3FERA 2R0OA 4Q59A 4LVRA 1SH5A 2D88A 1WYLA 3KMUB 3REPB 3HOCA 5A4BA 4DDPA 1WJOA 2EE7A 1WYRA 1RT8A 2D89A 2VE7C 3JARM 4B7LA 1BKRA
chains in the Genus database with same CATH topology
3JAKM 1P2XA 1VKAA 2VZCA 1WIXA 2K3SA 4Q57B 3JALM 4EDMA 2EYNA 5A38A 1DXXA 2WFNA 1TJTA 4Q58A 1WYPA 5J8EA 3KMWB 2D86A 1MB8A 1P5SA 4TXIA 1AA2A 1SH6A 3HOPA 2D85A 2DK9A 2EYIA 5L0OA 1PA7A 2QJZA 1AOAA 3HORA 5A37A 2WA7A 2JV9A 2L3GA 5A36A 1WKUA 2K2RA 2WA5A 3F7PA 4EDLA 1UJOA 1QAGA 2YRNA 1H67A 1WYNA 1WYMA 1V5KA 1PXYA 2VZIB 1WYQA 4EDNA 2E9KA 3CO1A 2RR8A 2VZGB 1BHDA 2QJXA 2R8UA 3I6XA 1WYOA 5BVRA 3KY9A 2D87A 2WA6A 1UEGA 2VZDA 4TXKA 3FERA 2R0OA 4Q59A 1SH5A 2D88A 1WYLA 3KMUB 3REPB 3HOCA 5A4BA 1WJOA 2EE7A 1WYRA 1RT8A 2D89A 3JARM 4B7LA 1BKRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAK M;  1P2X A;  1VKA A;  2VZC A;  1WIX A;  2K3S A;  4Q57 B;  3JAL M;  4EDM A;  2EYN A;  5A38 A;  1DXX A;  2WFN A;  1TJT A;  4Q58 A;  1WYP A;  5J8E A;  3KMW B;  2D86 A;  1MB8 A;  1P5S A;  4TXI A;  1AA2 A;  1SH6 A;  3HOP A;  2D85 A;  2DK9 A;  2EYI A;  5L0O A;  1PA7 A;  2QJZ A;  1AOA A;  3HOR A;  5A37 A;  2WA7 A;  2JV9 A;  2L3G A;  5A36 A;  1WKU A;  2K2R A;  2WA5 A;  3F7P A;  4EDL A;  1UJO A;  1QAG A;  2YRN A;  1H67 A;  1WYN A;  1WYM A;  1V5K A;  1PXY A;  2VZI B;  1WYQ A;  4EDN A;  2E9K A;  3CO1 A;  2RR8 A;  2VZG B;  1BHD A;  2QJX A;  2R8U A;  3I6X A;  1WYO A;  5BVR A;  3KY9 A;  2D87 A;  2WA6 A;  1UEG A;  2VZD A;  4TXK A;  3FER A;  2R0O A;  4Q59 A;  1SH5 A;  2D88 A;  1WYL A;  3KMU B;  3REP B;  3HOC A;  5A4B A;  1WJO A;  2EE7 A;  1WYR A;  1RT8 A;  2D89 A;  3JAR M;  4B7L A;  1BKR A; 
#chains in the Genus database with same CATH topology
 3JAK M;  1P2X A;  2WDT A;  1VKA A;  2VZC A;  1WIX A;  2K3S A;  4Q57 B;  3EAY A;  3JAL M;  4EDM A;  2EYN A;  2VE7 A;  5A38 A;  1DXX A;  2WFN A;  1TJT A;  4Q58 A;  1WYP A;  5J8E A;  3KMW B;  2D86 A;  2HL9 A;  1MB8 A;  1P5S A;  4TXI A;  1AA2 A;  1SH6 A;  3HOP A;  2D85 A;  2DK9 A;  2EYI A;  5L0O A;  1PA7 A;  2QJZ A;  1AOA A;  3HOR A;  5A37 A;  2WA7 A;  2JV9 A;  2L3G A;  5FMU A;  5A36 A;  1WKU A;  2K2R A;  2WA5 A;  3F7P A;  5FMT A;  2EQO A;  2HKP A;  2HL8 A;  4EDL A;  1UJO A;  1QAG A;  2YRN A;  1H67 A;  1WYN A;  1WYM A;  1V5K A;  1PXY A;  2VZI B;  1WYQ A;  4LVP A;  4EDN A;  2E9K A;  3CO1 A;  2RR8 A;  1EUV A;  2VZG B;  1BHD A;  2IGP A;  2QJX A;  2R8U A;  3I6X A;  1WYO A;  3VP7 A;  5BVR A;  3KY9 A;  2D87 A;  2WA6 A;  2WE6 A;  1UEG A;  2VZD A;  4TXK A;  3FER A;  2R0O A;  4Q59 A;  4LVR A;  1SH5 A;  2D88 A;  1WYL A;  3KMU B;  3REP B;  3HOC A;  5A4B A;  4DDP A;  1WJO A;  2EE7 A;  1WYR A;  1RT8 A;  2D89 A;  2VE7 C;  3JAR M;  4B7L A;  1BKR A; 
#chains in the Genus database with same CATH homology
 3JAK M;  1P2X A;  1VKA A;  2VZC A;  1WIX A;  2K3S A;  4Q57 B;  3JAL M;  4EDM A;  2EYN A;  5A38 A;  1DXX A;  2WFN A;  1TJT A;  4Q58 A;  1WYP A;  5J8E A;  3KMW B;  2D86 A;  1MB8 A;  1P5S A;  4TXI A;  1AA2 A;  1SH6 A;  3HOP A;  2D85 A;  2DK9 A;  2EYI A;  5L0O A;  1PA7 A;  2QJZ A;  1AOA A;  3HOR A;  5A37 A;  2WA7 A;  2JV9 A;  2L3G A;  5A36 A;  1WKU A;  2K2R A;  2WA5 A;  3F7P A;  4EDL A;  1UJO A;  1QAG A;  2YRN A;  1H67 A;  1WYN A;  1WYM A;  1V5K A;  1PXY A;  2VZI B;  1WYQ A;  4EDN A;  2E9K A;  3CO1 A;  2RR8 A;  2VZG B;  1BHD A;  2QJX A;  2R8U A;  3I6X A;  1WYO A;  5BVR A;  3KY9 A;  2D87 A;  2WA6 A;  1UEG A;  2VZD A;  4TXK A;  3FER A;  2R0O A;  4Q59 A;  1SH5 A;  2D88 A;  1WYL A;  3KMU B;  3REP B;  3HOC A;  5A4B A;  1WJO A;  2EE7 A;  1WYR A;  1RT8 A;  2D89 A;  3JAR M;  4B7L A;  1BKR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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