1BP7A

Group i mobile intron endonuclease i-crei complexed with homing site dna
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA (5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*C
publication title DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 42
structure length 152
sequence length 152
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1998-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1bp7A00
3C0WA 5AKNA 4LQ0A 5E5OA 1JVAA 5A78A 2XE0A 1B24A 1DFAA 4LOXA 4AADA 4Z20A 2VBNB 3MX9A 5E5SA 4AAGA 4UN9A 2CW7A 4UT0A 3KO2A 5A0WA 4AQXA 5AK9A 2VBLB 1M5XA 5A0MA 4YITA 3OORA 5A72A 5AKFA 5A74A 1N3EA 3EH8A 2QOJZ 3UVFA 1LWTA 3HYJA 4UNBA 3MXAA 3OOLA 3E54A 5E67A 3QQYA 1UM2A 1U0CA 4D6OA 4YHXA 1P8KZ 2XE0B 4EFJA 4UN9G 2VBJA 3MXBA 1DQ3A 3MISA 3C0XA 3MIPA 1LWSA 2FLDA 2VS7A 2VBOA 1VDEA 5A0MB 3MXBB 4AABA 3FD2A 1T9JA 2AB5A 1R7MA 4UNCA 4UN7A 2I3PA 2DCHX 1T9IA 2VS8A 1MOWA 4Z1XA 4D6NA 4AQUA 4UN8A 1EF0A 5A77A 4UNAA 1G9ZA 2VBNA 5AKMA 3HYIA 2VBJB 4YISA 2O7MA 2VBLA 4AAEA 2I3QA 2VBOB 4AAFA 2EX5A 1U0DA 4UN7G 1BP7A 4Z1ZA 2CW8A 1G9YA 1N3FA 4UN8G 1AF5A 3R7PA 5E63A
chains in the Genus database with same CATH superfamily
3C0WA 2F4LA 5AKNA 4LQ0A 5E5OA 1JVAA 5A78A 2XE0A 1B24A 1DFAA 4LOXA 4AADA 4Z20A 2VBNB 3MX9A 5E5SA 4AAGA 4UN9A 2CW7A 4UT0A 3KO2A 5A0WA 4AQXA 5AK9A 2VBLB 1M5XA 5A0MA 4YITA 3OORA 5A72A 5AKFA 5A74A 1N3EA 3EH8A 4KZSA 2QOJZ 3UVFA 1LWTA 3HYJA 4UNBA 3MXAA 3OOLA 3E54A 5E67A 3QQYA 1UM2A 1U0CA 4D6OA 4YHXA 1P8KZ 2XE0B 4EFJA 4UN9G 2VBJA 3MXBA 1DQ3A 3MISA 3C0XA 3MIPA 1LWSA 2FLDA 2VS7A 2VBOA 1VDEA 5A0MB 3MXBB 4AABA 3FD2A 1T9JA 2AB5A 1R7MA 4UNCA 4UN7A 2I3PA 2DCHX 1T9IA 2VS8A 1MOWA 4Z1XA 4D6NA 4AQUA 4UN8A 1EF0A 5A77A 4UNAA 1G9ZA 2VBNA 5AKMA 3HYIA 2VBJB 4YISA 2O7MA 2VBLA 4AAEA 2I3QA 2VBOB 4AAFA 2EX5A 1U0DA 4UN7G 1BP7A 4Z1ZA 2CW8A 1G9YA 1N3FA 4UN8G 1AF5A 3R7PA 5E63A
chains in the Genus database with same CATH topology
3C0WA 5AKNA 4LQ0A 5E5OA 1JVAA 5A78A 2XE0A 1B24A 1DFAA 4LOXA 4AADA 4Z20A 2VBNB 3MX9A 5E5SA 4AAGA 4UN9A 2CW7A 4UT0A 3KO2A 5A0WA 4AQXA 5AK9A 2VBLB 1M5XA 5A0MA 4YITA 3OORA 5A72A 5AKFA 5A74A 1N3EA 3EH8A 2QOJZ 3UVFA 1LWTA 3HYJA 4UNBA 3MXAA 3OOLA 3E54A 5E67A 3QQYA 1UM2A 1U0CA 4D6OA 4YHXA 1P8KZ 2XE0B 4EFJA 4UN9G 2VBJA 3MXBA 1DQ3A 3MISA 3C0XA 3MIPA 1LWSA 2FLDA 2VS7A 2VBOA 1VDEA 5A0MB 3MXBB 4AABA 3FD2A 1T9JA 2AB5A 1R7MA 4UNCA 4UN7A 2I3PA 2DCHX 1T9IA 2VS8A 1MOWA 4Z1XA 4D6NA 4AQUA 4UN8A 1EF0A 5A77A 4UNAA 1G9ZA 2VBNA 5AKMA 3HYIA 2VBJB 4YISA 2O7MA 2VBLA 4AAEA 2I3QA 2VBOB 4AAFA 2EX5A 1U0DA 4UN7G 1BP7A 4Z1ZA 2CW8A 1G9YA 1N3FA 4UN8G 1AF5A 3R7PA 5E63A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C0W A;  5AKN A;  4LQ0 A;  5E5O A;  1JVA A;  5A78 A;  2XE0 A;  1B24 A;  1DFA A;  4LOX A;  4AAD A;  4Z20 A;  2VBN B;  3MX9 A;  5E5S A;  4AAG A;  4UN9 A;  2CW7 A;  4UT0 A;  3KO2 A;  5A0W A;  4AQX A;  5AK9 A;  2VBL B;  1M5X A;  5A0M A;  4YIT A;  3OOR A;  5A72 A;  5AKF A;  5A74 A;  1N3E A;  3EH8 A;  