1BT3A

Catechol oxidase from ipomoea batatas (sweet potatoes) in the native cu(ii)-cu(ii) state
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
341
structure length
336
Chain Sequence
APIQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLPAVTTMKVRPAAHTMDKDAIAKFAKAVELMKALPADDPRNFYQQALVHCAYCNGGYDQVNFPDQEIQVHNSWLFFPFHRWYLYFYERILGKLIGDPSFGLPFWNWDNPGGMVLPDFLNDSTSSLYDSNRNQSHLPPVVVDLGYNGADTDVTDQQRITDNLALMYKQMVTNAGTAELFLGKAYRAGDAPSPGAGSIETSPHIPIHRWVGDPRNTNNEDMGNFYSAGRDIAFYCHHSNVDRMWTIWQQLARDYTDSDWLNATFLFYDENGQAVKVRIGDSLDNQKMGYKYAKTPLPWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PROTEIN (CATECHOL OXIDASE)
publication title Crystal structure of a plant catechol oxidase containing a dicopper center.
pubmed doi rcsb
total genus 112
structure length 336
sequence length 341
ec nomenclature ec 1.10.3.1: Catechol oxidase.
pdb deposition date 1998-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00264 Tyrosinase Common central domain of tyrosinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1280.10 Mainly Alpha Orthogonal Bundle di-copper center containing domain from catechol oxidase Di-copper center containing domain from catechol oxidase 1bt3A00
4L37B 3AWZA 2ZWDA 4J3RA 4YZWA 3NM8A 3AWSA 3QJOA 3W6WA 2ZMZA 5I3AA 4P6TA 4J6TA 1LLAA 5I3BA 4J6VA 3NQ0A 4D87A 2AHKA 3AWTA 3AWXA 1LNLA 3AX0A 1BUGA 3WKYA 5CE9A 1BT3A 3W6QA 4Z0YA 3NQ5A 1WX5A 3GWJA 3NTMA 4OUAA 3WJMA 3HHSA 1WX2A 4P6RA 4J6UA 1LL1A 1BT2A 2Y9XA 3NQ1A 1NOLA 2ZWGA 4J3QA 4HD4A 1WX4A 1OXYA 2P3XA 4Z0ZA 3AWWA 4P6SA 3HHSB 1JS8A 5I38A 2ZMXA 3AWUA 4Z10A 2ZWFA 4HD6A 4J3PA 2ZWEA 1WXCA 2Y9WA 1BT1A 3AWVA 4L37A 4OUAB 3WJMB 1HC1A 3AWYA 2AHLA 1HCYA 4HD7A 3NPYA 2ZMYA
chains in the Genus database with same CATH superfamily
4L37B 3AWZA 2ZWDA 4J3RA 4YZWA 3NM8A 3AWSA 3QJOA 3W6WA 2ZMZA 5I3AA 4P6TA 4J6TA 1LLAA 5I3BA 4J6VA 3NQ0A 4D87A 2AHKA 3AWTA 3AWXA 1LNLA 3AX0A 1BUGA 3WKYA 5CE9A 1BT3A 3W6QA 4Z0YA 3NQ5A 1WX5A 3GWJA 3NTMA 4OUAA 3WJMA 3HHSA 1WX2A 4P6RA 4J6UA 1LL1A 1BT2A 2Y9XA 3NQ1A 1NOLA 2ZWGA 4J3QA 4HD4A 1WX4A 1OXYA 2P3XA 4Z0ZA 3AWWA 4P6SA 3HHSB 1JS8A 5I38A 2ZMXA 3AWUA 4Z10A 2ZWFA 4HD6A 4J3PA 2ZWEA 1WXCA 2Y9WA 1BT1A 3AWVA 4L37A 4OUAB 3WJMB 1HC1A 3AWYA 2AHLA 1HCYA 4HD7A 3NPYA 2ZMYA
chains in the Genus database with same CATH topology
