1BHMA

Restriction endonuclease bamhi complex with dna
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
198
structure length
198
Chain Sequence
MEVEKEFITDEAKELLSKDKLIQQAYNEVKTSICSPIWPATSKTFTINNTEKNCNGVVPIKELCYTLLEDTYNWYREKPLDILKLEKKKGGPIDVYKEFIENSELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAYYLTDRVTNFEELEPYFELTEGQPFIFIGFNAEAYNSNVPLIPKGSDGM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
source organism Bacillus amyloliquefaciens
publication title Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding.
pubmed rcsb
molecule keywords DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3')
total genus 62
structure length 198
sequence length 198
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 1995-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02923 BamHI Restriction endonuclease BamHI
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.20 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 1bhmA00
2BAMA 1BHMA 2P0JA 1D2IA 1DFMA 3BAMA 1VRRA 1ES8A 1ESGA 3ODHA 1SDOA 1BAMA
chains in the Genus database with same CATH superfamily
3V21A 5D42A 4AWHA 3WVHA 1ES8A 1BHMA 2P0JA 3BAMA 4AVQA 5CCYA 3DVOA 3WVPA 4AWFA 1D2IA 2P14A 5D4GA 5FDDA 5D2OA 1SDOA 4YYLA 5DEBA 5CL0A 5DESA 3EBJA 4AVLA 4ZQQA 3HW5A 3V20A 2XI5A 5I13A 1DC1A 4AVGA 3MQYA 1DFMA 4AWKA 1ESGA 1VRRA 3HW6A 5EGAA 4F0PA 2GB7A 4E5JA 2E52A 4E5LA 1M0DA 3A4KA 5CGVA 5D9JA 5DBSA 5CZNA 3WVKA 3BM3A 4E5IA 5D8UA 3N7BA 4E5FA 5JHVA 4E5EA 1KNVA 4E5GA 4AWGA 5FDGA 1FOKA 2BAMA 4CGSA 4ZI0A 3HW3A 4F0QA 1M0IA 4AWMA 2EWFA 4OC8A 4CGXA 2FQZA 3WVIA 1FZRA 2PFJA 3N78A 4E5HA 4CHCA 3WVGA 3ODHA 1CFRA 3V1ZA 3MQ6A 2XI7A 3CAEA 3DPGA 5JHTA 4ZHZA 4R28A 2FOKA 4NFZA 3DW9A 1BAMA 3HW4A
chains in the Genus database with same CATH topology
3V21A 5D42A 4AWHA 3WVHA 1ES8A 1BHMA 2P0JA 3BAMA 4AVQA 5CCYA 3DVOA 3WVPA 4AWFA 1D2IA 2P14A 5D4GA 5FDDA 5D2OA 1SDOA 4YYLA 5DEBA 5CL0A 5DESA 3EBJA 4AVLA 4ZQQA 3HW5A 3V20A 2XI5A 5I13A 1DC1A 4AVGA 3MQYA 1DFMA 4AWKA 1ESGA 1VRRA 3HW6A 5EGAA 4F0PA 2GB7A 4E5JA 2E52A 4E5LA 1M0DA 3A4KA 5CGVA 5D9JA 5DBSA 5CZNA 3WVKA 3BM3A 4E5IA 5D8UA 3N7BA 4E5FA 5JHVA 4E5EA 1KNVA 4E5GA 4AWGA 5FDGA 1FOKA 2BAMA 4CGSA 4ZI0A 3HW3A 4F0QA 1M0IA 4AWMA 2EWFA 4OC8A 4CGXA 2FQZA 3WVIA 1FZRA 2PFJA 3N78A 4E5HA 4CHCA 3WVGA 3ODHA 1CFRA 3V1ZA 3MQ6A 2XI7A 3CAEA 3DPGA 5JHTA 4ZHZA 4R28A 2FOKA 4NFZA 3DW9A 1BAMA 3HW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BAM A;  1BHM A;  2P0J A;  1D2I A;  1DFM A;  3BAM A;  1VRR A;  1ES8 A;  1ESG A;  3ODH A;  1SDO A;  1BAM A; 
#chains in the Genus database with same CATH topology
 3V21 A;  5D42 A;  4AWH A;  3WVH A;  1ES8 A;  1BHM A;  2P0J A;  3BAM A;  4AVQ A;  5CCY A;  3DVO A;  3WVP A;  4AWF A;  1D2I A;  2P14 A;  5D4G A;  5FDD A;  5D2O A;  1SDO A;  4YYL A;  5DEB A;  5CL0 A;  5DES A;  3EBJ A;  4AVL A;  4ZQQ A;  3HW5 A;  3V20 A;  2XI5 A;  5I13 A;  1DC1 A;  4AVG A;  3MQY A;  1DFM A;  4AWK A;  1ESG A;  1VRR A;  3HW6 A;  5EGA A;  4F0P A;  2GB7 A;  4E5J A;  2E52 A;  4E5L A;  1M0D A;  3A4K A;  5CGV A;  5D9J A;  5DBS A;  5CZN A;  3WVK A;  3BM3 A;  4E5I A;  5D8U A;  3N7B A;  4E5F A;  5JHV A;  4E5E A;  1KNV A;  4E5G A;  4AWG A;  5FDG A;  1FOK A;  2BAM A;  4CGS A;  4ZI0 A;  3HW3 A;  4F0Q A;  1M0I A;  4AWM A;  2EWF A;  4OC8 A;  4CGX A;  2FQZ A;  3WVI A;  1FZR A;  2PFJ A;  3N78 A;  4E5H A;  4CHC A;  3WVG A;  3ODH A;  1CFR A;  3V1Z A;  3MQ6 A;  2XI7 A;  3CAE A;  3DPG A;  5JHT A;  4ZHZ A;  4R28 A;  2FOK A;  4NFZ A;  3DW9 A;  1BAM A;  3HW4 A; 
#chains in the Genus database with same CATH homology
 3V21 A;  5D42 A;  4AWH A;  3WVH A;  1ES8 A;  1BHM A;  2P0J A;  3BAM A;  4AVQ A;  5CCY A;  3DVO A;  3WVP A;  4AWF A;  1D2I A;  2P14 A;  5D4G A;  5FDD A;  5D2O A;  1SDO A;  4YYL A;  5DEB A;  5CL0 A;  5DES A;  3EBJ A;  4AVL A;  4ZQQ A;  3HW5 A;  3V20 A;  2XI5 A;  5I13 A;  1DC1 A;  4AVG A;  3MQY A;  1DFM A;  4AWK A;  1ESG A;  1VRR A;  3HW6 A;  5EGA A;  4F0P A;  2GB7 A;  4E5J A;  2E52 A;  4E5L A;  1M0D A;  3A4K A;  5CGV A;  5D9J A;  5DBS A;  5CZN A;  3WVK A;  3BM3 A;  4E5I A;  5D8U A;  3N7B A;  4E5F A;  5JHV A;  4E5E A;  1KNV A;  4E5G A;  4AWG A;  5FDG A;  1FOK A;  2BAM A;  4CGS A;  4ZI0 A;  3HW3 A;  4F0Q A;  1M0I A;  4AWM A;  2EWF A;  4OC8 A;  4CGX A;  2FQZ A;  3WVI A;  1FZR A;  2PFJ A;  3N78 A;  4E5H A;  4CHC A;  3WVG A;  3ODH A;  1CFR A;  3V1Z A;  3MQ6 A;  2XI7 A;  3CAE A;  3DPG A;  5JHT A;  4ZHZ A;  4R28 A;  2FOK A;  4NFZ A;  3DW9 A;  1BAM A;  3HW4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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