1BMPA

Bone morphogenetic protein-7
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
104
structure length
104
Chain Sequence
QACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transforming growth factor
molecule keywords BONE MORPHOGENETIC PROTEIN-7
publication title Three-dimensional structure of recombinant human osteogenic protein 1: structural paradigm for the transforming growth factor beta superfamily.
pubmed doi rcsb
source organism Homo sapiens
total genus 11
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 1995-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1bmpA00
2C7WA 5BQBA 1JPYA 2VWEA 1KATW 1M4UA 3FUBB 2IFGE 2VPFA 3BDYV 1TFGA 2XV7A 2FJGV 5AEJA 4FAOA 1WAQA 1BJ1V 1SGFB 3P9WA 4ZFFC 2QCWA 2QJBA 4HQUA 5BPUA 3MJGA 4N1DA 5E4GA 1HCFA 4BV4L 3BUKA 3S1BV 3JVFA 1RV6V 2X1XE 4LXSJ 5HHXA 3HH2A 1BTGA 2V5EB 4X1JA 5HK5A 1B8MB 1XWDB 1B8MA 1XWDA 1DZ7A 4UI1A 1ZKZA 3MJKA 4HSAA 4UHYA 1REUA 3V2AA 4QCIC 1MKKA 4MQWB 4MQWA 5HHVA 3IJ2A 1NYUB 2P6AA 1AOCA 2XACA 5HI4A 1B8KA 1AGQA 4AY9B 1ES7A 4UI0A 4AY9A 2TGIA 1HD4A 1LX5A 3EO1C 4GLNE 5FV2V 1MJVA 1QTYR 3S1KV 1BNDB 1BNDA 1WWWV 2H62A 4GLSE 4XPJA 2ARPA 5HI3A 3E07A 4UHZA 1MKGA 4MIDA 1KLAA 4KV5A 1LXIA 1VPFA 1TGKA 1VPPV 1HCNB 2FJHV 1HCNA 1NT3A 2GNNA 5F3HI 5HI5A 4MPLA 1FLTV 1REWA 1S4YB 2GYRA 3BK3A 5HK5E 2GOOA 5JZ7A 3BMPA 3V6BA 4HR9A 5F3BC 2X1WA 1FZVA 2PJYA 2QR0C 3RJRA 2BHKA 5BQCA 2R53A 1CZ8V 4KZNA 2KD3A 3SEKB 1BMPA 5HHDA 2QCQA 1BETA 2R52A 2B0UA 2GH0C 1KLCA 4HQXA 1KTZA 4EAXA 1TGJA 1HRPB 1SG1A 1HRPA 3QB4A 4YCGC 4EC7A 3QTKA 5FV1V 2ARVA 2H64A 1WQ9B 1WQ9A 1QFWB 2GYZA 1QFWA 1FL7B 1FL7A 1B98A 3KFDA 4QAFC 4EDWV 5BQ8B 5BQ8A 4LXRJ 5BQEB 5BQEA 5HHCA 2QJ9A 2VXSA 1PDGA 4UI2B 1WQ8A 3EVSB 4KXZA 1TZIV 2ASKA 4YCIC 1E9JA 4QHUC 4WPBA 4EFVA 3B4VA 4EDXV 1NYSB 1M4UL 4ZBNA 1TZHV 2QJAA 5BQ8D
chains in the Genus database with same CATH superfamily
