1BXEA

Ribosomal protein l22 from thermus thermophilus
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
110
structure length
110
Chain Sequence
MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDMLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVILGEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords PROTEIN (RIBOSOMAL PROTEIN L22)
publication title The crystal structure of ribosomal protein L22 from Thermus thermophilus: insights into the mechanism of erythromycin resistance.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 26
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 1998-10-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 1bxeA00
3CD6R 4IO9P 1VQNR 5JVGP 1VQ6R 1S72R 3CPWQ 1VQKR 3CCER 1Q7YS 3G4SR 1M1KS 3CCMR 1YJ9R 5DM7P 4WFAP 1VQ5R 1NJIS 5HL7P 2QEXR 3PIPP 4WFBP 1YI2R 1K73S 2OTLR 1VQOR 1QVFQ 3CMAR 2QA4R 2ZJPP 1VQMR 1Q82S 1N8RS 5DM6P 3PIOP 3CC2R 3CCVR 5GAHT 3J7YT 3I55R 3I56R 1QVGQ 1YIJR 1YJNR 4IOAP 3CCJR 1M90S 1JJ2Q 3CCUR 5JVHP 1YJWR 3CCSR 4V19W 1Q81S 4WCEP 1I4JA 5GAET 1BXEA 2ZJRP 1VQ9R 2ZJQP 3OW2Q 1K9MS 3CMER 1YITR 3CCQR 1VQ4R 1W2BQ 3CXCQ 1KC8S 1KQSQ 1VQ8R 4WF9P 1VQLR 1Q86S 1KD1S 4IOCP 4UY8S 3CCLR 4U67P 5GAGT 3G71R 3J7ZS 5H1SU 3CC4R 1YHQR 3DLLP 3G6ER 4WFNP 3CCRR 1VQPR 3CF5P 5GADT 3CC7R 2OTJR 1VQ7R 5MLCU 1K8AS
chains in the Genus database with same CATH superfamily
2WASB 2D0OA 2WDSA 3NFDA 3CD6R 4IO9P 1VQNR 5JVGP 3HYKA 1VQ6R 2JBZA 1S72R 3CPWQ 1VQKR 3CCER 3HQJA 1Q7YS 3G4SR 1M1KS 3CCMR 1YJ9R 5DM7P 4WFAP 1VQ5R 1NJIS 2BYDA 5HL7P 2QEXR 1NBWA 3PIPP 4WFBP 1YI2R 1K73S 2OTLR 1VQOR 1QVFQ 3CMAR 2WATA 3GWMA 2QA4R 2ZJPP 1VQMR 1QR0A 1Q82S 1F7TA 1N8RS 5DM6P 3PIOP 3CC2R 3CCVR 2WDOA 5GAHT 3J7YT 3I55R 3NE9A 3I56R 1QVGQ 1YIJR 1YJNR 4MRTA 4IOAP 3CCJR 1M90S 1JJ2Q 3CCUR 5JVHP 1YJWR 3CCSR 4V19W 1FTEA 1Q81S 4WCEP 3NE3B 1I4JA 5GAET 2CG5A 1BXEA 3NE1A 2ZJRP 2WDYA 1VQ9R 3QMNA 2WASA 2ZJQP 3OW2Q 1K9MS 3CMER 1YITR 4JM7A 3CCQR 1VQ4R 2QG8A 1W2BQ 1FTHA 3CXCQ 1KC8S 1KQSQ 3H7QA 2BDDA 5CXDA 2C43A 1VQ8R 4WF9P 1VQLR 1Q86S 1KD1S 1F80A 4IOCP 4UY8S 1FTFA 3CCLR 4U67P 5GAGT 3G71R 3J7ZS 5H1SU 3CC4R 1YHQR 2D0PA 3DLLP 3G6ER 4WFNP 4DXEA 5CMOA 3CCRR 4HC6A 1F7LA 1VQPR 2JCAA 3CF5P 5GADT 3CC7R 2OTJR 1VQ7R 5MLCU 1K8AS
