1BNDA

Structure of the brain-derived neurotrophic factor(slash)neurotrophin 3 heterodimer
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
109
structure length
109
Chain Sequence
GQLSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Complex (growth factor/growth factor)
molecule keywords BRAIN DERIVED NEUROTROPHIC FACTOR
publication title Structure of the brain-derived neurotrophic factor/neurotrophin 3 heterodimer.
pubmed doi rcsb
source organism Homo sapiens
total genus 20
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 1994-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00243 NGF Nerve growth factor family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1bndA00
1NT3A 3MJKA 3BDYV 5HI4A 4QAFC 1KLAA 3IJ2A 4AY9A 3S1BV 4GLNE 1REWA 2QR0C 1TGJA 4EC7A 3B4VA 2QJBA 1CZ8V 2QJ9A 4EDXV 1DZ7A 4KXZA 1WWWV 2QCQA 1FZVA 1JPYA 5HHDA 4N1DA 1HCNB 1MKKA 2ARVA 2GYRA 1TGKA 4MPLA 1S4YB 4X1JA 2P6AA 5HHXA 3HH2A 1B8MB 3BMPA 3QB4A 3P9WA 1HCNA 4HQUA 4AY9B 4HQXA 1HD4A 2VWEA 2VXSA 1VPPV 5BPUA 4YCIC 1WQ9A 1LX5A 4WPBA 2KD3A 3SEKB 2ARPA 2GYZA 2H64A 3V2AA 4MQWB 4LXSJ 2VPFA 1ZKZA 1FL7B 4UI0A 1QFWA 1M4UL 2H62A 3MJGA 4ZBNA 2X1XE 3RJRA 4MQWA 1FL7A 2FJHV 1B98A 3EO1C 5E4GA 1AOCA 1E9JA 4LXRJ 1XWDA 4BV4L 5BQ8D 1HRPA 1WQ9B 2GNNA 2FJGV 3V6BA 4KV5A 1VPFA 2ASKA 1WAQA 1TFGA 4HSAA 5BQEA 2QJAA 3FUBB 3QTKA 4EDWV 5F3HI 2IFGE 1QFWB 3BUKA 3BK3A 1QTYR 4MIDA 5AEJA 2R52A 4QCIC 2X1WA 2XV7A 5HI3A 3KFDA 1NYUB 1M4UA 5BQ8A 5FV1V 1BJ1V 1KATW 1XWDB 4UHZA 5FV2V 1HRPB 2R53A 4HR9A 2C7WA 2QCWA 1SGFB 2V5EB 1WQ8A 1AGQA 5HHCA 5BQEB 5F3BC 1BNDB 5HI5A 4EAXA 1KTZA 5BQCA 1MKGA 1SG1A 4XPJA 4YCGC 1REUA 1LXIA 2BHKA 5BQBA 3E07A 1BNDA 5HHVA 5BQ8B 2TGIA 1NYSB 3S1KV 2PJYA 4UHYA 2B0UA 4FAOA 1FLTV 5HK5A 4UI2B 1BMPA 1MJVA 4ZFFC 1TZIV 1BTGA 3EVSB 1BETA 2GH0C 1KLCA 2GOOA 1RV6V 2XACA 4GLSE 4EFVA 4QHUC 3JVFA 1TZHV 1HCFA 1B8KA 5JZ7A 4UI1A 5HK5E 1ES7A 4KZNA 1PDGA 1B8MA
chains in the Genus database with same CATH superfamily