2C7WA 5BQBA 1JPYA 2VWEA 1KATW 1M4UA 3FUBB 2IFGE 2VPFA 3BDYV 1TFGA 2XV7A 2FJGV 5AEJA 4FAOA 1WAQA 1BJ1V 1SGFB 3P9WA 4ZFFC 2QCWA 2QJBA 4HQUA 5BPUA 3MJGA 4N1DA 5E4GA 1HCFA 4BV4L 3BUKA 3S1BV 3JVFA 1RV6V 2X1XE 4LXSJ 5HHXA 3HH2A 1BTGA 2V5EB 4X1JA 5HK5A 1B8MB 1XWDB 1B8MA 1XWDA 1DZ7A 4UI1A 1ZKZA 3MJKA 4HSAA 4UHYA 1REUA 3V2AA 4QCIC 1MKKA 4MQWB 4MQWA 5HHVA 3IJ2A 1NYUB 2P6AA 1AOCA 2XACA 5HI4A 1B8KA 1AGQA 4AY9B 1ES7A 4UI0A 4AY9A 2TGIA 1HD4A 1LX5A 3EO1C 4GLNE 5FV2V 1MJVA 1QTYR 3S1KV 1BNDB 1BNDA 1WWWV 2H62A 4GLSE 4XPJA 2ARPA 5HI3A 3E07A 4UHZA 1MKGA 4MIDA 1KLAA 4KV5A 1LXIA 1VPFA 1TGKA 1VPPV 1HCNB 2FJHV 1HCNA 1NT3A 2GNNA 5F3HI 5HI5A 4MPLA 1FLTV 1REWA 1S4YB 2GYRA 3BK3A 5HK5E 2GOOA 5JZ7A 3BMPA 3V6BA 4HR9A 5F3BC 2X1WA 1FZVA 2PJYA 2QR0C 3RJRA 2BHKA 5BQCA 2R53A 1CZ8V 4KZNA 2KD3A 3SEKB 1BMPA 5HHDA 2QCQA 1BETA 2R52A 2B0UA 2GH0C 1KLCA 4HQXA 1KTZA 4EAXA 1TGJA 1HRPB 1SG1A 1HRPA 3QB4A 4YCGC 4EC7A 3QTKA 5FV1V 2ARVA 2H64A 1WQ9B 1WQ9A 1QFWB 2GYZA 1QFWA 1FL7B 1FL7A 1B98A 3KFDA 4QAFC 4EDWV 5BQ8B 5BQ8A 4LXRJ 5BQEB 5BQEA 5HHCA 2QJ9A 2VXSA 1PDGA 4UI2B 1WQ8A 3EVSB 4KXZA 1TZIV 2ASKA 4YCIC 1E9JA 4QHUC 4WPBA 4EFVA 3B4VA 4EDXV 1NYSB 1M4UL 4ZBNA 1TZHV 2QJAA 5BQ8D
chains in the Genus database with same CATH topology
2C7WA 5BQBA 1JPYA 2VWEA 1KATW 1M4UA 3FUBB 2IFGE 2VPFA 3BDYV 1TFGA 2XV7A 2FJGV 5AEJA 4FAOA 1WAQA 1BJ1V 1SGFB 3P9WA 4ZFFC 2QCWA 2QJBA 4HQUA 5BPUA 3MJGA 4N1DA 5E4GA 1HCFA 4BV4L 3BUKA 3S1BV 3JVFA 1RV6V 2X1XE 4LXSJ 5HHXA 3HH2A 1BTGA 2V5EB 4X1JA 5HK5A 1B8MB 1XWDB 1B8MA 1XWDA 1DZ7A 4UI1A 1ZKZA 3MJKA 4HSAA 4UHYA 1REUA 3V2AA 4QCIC 1MKKA 4MQWB 4MQWA 5HHVA 3IJ2A 1NYUB 2P6AA 1AOCA 2XACA 5HI4A 1B8KA 1AGQA 4AY9B 1ES7A 4UI0A 4AY9A 2TGIA 1HD4A 1LX5A 3EO1C 4GLNE 5FV2V 1MJVA 1QTYR 3S1KV 1BNDB 1BNDA 1WWWV 2H62A 4GLSE 4XPJA 2ARPA 5HI3A 3E07A 4UHZA 1MKGA 4MIDA 1KLAA 4KV5A 1LXIA 1VPFA 1TGKA 1VPPV 1HCNB 2FJHV 1HCNA 1NT3A 2GNNA 5F3HI 5HI5A 4MPLA 1FLTV 1REWA 1S4YB 2GYRA 3BK3A 5HK5E 2GOOA 5JZ7A 3BMPA 3V6BA 4HR9A 5F3BC 2X1WA 1FZVA 2PJYA 2QR0C 3RJRA 2BHKA 5BQCA 2R53A 1CZ8V 4KZNA 2KD3A 3SEKB 1BMPA 5HHDA 2QCQA 1BETA 2R52A 2B0UA 2GH0C 