1BXWA

Outer membrane protein a (ompa) transmembrane domain
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
172
structure length
172
Chain Sequence
MAPKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the outer membrane protein A transmembrane domain.
pubmed doi rcsb
molecule keywords PROTEIN (OUTER MEMBRANE PROTEIN A)
source organism Escherichia coli bl21(de3)
molecule tags Membrane protein
total genus 35
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 1998-10-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1bxwA00
3C5OA 2MHLA 2M06A 2X27X 2K0LA 2ERVA 2GE4A 4PUXA 3G7GA 3QRAA 1ORMA 3GP6A 1P4TA 1Q9FA 2F1TA 1MM4A 1G90A 2LHFA 1QJ9A 2N2MA 2MNHA 3QRCA 2F1VA 1MM5A 2N2LA 2M07A 1BXWA 1QJPA 1Q9GA 1THQA 1QJ8A 2JMMA 4RLCA
chains in the Genus database with same CATH superfamily
4N75A 3AA7A 1GFQA 3LK41 3NSGA 5G26A 4F4BA 3K19A 1HXXA 3LK42 4C4VB 2J4UP 4D5UA 1ZHXA 3LK2B 4C69X 2ERVA 3HOLA 3G7GA 1PHOA 1PRNA 3GP6A 3PQUA 2JQYA 4GF4A 1T1LA 3FYXA 3WI4A 4AYNA 5D5DA 2O4VA 4D65A 5GTHO 2KC0A 2Y0HA 2W81C 4FZLA 5H2FO 3HWBA 4AZLA 4B61A 2QTKA 5DL5A 4FT6A 2R4OA 3EMNX 3QRCA 2KZ7A 4O49A 3SY9A 4AUIA 4QQ1A 2KZ7B 2XE3A 3VY8X 1YS5A 3PGUA 1HXTA 1Q9GA 2WVPA 2ZFGA 4FRXA 2R4LA 3AA0B 4FMSA 4O4UA 3UPGA 3SYSA 3KVDD 3JCUO 3SYBA 2OMFA 4JCHA 1OSMA 2IWVA 4KR4A 4IL6O 5B66O 1GFMA 3DA3A 2M06A 4K3BA 4RJWA 5DL6A 3VE1A 3AA6A 3WU2O 3PQSA 5FVNA 2KDYA 2PORA 3AA7B 4RJXA 5DL8A 2XG6A 4N58A 4U9CA 3AA6B 5E79O 5EE2A 5IYUA 1P4TA 3VZUX 3T0SA 2YPVA 4LSEA 4JFBA 1E54A 3DWNA 4K3CA 4PJ0O 1BH3A 1QJ9A 4RL9A 1ZHWA 2R88A 4G75A 7PRNA 3PRNA 2XTRA 5AFUK 3BS0A 3DWOX 2Y0LA 4D64A 5G38A 4FRTA 3AAAA 4E1SA 3UAQA 2K4TA 4AKRA 5AFUL 5GV0A 3WI5A 3LK3A 1ZHZA 3V8UA 4BUMX 5G39A 4O3WA 3T24A 5KAFO 2XMXA 1H6S1 3A0HO 3O0EA 4XNLA 4FOZA 4LSIA 4GCSA 5B5EO 2KXPA 1MPFA 3NJTA 5ADXK 4N59A 3KZIO 2PRNA 4Z3TA 2FGQX 2K0LA 5G3AA 2R4NA 4UB6O 5TISO 4AFKA 2GE4A 5ADXL 3BRYA 2WJQA 4PUXA 2XE5A 4FSPA 4O4XA 1ORMA 6PRNA 4RLBA 2AXTO 1Q9FA 4AYMC 3AAEA 2WJRA 3TZGA 3BRZA 4FSOA 3VY9X 4O3YA 2IWWA 3RBHA 2LHFA 4AKMA 1T16A 2N2MA 2Y2XA 1S5LO 2W80C 2Y0KA 3AA1A 4FUVA 2YNKA 5KAIO 4FZMA 1MM5A 3A2SX 3HW9A 3JTYA 1BXWA 4KR8A 1BT9A 1OPFA 