1NT3A 3MJKA 3BDYV 5HI4A 4QAFC 1KLAA 3IJ2A 4AY9A 3S1BV 4GLNE 1REWA 2QR0C 1TGJA 4EC7A 3B4VA 2QJBA 1CZ8V 2QJ9A 4EDXV 1DZ7A 4KXZA 1WWWV 2QCQA 1FZVA 1JPYA 5HHDA 4N1DA 1HCNB 1MKKA 2ARVA 2GYRA 1TGKA 4MPLA 1S4YB 4X1JA 2P6AA 5HHXA 3HH2A 1B8MB 3BMPA 3QB4A 3P9WA 1HCNA 4HQUA 4AY9B 4HQXA 1HD4A 2VWEA 2VXSA 1VPPV 5BPUA 4YCIC 1WQ9A 1LX5A 4WPBA 2KD3A 3SEKB 2ARPA 2GYZA 2H64A 3V2AA 4MQWB 4LXSJ 2VPFA 1ZKZA 1FL7B 4UI0A 1QFWA 1M4UL 2H62A 3MJGA 4ZBNA 2X1XE 3RJRA 4MQWA 1FL7A 2FJHV 1B98A 3EO1C 5E4GA 1AOCA 1E9JA 4LXRJ 1XWDA 4BV4L 5BQ8D 1HRPA 1WQ9B 2GNNA 2FJGV 3V6BA 4KV5A 1VPFA 2ASKA 1WAQA 1TFGA 4HSAA 5BQEA 2QJAA 3FUBB 3QTKA 4EDWV 5F3HI 2IFGE 1QFWB 3BUKA 3BK3A 1QTYR 4MIDA 5AEJA 2R52A 4QCIC 2X1WA 2XV7A 5HI3A 3KFDA 1NYUB 1M4UA 5BQ8A 5FV1V 1BJ1V 1KATW 1XWDB 4UHZA 5FV2V 1HRPB 2R53A 4HR9A 2C7WA 2QCWA 1SGFB 2V5EB 1WQ8A 1AGQA 5HHCA 5BQEB 5F3BC 1BNDB 5HI5A 4EAXA 1KTZA 5BQCA 1MKGA 1SG1A 4XPJA 4YCGC 1REUA 1LXIA 2BHKA 5BQBA 3E07A 1BNDA 5HHVA 5BQ8B 2TGIA 1NYSB 3S1KV 2PJYA 4UHYA 2B0UA 4FAOA 1FLTV 5HK5A 4UI2B 1BMPA 1MJVA 4ZFFC 1TZIV 1BTGA 3EVSB 1BETA 2GH0C 1KLCA 2GOOA 1RV6V 2XACA 4GLSE 4EFVA 4QHUC 3JVFA 1TZHV 1HCFA 1B8KA 5JZ7A 4UI1A 5HK5E 1ES7A 4KZNA 1PDGA 1B8MA
chains in the Genus database with same CATH topology
1NT3A 3MJKA 3BDYV 5HI4A 4QAFC 1KLAA 3IJ2A 4AY9A 3S1BV 4GLNE 1REWA 2QR0C 1TGJA 4EC7A 3B4VA 2QJBA 1CZ8V 2QJ9A 4EDXV 1DZ7A 4KXZA 1WWWV 2QCQA 1FZVA 1JPYA 5HHDA 4N1DA 1HCNB 1MKKA 2ARVA 2GYRA 1TGKA 4MPLA 1S4YB 4X1JA 2P6AA 5HHXA 3HH2A 1B8MB 3BMPA 3QB4A 3P9WA 1HCNA 4HQUA 4AY9B 4HQXA 1HD4A 2VWEA 2VXSA 1VPPV 5BPUA 4YCIC 1WQ9A 1LX5A 4WPBA 2KD3A 3SEKB 2ARPA 2GYZA 2H64A 3V2AA 4MQWB 4LXSJ 2VPFA 1ZKZA 1FL7B 4UI0A 1QFWA 1M4UL 2H62A 3MJGA 4ZBNA 2X1XE 3RJRA 4MQWA 1FL7A 2FJHV 1B98A 3EO1C 5E4GA 1AOCA 1E9JA 4LXRJ 1XWDA 4BV4L 5BQ8D 1HRPA 1WQ9B 2GNNA 2FJGV 3V6BA 4KV5A 1VPFA 2ASKA 1WAQA 1TFGA 4HSAA 5BQEA 2QJAA 3FUBB 3QTKA 4EDWV 5F3HI 2IFGE 1QFWB 3BUKA 3BK3A 1QTYR 4MIDA 5AEJA 2R52A 4QCIC 2X1WA 2XV7A 5HI3A 3KFDA 1NYUB 1M4UA 5BQ8A 5FV1V 1BJ1V 1KATW 1XWDB 4UHZA 5FV2V 1HRPB 2R53A 