1KLCA 4HQXA 1KTZA 4EAXA 1TGJA 1HRPB 1SG1A 1HRPA 3QB4A 4YCGC 4EC7A 3QTKA 5FV1V 2ARVA 2H64A 1WQ9B 1WQ9A 1QFWB 2GYZA 1QFWA 1FL7B 1FL7A 1B98A 3KFDA 4QAFC 4EDWV 5BQ8B 5BQ8A 4LXRJ 5BQEB 5BQEA 5HHCA 2QJ9A 2VXSA 1PDGA 4UI2B 1WQ8A 3EVSB 4KXZA 1TZIV 2ASKA 4YCIC 1E9JA 4QHUC 4WPBA 4EFVA 3B4VA 4EDXV 1NYSB 1M4UL 4ZBNA 1TZHV 2QJAA 5BQ8D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C7W A;  5BQB A;  1JPY A;  2VWE A;  1KAT W;  1M4U A;  3FUB B;  2IFG E;  2VPF A;  3BDY V;  1TFG A;  2XV7 A;  2FJG V;  5AEJ A;  4FAO A;  1WAQ A;  1BJ1 V;  1SGF B;  3P9W A;  4ZFF C;  2QCW A;  2QJB A;  4HQU A;  5BPU A;  3MJG A;  4N1D A;  5E4G A;  1HCF A;  4BV4 L;  3BUK A;  3S1B V;  3JVF A;  1RV6 V;  2X1X E;  4LXS J;  5HHX A;  3HH2 A;  1BTG A;  2V5E B;  4X1J A;  5HK5 A;  1B8M B;  1XWD B;  1B8M A;  1XWD A;  1DZ7 A;  4UI1 A;  1ZKZ A;  3MJK A;  4HSA A;  4UHY A;  1REU A;  3V2A A;  4QCI C;  1MKK A;  4MQW B;  4MQW A;  5HHV A;  3IJ2 A;  1NYU B;  2P6A A;  1AOC A;  2XAC A;  5HI4 A;  1B8K A;  1AGQ A;  4AY9 B;  1ES7 A;  4UI0 A;  4AY9 A;  2TGI A;  1HD4 A;  1LX5 A;  3EO1 C;  4GLN E;  5FV2 V;  1MJV A;  1QTY R;  3S1K V;  1BND B;  1BND A;  1WWW V;  2H62 A;  4GLS E;  4XPJ A;  2ARP A;  5HI3 A;  3E07 A;  4UHZ A;  1MKG A;  4MID A;  1KLA A;  4KV5 A;  1LXI A;  1VPF A;  1TGK A;  1VPP V;  1HCN B;  2FJH V;  1HCN A;  1NT3 A;  2GNN A;  5F3H I;  5HI5 A;  4MPL A;  1FLT V;  1REW A;  1S4Y B;  2GYR A;  3BK3 A;  5HK5 E;  2GOO A;  5JZ7 A;  3BMP A;  3V6B A;  4HR9 A;  5F3B C;  2X1W A;  1FZV A;  2PJY A;  2QR0 C;  3RJR A;  2BHK A;  5BQC A;  2R53 A;  1CZ8 V;  4KZN A;  2KD3 A;  3SEK B;  1BMP A;  5HHD A;  2QCQ A;  1BET A;  2R52 A;  2B0U A;  2GH0 C;  1KLC A;  4HQX A;  1KTZ A;  4EAX A;  1TGJ A;  1HRP B;  1SG1 A;  1HRP A;  3QB4 A;  4YCG C;  4EC7 A;  3QTK A;  5FV1 V;  2ARV A;  2H64 A;  1WQ9 B;  1WQ9 A;  1QFW B;  2GYZ A;  1QFW A;  1FL7 B;  1FL7 A;  1B98 A;  3KFD A;  4QAF C;  4EDW V;  5BQ8 B;  5BQ8 A;  4LXR J;  5BQE B;  5BQE A;  5HHC A;  2QJ9 A;  2VXS A;  1PDG A;  4UI2 B;  1WQ8 A;  3EVS B;  4KXZ A;  1TZI V;  2ASK A;  4YCI C;  1E9J A;  4QHU C;  4WPB A;  4EFV A;  3B4V A;  4EDX V;  1NYS B;  1M4U L;  4ZBN A;  1TZH V;  2QJA A;  5BQ8 D; 