2QOJ Z;  3UVF A;  1LWT A;  3HYJ A;  4UNB A;  3MXA A;  3OOL A;  3E54 A;  5E67 A;  3QQY A;  1UM2 A;  1U0C A;  4D6O A;  4YHX A;  1P8K Z;  2XE0 B;  4EFJ A;  4UN9 G;  2VBJ A;  3MXB A;  1DQ3 A;  3MIS A;  3C0X A;  3MIP A;  1LWS A;  2FLD A;  2VS7 A;  2VBO A;  1VDE A;  5A0M B;  3MXB B;  4AAB A;  3FD2 A;  1T9J A;  2AB5 A;  1R7M A;  4UNC A;  4UN7 A;  2I3P A;  2DCH X;  1T9I A;  2VS8 A;  1MOW A;  4Z1X A;  4D6N A;  4AQU A;  4UN8 A;  1EF0 A;  5A77 A;  4UNA A;  1G9Z A;  2VBN A;  5AKM A;  3HYI A;  2VBJ B;  4YIS A;  2O7M A;  2VBL A;  4AAE A;  2I3Q A;  2VBO B;  4AAF A;  2EX5 A;  1U0D A;  4UN7 G;  1BP7 A;  4Z1Z A;  2CW8 A;  1G9Y A;  1N3F A;  4UN8 G;  1AF5 A;  3R7P A;  5E63 A; 
#chains in the Genus database with same CATH topology
 3C0W A;  2F4L A;  5AKN A;  4LQ0 A;  5E5O A;  1JVA A;  5A78 A;  2XE0 A;  1B24 A;  1DFA A;  4LOX A;  4AAD A;  4Z20 A;  2VBN B;  3MX9 A;  5E5S A;  4AAG A;  4UN9 A;  2CW7 A;  4UT0 A;  3KO2 A;  5A0W A;  4AQX A;  5AK9 A;  2VBL B;  1M5X A;  5A0M A;  4YIT A;  3OOR A;  5A72 A;  5AKF A;  5A74 A;  1N3E A;  3EH8 A;  4KZS A;  2QOJ Z;  3UVF A;  1LWT A;  3HYJ A;  4UNB A;  3MXA A;  3OOL A;  3E54 A;  5E67 A;  3QQY A;  1UM2 A;  1U0C A;  4D6O A;  4YHX A;  1P8K Z;  2XE0 B;  4EFJ A;  4UN9 G;  2VBJ A;  3MXB A;  1DQ3 A;  3MIS A;  3C0X A;  3MIP A;  1LWS A;  2FLD A;  2VS7 A;  2VBO A;  1VDE A;  5A0M B;  3MXB B;  4AAB A;  3FD2 A;  1T9J A;  2AB5 A;  1R7M A;  4UNC A;  4UN7 A;  2I3P A;  2DCH X;  1T9I A;  2VS8 A;  1MOW A;  4Z1X A;  4D6N A;  4AQU A;  4UN8 A;  1EF0 A;  5A77 A;  4UNA A;  1G9Z A;  2VBN A;  5AKM A;  3HYI A;  2VBJ B;  4YIS A;  2O7M A;  2VBL A;  4AAE A;  2I3Q A;  2VBO B;  4AAF A;  2EX5 A;  1U0D A;  4UN7 G;  1BP7 A;  4Z1Z A;  2CW8 A;  1G9Y A;  1N3F A;  4UN8 G;  1AF5 A;  3R7P A;  5E63 A; 
#chains in the Genus database with same CATH homology
 3C0W A;  5AKN A;  4LQ0 A;  5E5O A;  1JVA A;  5A78 A;  2XE0 A;  1B24 A;  1DFA A;  4LOX A;  4AAD A;  4Z20 A;  2VBN B;  3MX9 A;  5E5S A;  4AAG A;  4UN9 A;  2CW7 A;  4UT0 A;  3KO2 A;  5A0W A;  4AQX A;  5AK9 A;  2VBL B;  1M5X A;  5A0M A;  4YIT A;  3OOR A;  5A72 A;  5AKF A;  5A74 A;  1N3E A;  3EH8 A;  2QOJ Z;  3UVF A;  1LWT A;  3HYJ A;  4UNB A;  3MXA A;  3OOL A;  3E54 A;  5E67 A;  3QQY A;  1UM2 A;  1U0C A;  4D6O A;  4YHX A;  1P8K Z;  2XE0 B;  4EFJ A;  4UN9 G;  2VBJ A;  3MXB A;  1DQ3 A;  3MIS A;  3C0X A;  3MIP A;  1LWS A;  2FLD A;  2VS7 A;  2VBO A;  1VDE A;  5A0M B;  3MXB B;  4AAB A;  3FD2 A;  1T9J A;  2AB5 A;  1R7M A;  4UNC A;  4UN7 A;  2I3P A;  2DCH X;  1T9I A;  2VS8 A;  1MOW A;  4Z1X A;  4D6N A;  4AQU A;  4UN8 A;  1EF0 A;  5A77 A;  4UNA A;  1G9Z A;  2VBN A;  5AKM A;  3HYI A;  2VBJ B;  4YIS A;  2O7M A;  2VBL A;  4AAE A;  2I3Q A;  2VBO B;  4AAF A;  2EX5 A;  1U0D A;  4UN7 G;  1BP7 A;  4Z1Z A;  2CW8 A;  1G9Y A;  1N3F A;  4UN8 G;  1AF5 A;  3R7P A;  5E63 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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