4HR9A 2C7WA 2QCWA 1SGFB 2V5EB 1WQ8A 1AGQA 5HHCA 5BQEB 5F3BC 1BNDB 5HI5A 4EAXA 1KTZA 5BQCA 1MKGA 1SG1A 4XPJA 4YCGC 1REUA 1LXIA 2BHKA 5BQBA 3E07A 1BNDA 5HHVA 5BQ8B 2TGIA 1NYSB 3S1KV 2PJYA 4UHYA 2B0UA 4FAOA 1FLTV 5HK5A 4UI2B 1BMPA 1MJVA 4ZFFC 1TZIV 1BTGA 3EVSB 1BETA 2GH0C 1KLCA 2GOOA 1RV6V 2XACA 4GLSE 4EFVA 4QHUC 3JVFA 1TZHV 1HCFA 1B8KA 5JZ7A 4UI1A 5HK5E 1ES7A 4KZNA 1PDGA 1B8MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NT3 A;  3MJK A;  3BDY V;  5HI4 A;  4QAF C;  1KLA A;  3IJ2 A;  4AY9 A;  3S1B V;  4GLN E;  1REW A;  2QR0 C;  1TGJ A;  4EC7 A;  3B4V A;  2QJB A;  1CZ8 V;  2QJ9 A;  4EDX V;  1DZ7 A;  4KXZ A;  1WWW V;  2QCQ A;  1FZV A;  1JPY A;  5HHD A;  4N1D A;  1HCN B;  1MKK A;  2ARV A;  2GYR A;  1TGK A;  4MPL A;  1S4Y B;  4X1J A;  2P6A A;  5HHX A;  3HH2 A;  1B8M B;  3BMP A;  3QB4 A;  3P9W A;  1HCN A;  4HQU A;  4AY9 B;  4HQX A;  1HD4 A;  2VWE A;  2VXS A;  1VPP V;  5BPU A;  4YCI C;  1WQ9 A;  1LX5 A;  4WPB A;  2KD3 A;  3SEK B;  2ARP A;  2GYZ A;  2H64 A;  3V2A A;  4MQW B;  4LXS J;  2VPF A;  1ZKZ A;  1FL7 B;  4UI0 A;  1QFW A;  1M4U L;  2H62 A;  3MJG A;  4ZBN A;  2X1X E;  3RJR A;  4MQW A;  1FL7 A;  2FJH V;  1B98 A;  3EO1 C;  5E4G A;  1AOC A;  1E9J A;  4LXR J;  1XWD A;  4BV4 L;  5BQ8 D;  1HRP A;  1WQ9 B;  2GNN A;  2FJG V;  3V6B A;  4KV5 A;  1VPF A;  2ASK A;  1WAQ A;  1TFG A;  4HSA A;  5BQE A;  2QJA A;  3FUB B;  3QTK A;  4EDW V;  5F3H I;  2IFG E;  1QFW B;  3BUK A;  3BK3 A;  1QTY R;  4MID A;  5AEJ A;  2R52 A;  4QCI C;  2X1W A;  2XV7 A;  5HI3 A;  3KFD A;  1NYU B;  1M4U A;  5BQ8 A;  5FV1 V;  1BJ1 V;  1KAT W;  1XWD B;  4UHZ A;  5FV2 V;  1HRP B;  2R53 A;  4HR9 A;  2C7W A;  2QCW A;  1SGF B;  2V5E B;  1WQ8 A;  1AGQ A;  5HHC A;  5BQE B;  5F3B C;  1BND B;  5HI5 A;  4EAX A;  1KTZ A;  5BQC A;  1MKG A;  1SG1 A;  4XPJ A;  4YCG C;  1REU A;  1LXI A;  2BHK A;  5BQB A;  3E07 A;  1BND A;  5HHV A;  5BQ8 B;  2TGI A;  1NYS B;  3S1K V;  2PJY A;  4UHY A;  2B0U A;  4FAO A;  1FLT V;  5HK5 A;  4UI2 B;  1BMP A;  1MJV A;  4ZFF C;  1TZI V;  1BTG A;  3EVS B;  1BET A;  2GH0 C;  1KLC A;  2GOO A;  1RV6 V;  2XAC A;  4GLS E;  4EFV A;  4QHU C;  3JVF A;  1TZH V;  1HCF A;  1B8K A;  5JZ7 A;  4UI1 A;  5HK5 E;  1ES7 A;  4KZN A;  1PDG A;  1B8M A; 