3SZVA 4AYDC 2J1NA 3A0BO 3VZWX 3AAAB 4C4VA 3T20A 4RLCA 3LK2A 4O3ZA 2R8AA 4PR7A 4AKRB 1GFOA 3VZTX 3C5OA 2MHLA 3LK3B 4AYEC 4C00A 3HOEA 1GFNA 3SY7A 2X27X 4CTDA 2X9KA 2ZLDA 4KRAA 2R89A 1HXUA 1ZHYA 2KXPB 2Y7SA 3PF1A 2XE2A 3QRAA 5PRNA 8PRNA 4GCQA 3UU2A 2XE1A 2LFUA 4O3XB 2F1TA 4FQEA 5GTIO 4GHBA 1MM4A 2ODJA 1G90A 2F1CX 3POUA 3PGRA 4XNKA 5JDPA 3AAEB 4LSHA 2R4PA 1IZNA 2MNHA 3POXA 3POQA 4G76A 5DL7A 4N74A 2XTQA 3PORA 4FESA 2F1VA 4UB8O 1IZNB 3AA0A 3DZMA 2N2LA 4E1TA 2M07A 3AA1B 3VE2A 1QJPA 3DA4A 1GFPA 1THQA 4LSFA 5T5FA 3SZDA 1QJ8A 1ZHTA 3PGSA 2JMMA 2FGRA 4FZNA 4AYID 4GCPA
chains in the Genus database with same CATH topology
3AA7A 1GFQA 3LK41 3NSGA 5G26A 4F4BA 3K19A 1HXXA 3LK42 2J4UP 4D5UA 1ZHXA 3LK2B 4C69X 2ERVA 3HOLA 3G7GA 1PHOA 1PRNA 3GP6A 3PQUA 4GF4A 3FYXA 3WI4A 4AYNA 5D5DA 2O4VA 4D65A 2KC0A 2Y0HA 2W81C 4FZLA 3HWBA 4AZLA 4B61A 2QTKA 5DL5A 4FT6A 3EMNX 3QRCA 2KZ7A 4O49A 3SY9A 4AUIA 4QQ1A 2XE3A 2KZ7B 3VY8X 1YS5A 1HXTA 1Q9GA 2ZFGA 4FRXA 3AA0B 4FMSA 4O4UA 3UPGA 3SYSA 3KVDD 3SYBA 2OMFA 4JCHA 1OSMA 4KR4A 1GFMA 3DA3A 2M06A 4RJWA 5DL6A 3VE1A 3AA6A 3PQSA 5FVNA 2KDYA 2PORA 3AA7B 4RJXA 5DL8A 2XG6A 4N58A 4U9CA 3AA6B 5EE2A 5IYUA 1P4TA 3VZUX 3T0SA 2YPVA 4LSEA 4JFBA 1E54A 1BH3A 1QJ9A 4RL9A 1ZHWA 4G75A 7PRNA 3PRNA 2XTRA 5AFUK 2Y0LA 4D64A 4FRTA 3AAAA 4E1SA 3UAQA 2K4TA 4AKRA 5AFUL 5GV0A 3WI5A 3LK3A 1ZHZA 3V8UA 4BUMX 4O3WA 3T24A 2XMXA 1H6S1 3O0EA 4XNLA 4FOZA 4LSIA 4GCSA 5ADXK 2KXPA 1MPFA 4N59A 2PRNA 4Z3TA 2FGQX 2K0LA 4AFKA 2GE4A 5ADXL 4PUXA 2XE5A 4FSPA 4O4XA 1ORMA 6PRNA 4RLBA 1Q9FA 4AYMC 3AAEA 3TZGA 4FSOA 3VY9X 4O3YA 3RBHA 2LHFA 4AKMA 2Y2XA 2N2MA 3AA1A 2W80C 4FUVA 2Y0KA 2YNKA 4FZMA 1MM5A 3A2SX 3HW9A 3JTYA 1BXWA 4KR8A 1BT9A 1OPFA 3SZVA 4AYDC 2J1NA 3VZWX 3T20A 3AAAB 4RLCA 3LK2A 4O3ZA 4AKRB 1GFOA 3VZTX 3C5OA 2MHLA 3LK3B 4AYEC 3HOEA 1GFNA 3SY7A 2X27X 2ZLDA 4KRAA 1HXUA 1ZHYA 2KXPB 2Y7SA 2XE2A 3QRAA 5PRNA 8PRNA 4GCQA 3UU2A 2XE1A 2LFUA 4O3XB 2F1TA 4GHBA 1MM4A 2ODJA 1G90A 4XNKA 3POUA 5JDPA 3AAEB 4LSHA 3POXA 1IZNA 2MNHA 3POQA 4G76A 5DL7A 2XTQA 3PORA 4FESA 2F1VA 1IZNB 3AA0A 4E1TA 2N2LA 2M07A 3AA1B 3VE2A 1QJPA 3DA4A 1GFPA 1THQA 4LSFA 5T5FA 3SZDA 1QJ8A 1ZHTA 2JMMA 2FGRA 4FZNA 