chains in the Genus database with same CATH topology
3CD6R 4IO9P 1VQNR 5JVGP 1VQ6R 1S72R 3CPWQ 1VQKR 3CCER 1Q7YS 3G4SR 1M1KS 3CCMR 1YJ9R 5DM7P 4WFAP 1VQ5R 1NJIS 5HL7P 2QEXR 3PIPP 4WFBP 1YI2R 1K73S 2OTLR 1VQOR 1QVFQ 3CMAR 2QA4R 2ZJPP 1VQMR 1Q82S 1N8RS 5DM6P 3PIOP 3CC2R 3CCVR 5GAHT 3J7YT 3I55R 3I56R 1QVGQ 1YIJR 1YJNR 4IOAP 3CCJR 1M90S 1JJ2Q 3CCUR 5JVHP 1YJWR 3CCSR 4V19W 1Q81S 4WCEP 1I4JA 5GAET 1BXEA 2ZJRP 1VQ9R 2ZJQP 3OW2Q 1K9MS 3CMER 1YITR 3CCQR 1VQ4R 1W2BQ 3CXCQ 1KC8S 1KQSQ 1VQ8R 4WF9P 1VQLR 1Q86S 1KD1S 4IOCP 4UY8S 3CCLR 4U67P 5GAGT 3G71R 3J7ZS 5H1SU 3CC4R 1YHQR 3DLLP 3G6ER 4WFNP 3CCRR 1VQPR 3CF5P 5GADT 3CC7R 2OTJR 1VQ7R 5MLCU 1K8AS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CD6 R;  4IO9 P;  1VQN R;  5JVG P;  1VQ6 R;  1S72 R;  3CPW Q;  1VQK R;  3CCE R;  1Q7Y S;  3G4S R;  1M1K S;  3CCM R;  1YJ9 R;  5DM7 P;  4WFA P;  1VQ5 R;  1NJI S;  5HL7 P;  2QEX R;  3PIP P;  4WFB P;  1YI2 R;  1K73 S;  2OTL R;  1VQO R;  1QVF Q;  3CMA R;  2QA4 R;  2ZJP P;  1VQM R;  1Q82 S;  1N8R S;  5DM6 P;  3PIO P;  3CC2 R;  3CCV R;  5GAH T;  3J7Y T;  3I55 R;  3I56 R;  1QVG Q;  1YIJ R;  1YJN R;  4IOA P;  3CCJ R;  1M90 S;  1JJ2 Q;  3CCU R;  5JVH P;  1YJW R;  3CCS R;  4V19 W;  1Q81 S;  4WCE P;  1I4J A;  5GAE T;  1BXE A;  2ZJR P;  1VQ9 R;  2ZJQ P;  3OW2 Q;  1K9M S;  3CME R;  1YIT R;  3CCQ R;  1VQ4 R;  1W2B Q;  3CXC Q;  1KC8 S;  1KQS Q;  1VQ8 R;  4WF9 P;  1VQL R;  1Q86 S;  1KD1 S;  4IOC P;  4UY8 S;  3CCL R;  4U67 P;  5GAG T;  3G71 R;  3J7Z S;  5H1S U;  3CC4 R;  1YHQ R;  3DLL P;  3G6E R;  4WFN P;  3CCR R;  1VQP R;  3CF5 P;  5GAD T;  3CC7 R;  2OTJ R;  1VQ7 R;  5MLC U;  1K8A S; 
#chains in the Genus database with same CATH topology