#chains in the Genus database with same CATH topology
 1NT3 A;  3MJK A;  3BDY V;  5HI4 A;  4QAF C;  1KLA A;  3IJ2 A;  4AY9 A;  3S1B V;  4GLN E;  1REW A;  2QR0 C;  1TGJ A;  4EC7 A;  3B4V A;  2QJB A;  1CZ8 V;  2QJ9 A;  4EDX V;  1DZ7 A;  4KXZ A;  1WWW V;  2QCQ A;  1FZV A;  1JPY A;  5HHD A;  4N1D A;  1HCN B;  1MKK A;  2ARV A;  2GYR A;  1TGK A;  4MPL A;  1S4Y B;  4X1J A;  2P6A A;  5HHX A;  3HH2 A;  1B8M B;  3BMP A;  3QB4 A;  3P9W A;  1HCN A;  4HQU A;  4AY9 B;  4HQX A;  1HD4 A;  2VWE A;  2VXS A;  1VPP V;  5BPU A;  4YCI C;  1WQ9 A;  1LX5 A;  4WPB A;  2KD3 A;  3SEK B;  2ARP A;  2GYZ A;  2H64 A;  3V2A A;  4MQW B;  4LXS J;  2VPF A;  1ZKZ A;  1FL7 B;  4UI0 A;  1QFW A;  1M4U L;  2H62 A;  3MJG A;  4ZBN A;  2X1X E;  3RJR A;  4MQW A;  1FL7 A;  2FJH V;  1B98 A;  3EO1 C;  5E4G A;  1AOC A;  1E9J A;  4LXR J;  1XWD A;  4BV4 L;  5BQ8 D;  1HRP A;  1WQ9 B;  2GNN A;  2FJG V;  3V6B A;  4KV5 A;  1VPF A;  2ASK A;  1WAQ A;  1TFG A;  4HSA A;  5BQE A;  2QJA A;  3FUB B;  3QTK A;  4EDW V;  5F3H I;  2IFG E;  1QFW B;  3BUK A;  3BK3 A;  1QTY R;  4MID A;  5AEJ A;  2R52 A;  4QCI C;  2X1W A;  2XV7 A;  5HI3 A;  3KFD A;  1NYU B;  1M4U A;  5BQ8 A;  5FV1 V;  1BJ1 V;  1KAT W;  1XWD B;  4UHZ A;  5FV2 V;  1HRP B;  2R53 A;  4HR9 A;  2C7W A;  2QCW A;  1SGF B;  2V5E B;  1WQ8 A;  1AGQ A;  5HHC A;  5BQE B;  5F3B C;  1BND B;  5HI5 A;  4EAX A;  1KTZ A;  5BQC A;  1MKG A;  1SG1 A;  4XPJ A;  4YCG C;  1REU A;  1LXI A;  2BHK A;  5BQB A;  3E07 A;  1BND A;  5HHV A;  5BQ8 B;  2TGI A;  1NYS B;  3S1K V;  2PJY A;  4UHY A;  2B0U A;  4FAO A;  1FLT V;  5HK5 A;  4UI2 B;  1BMP A;  1MJV A;  4ZFF C;  1TZI V;  1BTG A;  3EVS B;  1BET A;  2GH0 C;  1KLC A;  2GOO A;  1RV6 V;  2XAC A;  4GLS E;  4EFV A;  4QHU C;  3JVF A;  1TZH V;  1HCF A;  1B8K A;  5JZ7 A;  4UI1 A;  5HK5 E;  1ES7 A;  4KZN A;  1PDG A;  1B8M A; 
