1BHDA

Second calponin homology domain from utrophin
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
108
structure length
108
Chain Sequence
LQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFEVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein
molecule keywords UTROPHIN
publication title The 2.0 A structure of the second calponin homology domain from the actin-binding region of the dystrophin homologue utrophin.
pubmed doi rcsb
source organism Homo sapiens
total genus 40
structure length 108
sequence length 108
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1bhdA00
2E9KA 3CO1A 2VZCA 4Q59A 2WA6A 1WKUA 1V5KA 1AA2A 2DK9A 3KY9A 3JALM 4EDNA 1BHDA 2RR8A 2R8UA 2VZIB 1WJOA 1UJOA 2WA5A 5J8EA 2WA7A 3KMUB 1VKAA 3JAKM 1UEGA 3JARM 2EE7A 2D88A 3HORA 1WYOA 1WIXA 4EDMA 4TXIA 1WYPA 1WYRA 2R0OA 3REPB 1WYLA 3FERA 5A4BA 5A37A 1MB8A 1AOAA 1SH6A 1PA7A 2WFNA 5A38A 2JV9A 2EYIA 2L3GA 4B7LA 1PXYA 1DXXA 2D86A 1WYQA 1QAGA 2K2RA 3HOPA 1WYNA 4TXKA 2EYNA 3I6XA 1WYMA 4EDLA 1TJTA 1BKRA 4Q57B 2D85A 2K3SA 2QJZA 2QJXA 5BVRA 1P5SA 1P2XA 2D89A 4Q58A 1SH5A 3HOCA 5L0OA 2D87A 2YRNA 1RT8A 3F7PA 1H67A 3KMWB 5A36A 2VZDA 2VZGB
chains in the Genus database with same CATH superfamily
2E9KA 3CO1A 2VZCA 2IGPA 4Q59A 2WA6A 1WKUA 1V5KA 1AA2A 2DK9A 3KY9A 3JALM 4EDNA 1BHDA 2EQOA 2RR8A 2R8UA 2VZIB 1WJOA 1UJOA 2WA5A 5J8EA 2WA7A 3KMUB 1VKAA 3EAYA 2HL9A 3JAKM 1UEGA 3JARM 2EE7A 2D88A 3HORA 4LVPA 1WYOA 1WIXA 4EDMA 4TXIA 1WYPA 2HL8A 4LVRA 3VP7A 1WYRA 2R0OA 3REPB 2VE7A 2VE7C 1WYLA 3FERA 1EUVA 2WE6A 5A4BA 5A37A 1MB8A 1AOAA 1SH6A 1PA7A 2WFNA 5A38A 2JV9A 2EYIA 2L3GA 4B7LA 1PXYA 1DXXA 2D86A 1WYQA 1QAGA 2K2RA 3HOPA 1WYNA 4TXKA 2EYNA 3I6XA 1WYMA 4EDLA 1TJTA 1BKRA 4Q57B 2D85A 2K3SA 2QJZA 2QJXA 5BVRA 1P5SA 1P2XA 2D89A 2WDTA 1SH5A 4Q58A 3HOCA 5FMUA 5L0OA 2D87A 2YRNA 5FMTA 1RT8A 3F7PA 1H67A 3KMWB 2HKPA 5A36A 2VZDA 2VZGB 4DDPA
chains in the Genus database with same CATH topology
2E9KA 3CO1A 2VZCA 4Q59A 2WA6A 1WKUA 1V5KA 1AA2A 2DK9A 3KY9A 3JALM 4EDNA 1BHDA 2RR8A 2R8UA 2VZIB 1WJOA 1UJOA 2WA5A 5J8EA 2WA7A 3KMUB 1VKAA 3JAKM 1UEGA 3JARM 2EE7A 2D88A 3HORA 1WYOA 1WIXA 4EDMA 4TXIA 1WYPA 1WYRA 2R0OA 3REPB 1WYLA 3FERA 5A4BA 5A37A 1MB8A 1AOAA 1SH6A 1PA7A 2WFNA 5A38A 2JV9A 2EYIA 2L3GA 4B7LA 1PXYA 1DXXA 2D86A 1WYQA 1QAGA 2K2RA 3HOPA 1WYNA 4TXKA 2EYNA 3I6XA 1WYMA 4EDLA 1TJTA 1BKRA 4Q57B 2D85A 2K3SA 2QJZA 2QJXA 5BVRA 1P5SA 1P2XA 2D89A 4Q58A 1SH5A 3HOCA 5L0OA 2D87A 2YRNA 1RT8A 3F7PA 1H67A 3KMWB 5A36A 2VZDA 2VZGB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E9K A;  3CO1 A;  2VZC A;  4Q59 A;  2WA6 A;  1WKU A;  1V5K A;  1AA2 A;  2DK9 A;  3KY9 A;  3JAL M;  4EDN A;  1BHD A;  2RR8 A;  2R8U A;  2VZI B;  1WJO