1BI6H

Nmr structure of bromelain inhibitor vi from pineapple stem
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
41
structure length
41
Chain Sequence
EEYKCYCTDTYSDCPGFCKTCKAEFGKYICLDLISPNDCVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cysteine protease inhibitor
molecule keywords BROMELAIN INHIBITOR VI
publication title Solution structure of bromelain inhibitor IV from pineapple stem: structural similarity with Bowman-Birk trypsin/chymotrypsin inhibitor from soybean.
pubmed doi rcsb
total genus 4
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 1995-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF11405 Inhibitor_I67 Bromelain inhibitor VI
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.69.10 Mainly Beta Ribbon Cysteine Protease (Bromelain) Inhibitor, subunit H Cysteine Protease (Bromelain) Inhibitor, subunit H 1bi6H00
2G81I 1BI6H 2ILNI 1MVZA 2AIHA 2R33A 5J4SB 1D6RI 1K9BA 1PI2A 1C2AA 5J4QB 1PBIA 3RU4B 2BI6H 1BBIA 1H34A 2FJ8A 1TX6I 2QN5B 3MYWI 2BBIA
chains in the Genus database with same CATH superfamily
2G81I 1BI6H 2ILNI 1MVZA 2AIHA 2R33A 5J4SB 1D6RI 1K9BA 1PI2A 1C2AA 5J4QB 1PBIA 3RU4B 2BI6H 1BBIA 1H34A 2FJ8A 1TX6I 2QN5B 3MYWI 2BBIA
chains in the Genus database with same CATH topology
2G81I 1BI6H 2ILNI 1MVZA 2AIHA 2R33A 5J4SB 1D6RI 1K9BA 1PI2A 1C2AA 5J4QB 1PBIA 3RU4B 2BI6H 1BBIA 1H34A 2FJ8A 1TX6I 2QN5B 3MYWI 2BBIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G81 I;  1BI6 H;  2ILN I;  1MVZ A;  2AIH A;  2R33 A;  5J4S B;  1D6R I;  1K9B A;  1PI2 A;  1C2A A;  5J4Q B;  1PBI A;  3RU4 B;  2BI6 H;  1BBI A;  1H34 A;  2FJ8 A;  1TX6 I;  2QN5 B;  3MYW I;  2BBI A; 
#chains in the Genus database with same CATH topology
 2G81 I;  1BI6 H;  2ILN I;  1MVZ A;  2AIH A;  2R33 A;  5J4S B;  1D6R I;  1K9B A;  1PI2 A;  1C2A A;  5J4Q B;  1PBI A;  3RU4 B;  2BI6 H;  1BBI A;  1H34 A;  2FJ8 A;  1TX6 I;  2QN5 B;  3MYW I;  2BBI A; 
#chains in the Genus database with same CATH homology
 2G81 I;  1BI6 H;  2ILN I;  1MVZ A;  2AIH A;  2R33 A;  5J4S B;  1D6R I;  1K9B A;  1PI2 A;  1C2A A;  5J4Q B;  1PBI A;  3RU4 B;  2BI6 H;  1BBI A;  1H34 A;  2FJ8 A;  1TX6 I;  2QN5 B;  3MYW I;  2BBI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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