#chains in the Genus database with same CATH homology
 1NT3 A;  3MJK A;  3BDY V;  5HI4 A;  4QAF C;  1KLA A;  3IJ2 A;  4AY9 A;  3S1B V;  4GLN E;  1REW A;  2QR0 C;  1TGJ A;  4EC7 A;  3B4V A;  2QJB A;  1CZ8 V;  2QJ9 A;  4EDX V;  1DZ7 A;  4KXZ A;  1WWW V;  2QCQ A;  1FZV A;  1JPY A;  5HHD A;  4N1D A;  1HCN B;  1MKK A;  2ARV A;  2GYR A;  1TGK A;  4MPL A;  1S4Y B;  4X1J A;  2P6A A;  5HHX A;  3HH2 A;  1B8M B;  3BMP A;  3QB4 A;  3P9W A;  1HCN A;  4HQU A;  4AY9 B;  4HQX A;  1HD4 A;  2VWE A;  2VXS A;  1VPP V;  5BPU A;  4YCI C;  1WQ9 A;  1LX5 A;  4WPB A;  2KD3 A;  3SEK B;  2ARP A;  2GYZ A;  2H64 A;  3V2A A;  4MQW B;  4LXS J;  2VPF A;  1ZKZ A;  1FL7 B;  4UI0 A;  1QFW A;  1M4U L;  2H62 A;  3MJG A;  4ZBN A;  2X1X E;  3RJR A;  4MQW A;  1FL7 A;  2FJH V;  1B98 A;  3EO1 C;  5E4G A;  1AOC A;  1E9J A;  4LXR J;  1XWD A;  4BV4 L;  5BQ8 D;  1HRP A;  1WQ9 B;  2GNN A;  2FJG V;  3V6B A;  4KV5 A;  1VPF A;  2ASK A;  1WAQ A;  1TFG A;  4HSA A;  5BQE A;  2QJA A;  3FUB B;  3QTK A;  4EDW V;  5F3H I;  2IFG E;  1QFW B;  3BUK A;  3BK3 A;  1QTY R;  4MID A;  5AEJ A;  2R52 A;  4QCI C;  2X1W A;  2XV7 A;  5HI3 A;  3KFD A;  1NYU B;  1M4U A;  5BQ8 A;  5FV1 V;  1BJ1 V;  1KAT W;  1XWD B;  4UHZ A;  5FV2 V;  1HRP B;  2R53 A;  4HR9 A;  2C7W A;  2QCW A;  1SGF B;  2V5E B;  1WQ8 A;  1AGQ A;  5HHC A;  5BQE B;  5F3B C;  1BND B;  5HI5 A;  4EAX A;  1KTZ A;  5BQC A;  1MKG A;  1SG1 A;  4XPJ A;  4YCG C;  1REU A;  1LXI A;  2BHK A;  5BQB A;  3E07 A;  1BND A;  5HHV A;  5BQ8 B;  2TGI A;  1NYS B;  3S1K V;  2PJY A;  4UHY A;  2B0U A;  4FAO A;  1FLT V;  5HK5 A;  4UI2 B;  1BMP A;  1MJV A;  4ZFF C;  1TZI V;  1BTG A;  3EVS B;  1BET A;  2GH0 C;  1KLC A;  2GOO A;  1RV6 V;  2XAC A;  4GLS E;  4EFV A;  4QHU C;  3JVF A;  1TZH V;  1HCF A;  1B8K A;  5JZ7 A;  4UI1 A;  5HK5 E;  1ES7 A;  4KZN A;  1PDG A;  1B8M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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