1BWOA

The crystal structure of wheat non-specific transfer protein complexed with two molecules of phospholipid at 2.1 a resolution
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
90
structure length
90
Chain Sequence
IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transfer protein
molecule keywords NONSPECIFIC LIPID-TRANSFER PROTEIN
publication title The crystal structure of a wheat nonspecific lipid transfer protein (ns-LTP1) complexed with two molecules of phospholipid at 2.1 A resolution.
pubmed doi rcsb
total genus 30
structure length 90
sequence length 90
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-09-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 1bwoA00
1N89A 1CZ2A 2N81A 1MZMA 1HYPA 1UVAA 1L6HA 1T12A 1BFAA 3GSHA 2MALA 1BIPA 1MZLA 1MIDA 2ALGA 4CVWC 1TMQB 1FK3A 1FK6A 1RZLA 1B1UA 1FK5A 5DOMA 1AFHA 1PNBB 1UVCA 2LVFA 1UVBA 1LIPA 1FK7A 1SIYA 1SM7A 1W2QA 2DS2B 1TUKA 1FK1A 1JTBA 1BV2A 1GH1A 1FK0A 1BE2A 1HSSA 2B5SA 1BEAA 1S6DA 1FK2A 1BWOA 1PSYA 2N2ZA 2RKNA 4XUWA 1FK4A
chains in the Genus database with same CATH superfamily
1N89A 1CZ2A 2N81A 1MZMA 1MIWA 1HYPA 1UVAA 1L6HA 1T12A 1BFAA 3GSHA 2MALA 1BIPA 1MZLA 1MIDA 3HMJG 1MIVA 2ALGA 4CVWC 1TMQB 1FK3A 1FK6A 1RZLA 2UV8G 1B1UA 1FK5A 5DOMA 1AFHA 1PNBB 1UVCA 2LVFA 2VKZG 1UVBA 1LIPA 1FK7A 1SIYA 1SM7A 1W2QA 2DS2B 1TUKA 1FK1A 1JTBA 1BV2A 1GH1A 1FK0A 1BE2A 1HSSA 2B5SA 3H3AA 1MIYA 1BEAA 1S6DA 1FK2A 1BWOA 1PSYA 2N2ZA 2RKNA 3H37A 1FK4A 4XUWA
chains in the Genus database with same CATH topology
1N89A 1CZ2A 2N81A 1MZMA 1HYPA 1UVAA 1L6HA 1T12A 1BFAA 3GSHA 2MALA 1BIPA 1MZLA 1MIDA 2ALGA 4CVWC 1TMQB 1FK3A 1FK6A 1RZLA 1B1UA 1FK5A 5DOMA 1AFHA 1PNBB 1UVCA 2LVFA 1UVBA 1LIPA 1FK7A 1SIYA 1SM7A 1W2QA 2DS2B 1TUKA 1FK1A 1JTBA 1BV2A 1GH1A 1FK0A 1BE2A 1HSSA 2B5SA 1BEAA 1S6DA 1FK2A 1BWOA 1PSYA 2N2ZA 2RKNA 4XUWA 1FK4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N89 A;  1CZ2 A;  2N81 A;  1MZM A;  1HYP A;  1UVA A;  1L6H A;  1T12 A;  1BFA A;  3GSH A;  2MAL A;  1BIP A;  1MZL A;  1MID A;  2ALG A;  4CVW C;  1TMQ B;  1FK3 A;  1FK6 A;  1RZL A;  1B1U A;  1FK5 A;  5DOM A;  1AFH A;  1PNB B;  1UVC A;  2LVF A;  1UVB A;  1LIP A;  1FK7 A;  1SIY A;  1SM7 A;  1W2Q A;  2DS2 B;  1TUK A;  1FK1 A;  1JTB A;  1BV2 A;  1GH1 A;  1FK0 A;  1BE2 A;  1HSS A;  2B5S A;  1BEA A;  1S6D A;  1FK2 A;  1BWO A;  1PSY A;  2N2Z A;  2RKN A;  4XUW A;  1FK4 A; 
#chains in the Genus database with same CATH topology
 1N89 A;  1CZ2 A;  2N81 A;  1MZM A;  1MIW A;  1HYP A;  1UVA A;  1L6H A;  1T12 A;  1BFA A;  3GSH A;  2MAL A;  1BIP A;  1MZL A;  1MID A;  3HMJ G;  1MIV A;  2ALG A;  4CVW C;  1TMQ B;  1FK3 A;  1FK6 A;  1RZL A;  2UV8 G;  1B1U A;  1FK5 A;  5DOM A;  1AFH A;  1PNB B;  1UVC A;  2LVF A;  2VKZ G;  1UVB A;  1LIP A;  1FK7 A;  1SIY A;  1SM7 A;  1W2Q A;  2DS2 B;  1TUK A;  1FK1 A;  1JTB A;  1BV2 A;  1GH1 A;  1FK0 A;  1BE2 A;  1HSS A;  2B5S A;  3H3A A;  1MIY A;  1BEA A;  1S6D A;  1FK2 A;  1BWO A;  1PSY A;  2N2Z A;  2RKN A;  3H37 A;  1FK4 A;  4XUW A; 
#chains in the Genus database with same CATH homology
 1N89 A;  1CZ2 A;  2N81 A;  1MZM A;  1HYP A;  1UVA A;  1L6H A;  1T12 A;  1BFA A;  3GSH A;  2MAL A;  1BIP A;  1MZL A;  1MID A;  2ALG A;  4CVW C;  1TMQ B;  1FK3 A;  1FK6 A;  1RZL A;  1B1U A;  1FK5 A;  5DOM A;  1AFH A;  1PNB B;  1UVC A;  2LVF A;  1UVB A;  1LIP A;  1FK7 A;  1SIY A;  1SM7 A;  1W2Q A;  2DS2 B;  1TUK A;  1FK1 A;  1JTB A;  1BV2 A;  1GH1 A;  1FK0 A;  1BE2 A;  1HSS A;  2B5S A;  1BEA A;  1S6D A;  1FK2 A;  1BWO A;  1PSY A;  2N2Z A;  2RKN A;  4XUW A;  1FK4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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