A;  1UJO A;  2WA5 A;  5J8E A;  2WA7 A;  3KMU B;  1VKA A;  3JAK M;  1UEG A;  3JAR M;  2EE7 A;  2D88 A;  3HOR A;  1WYO A;  1WIX A;  4EDM A;  4TXI A;  1WYP A;  1WYR A;  2R0O A;  3REP B;  1WYL A;  3FER A;  5A4B A;  5A37 A;  1MB8 A;  1AOA A;  1SH6 A;  1PA7 A;  2WFN A;  5A38 A;  2JV9 A;  2EYI A;  2L3G A;  4B7L A;  1PXY A;  1DXX A;  2D86 A;  1WYQ A;  1QAG A;  2K2R A;  3HOP A;  1WYN A;  4TXK A;  2EYN A;  3I6X A;  1WYM A;  4EDL A;  1TJT A;  1BKR A;  4Q57 B;  2D85 A;  2K3S A;  2QJZ A;  2QJX A;  5BVR A;  1P5S A;  1P2X A;  2D89 A;  4Q58 A;  1SH5 A;  3HOC A;  5L0O A;  2D87 A;  2YRN A;  1RT8 A;  3F7P A;  1H67 A;  3KMW B;  5A36 A;  2VZD A;  2VZG B; 
#chains in the Genus database with same CATH topology
 2E9K A;  3CO1 A;  2VZC A;  2IGP A;  4Q59 A;  2WA6 A;  1WKU A;  1V5K A;  1AA2 A;  2DK9 A;  3KY9 A;  3JAL M;  4EDN A;  1BHD A;  2EQO A;  2RR8 A;  2R8U A;  2VZI B;  1WJO A;  1UJO A;  2WA5 A;  5J8E A;  2WA7 A;  3KMU B;  1VKA A;  3EAY A;  2HL9 A;  3JAK M;  1UEG A;  3JAR M;  2EE7 A;  2D88 A;  3HOR A;  4LVP A;  1WYO A;  1WIX A;  4EDM A;  4TXI A;  1WYP A;  2HL8 A;  4LVR A;  3VP7 A;  1WYR A;  2R0O A;  3REP B;  2VE7 A;  2VE7 C;  1WYL A;  3FER A;  1EUV A;  2WE6 A;  5A4B A;  5A37 A;  1MB8 A;  1AOA A;  1SH6 A;  1PA7 A;  2WFN A;  5A38 A;  2JV9 A;  2EYI A;  2L3G A;  4B7L A;  1PXY A;  1DXX A;  2D86 A;  1WYQ A;  1QAG A;  2K2R A;  3HOP A;  1WYN A;  4TXK A;  2EYN A;  3I6X A;  1WYM A;  4EDL A;  1TJT A;  1BKR A;  4Q57 B;  2D85 A;  2K3S A;  2QJZ A;  2QJX A;  5BVR A;  1P5S A;  1P2X A;  2D89 A;  2WDT A;  1SH5 A;  4Q58 A;  3HOC A;  5FMU A;  5L0O A;  2D87 A;  2YRN A;  5FMT A;  1RT8 A;  3F7P A;  1H67 A;  3KMW B;  2HKP A;  5A36 A;  2VZD A;  2VZG B;  4DDP A; 
#chains in the Genus database with same CATH homology
 2E9K A;  3CO1 A;  2VZC A;  4Q59 A;  2WA6 A;  1WKU A;  1V5K A;  1AA2 A;  2DK9 A;  3KY9 A;  3JAL M;  4EDN A;  1BHD A;  2RR8 A;  2R8U A;  2VZI B;  1WJO A;  1UJO A;  2WA5 A;  5J8E A;  2WA7 A;  3KMU B;  1VKA A;  3JAK M;  1UEG A;  3JAR M;  2EE7 A;  2D88 A;  3HOR A;  1WYO A;  1WIX A;  4EDM A;  4TXI A;  1WYP A;  1WYR A;  2R0O A;  3REP B;  1WYL A;  3FER A;  5A4B A;  5A37 A;  1MB8 A;  1AOA A;  1SH6 A;  1PA7 A;  2WFN A;  5A38 A;  2JV9 A;  2EYI A;  2L3G A;  4B7L A;  1PXY A;  1DXX A;  2D86 A;  1WYQ A;  1QAG A;  2K2R A;  3HOP A;  1WYN A;  4TXK A;  2EYN A;  3I6X A;  1WYM A;  4EDL A;  1TJT A;  1BKR A;  4Q57 B;  2D85 A;  2K3S A;  2QJZ A;  2QJX A;  5BVR A;  1P5S A;  1P2X A;  2D89 A;  4Q58 A;  1SH5 A;  3HOC A;  5L0O A;  2D87 A;  2YRN A;  1RT8 A;  3F7P A;  1H67 A;  3KMW B;  5A36 A;  2VZD A;  2VZG B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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