1BKJA

Nadph:fmn oxidoreductase from vibrio harveyi
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
239
structure length
230
Chain Sequence
NNTIETILAHRSIRKFTAVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAGNQAYVESAAEFLVFCIDYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPENSAVLFGMCLGHPDQNPEVKPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYYSTWSQEVTGKLAGESRPHILPYLNSKGLAKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NADPH-FLAVIN OXIDOREDUCTASE
publication title Flavin reductase P: structure of a dimeric enzyme that reduces flavin.
pubmed doi rcsb
source organism Vibrio harveyi
total genus 74
structure length 230
sequence length 239
chains with identical sequence B
ec nomenclature ec 1.5.1.38: FMN reductase (NADPH).
pdb deposition date 1998-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1bkjA00
3GH8A 4QLXA 3PXVA 2HAYA 5KRDA 1OO5A 2B67A 1OONA 3K6HA 3OF4A 2H0UA 4DN2A 2R01A 4TTCA 1ICUA 5KO7A 1NOXA 4XOMA 3BM1A 3H4OA 3EK3A 3KWKA 2I7HA 3GFAA 3TNZA 3GE6A 1V5ZA 2ISKA 1KQCA 3GE5A 3TO0A 2IFAA 3GR3A 3HJ9A 4XOQA 3E10A 1YKIA 5KO8A 2WQFA 2WZVA 1ICRA 1YWQA 3BM2A 4QLYA 4BNBA 1YLUA 3EO8A 4EO3A 3GBHA 1ICVA 3X21A 3BEMA 3KOQA 2ISLA 1KQBA 3GB5A 4BN8A 3HOIA 1NECA 2YMVA 1ZCHA 3G14A 2ISJA 3X22A 3N2SA 1V5YA 2BKJA 4BN9A 2WZWA 3EOFA 4BN7A 1IDTA 1VFRA 1OOQA 1F5VA 3M5KA 4URPA 3EO7A 1DS7A 4XOOA 5HDJA 3HZNA 1YLRA 5HEIA 3E39A 4G8SA 1OO6A 3GAGA 3GFDA 1KQDA 1VKWA 4BN6A 2FREA 5J6CA 4TTBA 3QDLA 1BKJA
chains in the Genus database with same CATH superfamily
3GH8A 4QLXA 3PXVA 2HAYA 5KRDA 1OO5A 2B67A 1OONA 3K6HA 3OF4A 2H0UA 4DN2A 2R01A 4TTCA 1ICUA 5KO7A 1NOXA 4XOMA 3BM1A 3H4OA 3EK3A 3KWKA 2I7HA 3GFAA 3TNZA 3GE6A 1V5ZA 2ISKA 1KQCA 3GE5A 3TO0A 2IFAA 3GR3A 3HJ9A 4XOQA 3E10A 1YKIA 5KO8A 2WQFA 2WZVA 1ICRA 1YWQA 3BM2A 4QLYA 4BNBA 1YLUA 3EO8A 4EO3A 3GBHA 1ICVA 3X21A 3BEMA 3KOQA 2ISLA 1KQBA 3GB5A 4BN8A 3HOIA 1NECA 2YMVA 1ZCHA 3G14A 2ISJA 3X22A 3N2SA 1V5YA 2BKJA 4BN9A 1J6RA 2WZWA 3EOFA 4BN7A 1IDTA 1VFRA 1OOQA 1F5VA 3M5KA 4URPA 3EO7A 1DS7A 4XOOA 5HDJA 3HZNA 1YLRA 5HEIA 3E39A 4G8SA 1OO6A 3GAGA 3GFDA 1KQDA 1VKWA 4BN6A 2FREA 5J6CA 4TTBA 3QDLA 1BKJA
chains in the Genus database with same CATH topology
3GH8A 4QLXA 3PXVA 2HAYA 5KRDA 1OO5A 2B67A 1OONA 3K6HA 3OF4A 2H0UA 4DN2A 2R01A 4TTCA 1ICUA 5KO7A 1NOXA 4XOMA 3BM1A 3H4OA 3EK3A 3KWKA 2I7HA 3GFAA 3TNZA 3GE6A 1V5ZA 2ISKA 1KQCA 3GE5A 3TO0A 2IFAA 3GR3A 3HJ9A 4XOQA 3E10A 1YKIA 5KO8A 2WQFA 2WZVA 1ICRA 1YWQA 3BM2A 4QLYA 4BNBA 1YLUA 3EO8A 4EO3A 3GBHA 1ICVA 3X21A 3BEMA 3KOQA 2ISLA 1KQBA 3GB5A 4BN8A 3HOIA 1NECA 2YMVA 1ZCHA 3G14A 2ISJA 3X22A 3N2SA 1V5YA 2BKJA 4BN9A 1J6RA 2WZWA 3EOFA 4BN7A 1IDTA 1VFRA 1OOQA 1F5VA 3M5KA 4URPA 3EO7A 1DS7A 4XOOA 5HDJA 3HZNA 1YLRA 5HEIA 3E39A 4G8SA 1OO6A 3GAGA 3GFDA 1KQDA 1VKWA 4BN6A 2FREA 5J6CA 4TTBA 3QDLA 1BKJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GH8 A;  4QLX A;  3PXV A;  2HAY A;  5KRD A;  