4L37B 3AWZA 2ZWDA 4J3RA 4YZWA 3NM8A 3AWSA 3QJOA 3W6WA 2ZMZA 5I3AA 4P6TA 4J6TA 1LLAA 5I3BA 4J6VA 3NQ0A 4D87A 2AHKA 3AWTA 3AWXA 1LNLA 3AX0A 1BUGA 3WKYA 5CE9A 1BT3A 3W6QA 4Z0YA 3NQ5A 1WX5A 3GWJA 3NTMA 4OUAA 3WJMA 3HHSA 1WX2A 4P6RA 4J6UA 1LL1A 1BT2A 2Y9XA 3NQ1A 1NOLA 2ZWGA 4J3QA 4HD4A 1WX4A 1OXYA 2P3XA 4Z0ZA 3AWWA 4P6SA 3HHSB 1JS8A 5I38A 2ZMXA 3AWUA 4Z10A 2ZWFA 4HD6A 4J3PA 2ZWEA 1WXCA 2Y9WA 1BT1A 3AWVA 4L37A 4OUAB 3WJMB 1HC1A 3AWYA 2AHLA 1HCYA 4HD7A 3NPYA 2ZMYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L37 B;  3AWZ A;  2ZWD A;  4J3R A;  4YZW A;  3NM8 A;  3AWS A;  3QJO A;  3W6W A;  2ZMZ A;  5I3A A;  4P6T A;  4J6T A;  1LLA A;  5I3B A;  4J6V A;  3NQ0 A;  4D87 A;  2AHK A;  3AWT A;  3AWX A;  1LNL A;  3AX0 A;  1BUG A;  3WKY A;  5CE9 A;  1BT3 A;  3W6Q A;  4Z0Y A;  3NQ5 A;  1WX5 A;  3GWJ A;  3NTM A;  4OUA A;  3WJM A;  3HHS A;  1WX2 A;  4P6R A;  4J6U A;  1LL1 A;  1BT2 A;  2Y9X A;  3NQ1 A;  1NOL A;  2ZWG A;  4J3Q A;  4HD4 A;  1WX4 A;  1OXY A;  2P3X A;  4Z0Z A;  3AWW A;  4P6S A;  3HHS B;  1JS8 A;  5I38 A;  2ZMX A;  3AWU A;  4Z10 A;  2ZWF A;  4HD6 A;  4J3P A;  2ZWE A;  1WXC A;  2Y9W A;  1BT1 A;  3AWV A;  4L37 A;  4OUA B;  3WJM B;  1HC1 A;  3AWY A;  2AHL A;  1HCY A;  4HD7 A;  3NPY A;  2ZMY A; 
#chains in the Genus database with same CATH topology
 4L37 B;  3AWZ A;  2ZWD A;  4J3R A;  4YZW A;  3NM8 A;  3AWS A;  3QJO A;  3W6W A;  2ZMZ A;  5I3A A;  4P6T A;  4J6T A;  1LLA A;  5I3B A;  4J6V A;  3NQ0 A;  4D87 A;  2AHK A;  3AWT A;  3AWX A;  1LNL A;  3AX0 A;  1BUG A;  3WKY A;  5CE9 A;  1BT3 A;  3W6Q A;  4Z0Y A;  3NQ5 A;  1WX5 A;  3GWJ A;  3NTM A;  4OUA A;  3WJM A;  3HHS A;  1WX2 A;  4P6R A;  4J6U A;  1LL1 A;  1BT2 A;  2Y9X A;  3NQ1 A;  1NOL A;  2ZWG A;  4J3Q A;  4HD4 A;  1WX4 A;  1OXY A;  2P3X A;  4Z0Z A;  3AWW A;  4P6S A;  3HHS B;  1JS8 A;  5I38 A;  2ZMX A;  3AWU A;  4Z10 A;  2ZWF A;  4HD6 A;  4J3P A;  2ZWE A;  1WXC A;  2Y9W A;  1BT1 A;  3AWV A;  4L37 A;  4OUA B;  3WJM B;  1HC1 A;  3AWY A;  2AHL A;  1HCY A;  4HD7 A;  3NPY A;  2ZMY A; 
#chains in the Genus database with same CATH homology
 4L37 B;  3AWZ A;  2ZWD A;  4J3R A;  4YZW A;  3NM8 A;  3AWS A;  3QJO A;  3W6W A;  2ZMZ A;  5I3A A;  4P6T A;  4J6T A;  1LLA A;  5I3B A;  4J6V A;  3NQ0 A;  4D87 A;  2AHK A;  3AWT A;  3AWX A;  1LNL A;  3AX0 A;  1BUG A;  3WKY A;  5CE9 A;  1BT3 A;  3W6Q A;  4Z0Y A;  3NQ5 A;  1WX5 A;  3GWJ A;  3NTM A;  4OUA A;  3WJM A;  3HHS A;  1WX2 A;  4P6R A;  4J6U A;  1LL1 A;  1BT2 A;  2Y9X A;  3NQ1 A;  1NOL A;  2ZWG A;  4J3Q A;  4HD4 A;  1WX4 A;  1OXY A;  2P3X A;  4Z0Z A;  3AWW A;  4P6S A;  3HHS B;  1JS8 A;  5I38 A;  2ZMX A;  3AWU A;  4Z10 A;  2ZWF A;  4HD6 A;  4J3P A;  2ZWE A;  1WXC A;  2Y9W A;  1BT1 A;  3AWV A;  4L37 A;  4OUA B;  3WJM B;  1HC1 A;  3AWY A;  2AHL A;  1HCY A;  4HD7 A;  3NPY A;  2ZMY A; 
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