#chains in the Genus database with same CATH topology
 2C7W A;  5BQB A;  1JPY A;  2VWE A;  1KAT W;  1M4U A;  3FUB B;  2IFG E;  2VPF A;  3BDY V;  1TFG A;  2XV7 A;  2FJG V;  5AEJ A;  4FAO A;  1WAQ A;  1BJ1 V;  1SGF B;  3P9W A;  4ZFF C;  2QCW A;  2QJB A;  4HQU A;  5BPU A;  3MJG A;  4N1D A;  5E4G A;  1HCF A;  4BV4 L;  3BUK A;  3S1B V;  3JVF A;  1RV6 V;  2X1X E;  4LXS J;  5HHX A;  3HH2 A;  1BTG A;  2V5E B;  4X1J A;  5HK5 A;  1B8M B;  1XWD B;  1B8M A;  1XWD A;  1DZ7 A;  4UI1 A;  1ZKZ A;  3MJK A;  4HSA A;  4UHY A;  1REU A;  3V2A A;  4QCI C;  1MKK A;  4MQW B;  4MQW A;  5HHV A;  3IJ2 A;  1NYU B;  2P6A A;  1AOC A;  2XAC A;  5HI4 A;  1B8K A;  1AGQ A;  4AY9 B;  1ES7 A;  4UI0 A;  4AY9 A;  2TGI A;  1HD4 A;  1LX5 A;  3EO1 C;  4GLN E;  5FV2 V;  1MJV A;  1QTY R;  3S1K V;  1BND B;  1BND A;  1WWW V;  2H62 A;  4GLS E;  4XPJ A;  2ARP A;  5HI3 A;  3E07 A;  4UHZ A;  1MKG A;  4MID A;  1KLA A;  4KV5 A;  1LXI A;  1VPF A;  1TGK A;  1VPP V;  1HCN B;  2FJH V;  1HCN A;  1NT3 A;  2GNN A;  5F3H I;  5HI5 A;  4MPL A;  1FLT V;  1REW A;  1S4Y B;  2GYR A;  3BK3 A;  5HK5 E;  2GOO A;  5JZ7 A;  3BMP A;  3V6B A;  4HR9 A;  5F3B C;  2X1W A;  1FZV A;  2PJY A;  2QR0 C;  3RJR A;  2BHK A;  5BQC A;  2R53 A;  1CZ8 V;  4KZN A;  2KD3 A;  3SEK B;  1BMP A;  5HHD A;  2QCQ A;  1BET A;  2R52 A;  2B0U A;  2GH0 C;  1KLC A;  4HQX A;  1KTZ A;  4EAX A;  1TGJ A;  1HRP B;  1SG1 A;  1HRP A;  3QB4 A;  4YCG C;  4EC7 A;  3QTK A;  5FV1 V;  2ARV A;  2H64 A;  1WQ9 B;  1WQ9 A;  1QFW B;  2GYZ A;  1QFW A;  1FL7 B;  1FL7 A;  1B98 A;  3KFD A;  4QAF C;  4EDW V;  5BQ8 B;  5BQ8 A;  4LXR J;  5BQE B;  5BQE A;  5HHC A;  2QJ9 A;  2VXS A;  1PDG A;  4UI2 B;  1WQ8 A;  3EVS B;  4KXZ A;  1TZI V;  2ASK A;  4YCI C;  1E9J A;  4QHU C;  4WPB A;  4EFV A;  3B4V A;  4EDX V;  1NYS B;  1M4U L;  4ZBN A;  1TZH V;  2QJA A;  5BQ8 D; 