 2WAS B;  2D0O A;  2WDS A;  3NFD A;  3CD6 R;  4IO9 P;  1VQN R;  5JVG P;  3HYK A;  1VQ6 R;  2JBZ A;  1S72 R;  3CPW Q;  1VQK R;  3CCE R;  3HQJ A;  1Q7Y S;  3G4S R;  1M1K S;  3CCM R;  1YJ9 R;  5DM7 P;  4WFA P;  1VQ5 R;  1NJI S;  2BYD A;  5HL7 P;  2QEX R;  1NBW A;  3PIP P;  4WFB P;  1YI2 R;  1K73 S;  2OTL R;  1VQO R;  1QVF Q;  3CMA R;  2WAT A;  3GWM A;  2QA4 R;  2ZJP P;  1VQM R;  1QR0 A;  1Q82 S;  1F7T A;  1N8R S;  5DM6 P;  3PIO P;  3CC2 R;  3CCV R;  2WDO A;  5GAH T;  3J7Y T;  3I55 R;  3NE9 A;  3I56 R;  1QVG Q;  1YIJ R;  1YJN R;  4MRT A;  4IOA P;  3CCJ R;  1M90 S;  1JJ2 Q;  3CCU R;  5JVH P;  1YJW R;  3CCS R;  4V19 W;  1FTE A;  1Q81 S;  4WCE P;  3NE3 B;  1I4J A;  5GAE T;  2CG5 A;  1BXE A;  3NE1 A;  2ZJR P;  2WDY A;  1VQ9 R;  3QMN A;  2WAS A;  2ZJQ P;  3OW2 Q;  1K9M S;  3CME R;  1YIT R;  4JM7 A;  3CCQ R;  1VQ4 R;  2QG8 A;  1W2B Q;  1FTH A;  3CXC Q;  1KC8 S;  1KQS Q;  3H7Q A;  2BDD A;  5CXD A;  2C43 A;  1VQ8 R;  4WF9 P;  1VQL R;  1Q86 S;  1KD1 S;  1F80 A;  4IOC P;  4UY8 S;  1FTF A;  3CCL R;  4U67 P;  5GAG T;  3G71 R;  3J7Z S;  5H1S U;  3CC4 R;  1YHQ R;  2D0P A;  3DLL P;  3G6E R;  4WFN P;  4DXE A;  5CMO A;  3CCR R;  4HC6 A;  1F7L A;  1VQP R;  2JCA A;  3CF5 P;  5GAD T;  3CC7 R;  2OTJ R;  1VQ7 R;  5MLC U;  1K8A S; 
#chains in the Genus database with same CATH homology
 3CD6 R;  4IO9 P;  1VQN R;  5JVG P;  1VQ6 R;  1S72 R;  3CPW Q;  1VQK R;  3CCE R;  1Q7Y S;  3G4S R;  1M1K S;  3CCM R;  1YJ9 R;  5DM7 P;  4WFA P;  1VQ5 R;  1NJI S;  5HL7 P;  2QEX R;  3PIP P;  4WFB P;  1YI2 R;  1K73 S;  2OTL R;  1VQO R;  1QVF Q;  3CMA R;  2QA4 R;  2ZJP P;  1VQM R;  1Q82 S;  1N8R S;  5DM6 P;  3PIO P;  3CC2 R;  3CCV R;  5GAH T;  3J7Y T;  3I55 R;  3I56 R;  1QVG Q;  1YIJ R;  1YJN R;  4IOA P;  3CCJ R;  1M90 S;  1JJ2 Q;  3CCU R;  5JVH P;  1YJW R;  3CCS R;  4V19 W;  1Q81 S;  4WCE P;  1I4J A;  5GAE T;  1BXE A;  2ZJR P;  1VQ9 R;  2ZJQ P;  3OW2 Q;  1K9M S;  3CME R;  1YIT R;  3CCQ R;  1VQ4 R;  1W2B Q;  3CXC Q;  1KC8 S;  1KQS Q;  1VQ8 R;  4WF9 P;  1VQL R;  1Q86 S;  1KD1 S;  4IOC P;  4UY8 S;  3CCL R;  4U67 P;  5GAG T;  3G71 R;  3J7Z S;  5H1S U;  3CC4 R;  1YHQ R;  3DLL P;  3G6E R;  4WFN P;  3CCR R;  1VQP R;  3CF5 P;  5GAD T;  3CC7 R;  2OTJ R;  1VQ7 R;  5MLC U;  1K8A S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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