1OO5 A;  2B67 A;  1OON A;  3K6H A;  3OF4 A;  2H0U A;  4DN2 A;  2R01 A;  4TTC A;  1ICU A;  5KO7 A;  1NOX A;  4XOM A;  3BM1 A;  3H4O A;  3EK3 A;  3KWK A;  2I7H A;  3GFA A;  3TNZ A;  3GE6 A;  1V5Z A;  2ISK A;  1KQC A;  3GE5 A;  3TO0 A;  2IFA A;  3GR3 A;  3HJ9 A;  4XOQ A;  3E10 A;  1YKI A;  5KO8 A;  2WQF A;  2WZV A;  1ICR A;  1YWQ A;  3BM2 A;  4QLY A;  4BNB A;  1YLU A;  3EO8 A;  4EO3 A;  3GBH A;  1ICV A;  3X21 A;  3BEM A;  3KOQ A;  2ISL A;  1KQB A;  3GB5 A;  4BN8 A;  3HOI A;  1NEC A;  2YMV A;  1ZCH A;  3G14 A;  2ISJ A;  3X22 A;  3N2S A;  1V5Y A;  2BKJ A;  4BN9 A;  2WZW A;  3EOF A;  4BN7 A;  1IDT A;  1VFR A;  1OOQ A;  1F5V A;  3M5K A;  4URP A;  3EO7 A;  1DS7 A;  4XOO A;  5HDJ A;  3HZN A;  1YLR A;  5HEI A;  3E39 A;  4G8S A;  1OO6 A;  3GAG A;  3GFD A;  1KQD A;  1VKW A;  4BN6 A;  2FRE A;  5J6C A;  4TTB A;  3QDL A;  1BKJ A; 
#chains in the Genus database with same CATH topology
 3GH8 A;  4QLX A;  3PXV A;  2HAY A;  5KRD A;  1OO5 A;  2B67 A;  1OON A;  3K6H A;  3OF4 A;  2H0U A;  4DN2 A;  2R01 A;  4TTC A;  1ICU A;  5KO7 A;  1NOX A;  4XOM A;  3BM1 A;  3H4O A;  3EK3 A;  3KWK A;  2I7H A;  3GFA A;  3TNZ A;  3GE6 A;  1V5Z A;  2ISK A;  1KQC A;  3GE5 A;  3TO0 A;  2IFA A;  3GR3 A;  3HJ9 A;  4XOQ A;  3E10 A;  1YKI A;  5KO8 A;  2WQF A;  2WZV A;  1ICR A;  1YWQ A;  3BM2 A;  4QLY A;  4BNB A;  1YLU A;  3EO8 A;  4EO3 A;  3GBH A;  1ICV A;  3X21 A;  3BEM A;  3KOQ A;  2ISL A;  1KQB A;  3GB5 A;  4BN8 A;  3HOI A;  1NEC A;  2YMV A;  1ZCH A;  3G14 A;  2ISJ A;  3X22 A;  3N2S A;  1V5Y A;  2BKJ A;  4BN9 A;  1J6R A;  2WZW A;  3EOF A;  4BN7 A;  1IDT A;  1VFR A;  1OOQ A;  1F5V A;  3M5K A;  4URP A;  3EO7 A;  1DS7 A;  4XOO A;  5HDJ A;  3HZN A;  1YLR A;  5HEI A;  3E39 A;  4G8S A;  1OO6 A;  3GAG A;  3GFD A;  1KQD A;  1VKW A;  4BN6 A;  2FRE A;  5J6C A;  4TTB A;  3QDL A;  1BKJ A; 
#chains in the Genus database with same CATH homology
 3GH8 A;  4QLX A;  3PXV A;  2HAY A;  5KRD A;  1OO5 A;  2B67 A;  1OON A;  3K6H A;  3OF4 A;  2H0U A;  4DN2 A;  2R01 A;  4TTC A;  1ICU A;  5KO7 A;  1NOX A;  4XOM A;  3BM1 A;  3H4O A;  3EK3 A;  3KWK A;  2I7H A;  3GFA A;  3TNZ A;  3GE6 A;  1V5Z A;  2ISK A;  1KQC A;  3GE5 A;  3TO0 A;  2IFA A;  3GR3 A;  3HJ9 A;  4XOQ A;  3E10 A;  1YKI A;  5KO8 A;  2WQF A;  2WZV A;  1ICR A;  1YWQ A;  3BM2 A;  4QLY A;  4BNB A;  1YLU A;  3EO8 A;  4EO3 A;  3GBH A;  1ICV A;  3X21 A;  3BEM A;  3KOQ A;  2ISL A;  1KQB A;  3GB5 A;  4BN8 A;  3HOI A;  1NEC A;  2YMV A;  1ZCH A;  3G14 A;  2ISJ A;  3X22 A;  3N2S A;  1V5Y A;  2BKJ A;  4BN9 A;  1J6R A;  2WZW A;  3EOF A;  4BN7 A;  1IDT A;  1VFR A;  1OOQ A;  1F5V A;  3M5K A;  4URP A;  3EO7 A;  1DS7 A;  4XOO A;  5HDJ A;  3HZN A;  1YLR A;  5HEI A;  3E39 A;  4G8S A;  1OO6 A;  3GAG A;  3GFD A;  1KQD A;  1VKW A;  4BN6 A;  2FRE A;  5J6C A;  4TTB A;  3QDL A;  1BKJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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