#chains in the Genus database with same CATH homology
 2C7W A;  5BQB A;  1JPY A;  2VWE A;  1KAT W;  1M4U A;  3FUB B;  2IFG E;  2VPF A;  3BDY V;  1TFG A;  2XV7 A;  2FJG V;  5AEJ A;  4FAO A;  1WAQ A;  1BJ1 V;  1SGF B;  3P9W A;  4ZFF C;  2QCW A;  2QJB A;  4HQU A;  5BPU A;  3MJG A;  4N1D A;  5E4G A;  1HCF A;  4BV4 L;  3BUK A;  3S1B V;  3JVF A;  1RV6 V;  2X1X E;  4LXS J;  5HHX A;  3HH2 A;  1BTG A;  2V5E B;  4X1J A;  5HK5 A;  1B8M B;  1XWD B;  1B8M A;  1XWD A;  1DZ7 A;  4UI1 A;  1ZKZ A;  3MJK A;  4HSA A;  4UHY A;  1REU A;  3V2A A;  4QCI C;  1MKK A;  4MQW B;  4MQW A;  5HHV A;  3IJ2 A;  1NYU B;  2P6A A;  1AOC A;  2XAC A;  5HI4 A;  1B8K A;  1AGQ A;  4AY9 B;  1ES7 A;  4UI0 A;  4AY9 A;  2TGI A;  1HD4 A;  1LX5 A;  3EO1 C;  4GLN E;  5FV2 V;  1MJV A;  1QTY R;  3S1K V;  1BND B;  1BND A;  1WWW V;  2H62 A;  4GLS E;  4XPJ A;  2ARP A;  5HI3 A;  3E07 A;  4UHZ A;  1MKG A;  4MID A;  1KLA A;  4KV5 A;  1LXI A;  1VPF A;  1TGK A;  1VPP V;  1HCN B;  2FJH V;  1HCN A;  1NT3 A;  2GNN A;  5F3H I;  5HI5 A;  4MPL A;  1FLT V;  1REW A;  1S4Y B;  2GYR A;  3BK3 A;  5HK5 E;  2GOO A;  5JZ7 A;  3BMP A;  3V6B A;  4HR9 A;  5F3B C;  2X1W A;  1FZV A;  2PJY A;  2QR0 C;  3RJR A;  2BHK A;  5BQC A;  2R53 A;  1CZ8 V;  4KZN A;  2KD3 A;  3SEK B;  1BMP A;  5HHD A;  2QCQ A;  1BET A;  2R52 A;  2B0U A;  2GH0 C;  1KLC A;  4HQX A;  1KTZ A;  4EAX A;  1TGJ A;  1HRP B;  1SG1 A;  1HRP A;  3QB4 A;  4YCG C;  4EC7 A;  3QTK A;  5FV1 V;  2ARV A;  2H64 A;  1WQ9 B;  1WQ9 A;  1QFW B;  2GYZ A;  1QFW A;  1FL7 B;  1FL7 A;  1B98 A;  3KFD A;  4QAF C;  4EDW V;  5BQ8 B;  5BQ8 A;  4LXR J;  5BQE B;  5BQE A;  5HHC A;  2QJ9 A;  2VXS A;  1PDG A;  4UI2 B;  1WQ8 A;  3EVS B;  4KXZ A;  1TZI V;  2ASK A;  4YCI C;  1E9J A;  4QHU C;  4WPB A;  4EFV A;  3B4V A;  4EDX V;  1NYS B;  1M4U L;  4ZBN A;  1TZH V;  2QJA A;  5BQ8 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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