4AYID 4GCPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C5O A;  2MHL A;  2M06 A;  2X27 X;  2K0L A;  2ERV A;  2GE4 A;  4PUX A;  3G7G A;  3QRA A;  1ORM A;  3GP6 A;  1P4T A;  1Q9F A;  2F1T A;  1MM4 A;  1G90 A;  2LHF A;  1QJ9 A;  2N2M A;  2MNH A;  3QRC A;  2F1V A;  1MM5 A;  2N2L A;  2M07 A;  1BXW A;  1QJP A;  1Q9G A;  1THQ A;  1QJ8 A;  2JMM A;  4RLC A; 
#chains in the Genus database with same CATH topology
 4N75 A;  3AA7 A;  1GFQ A;  3LK4 1;  3NSG A;  5G26 A;  4F4B A;  3K19 A;  1HXX A;  3LK4 2;  4C4V B;  2J4U P;  4D5U A;  1ZHX A;  3LK2 B;  4C69 X;  2ERV A;  3HOL A;  3G7G A;  1PHO A;  1PRN A;  3GP6 A;  3PQU A;  2JQY A;  4GF4 A;  1T1L A;  3FYX A;  3WI4 A;  4AYN A;  5D5D A;  2O4V A;  4D65 A;  5GTH O;  2KC0 A;  2Y0H A;  2W81 C;  4FZL A;  5H2F O;  3HWB A;  4AZL A;  4B61 A;  2QTK A;  5DL5 A;  4FT6 A;  2R4O A;  3EMN X;  3QRC A;  2KZ7 A;  4O49 A;  3SY9 A;  4AUI A;  4QQ1 A;  2KZ7 B;  2XE3 A;  3VY8 X;  1YS5 A;  3PGU A;  1HXT A;  1Q9G A;  2WVP A;  2ZFG A;  4FRX A;  2R4L A;  3AA0 B;  4FMS A;  4O4U A;  3UPG A;  3SYS A;  3KVD D;  3JCU O;  3SYB A;  2OMF A;  4JCH A;  1OSM A;  2IWV A;  4KR4 A;  4IL6 O;  5B66 O;  1GFM A;  3DA3 A;  2M06 A;  4K3B A;  4RJW A;  5DL6 A;  3VE1 A;  3AA6 A;  3WU2 O;  3PQS A;  5FVN A;  2KDY A;  2POR A;  3AA7 B;  4RJX A;  5DL8 A;  2XG6 A;  4N58 A;  4U9C A;  3AA6 B;  5E79 O;  5EE2 A;  5IYU A;  1P4T A;  3VZU X;  3T0S A;  2YPV A;  4LSE A;  4JFB A;  1E54 A;  3DWN A;  4K3C A;  4PJ0 O;  1BH3 A;  1QJ9 A;  4RL9 A;  1ZHW A;  2R88 A;  4G75 A;  7PRN A;  3PRN A;  2XTR A;  5AFU K;  3BS0 A;  3DWO X;  2Y0L A;  4D64 A;  5G38 A;  4FRT A;  3AAA A;  4E1S A;  3UAQ A;  2K4T A;  4AKR A;  5AFU L;  5GV0 A;  3WI5 A;  3LK3 A;  1ZHZ A;  3V8U A;  4BUM X;  5G39 A;  4O3W A;  3T24 A;  5KAF O;  2XMX A;  1H6S 1;  3A0H O;  3O0E A;  4XNL A;  4FOZ A;  4LSI A;  4GCS A;  5B5E O;  2KXP A;  1MPF A;  3NJT A;  5ADX K;  4N59 A;  3KZI O;  2PRN A;  4Z3T A;  2FGQ X;  2K0L A;  5G3A A;  2R4N A;  4UB6 O;  5TIS O;  4AFK A;  2GE4 A;  5ADX L;  3BRY A;  2WJQ A;  4PUX A;  2XE5 A;  4FSP A;  4O4X A;  1ORM A;  6PRN A;  4RLB A;  2AXT O;  1Q9F A;  4AYM C;  3AAE A;  2WJR A;  3TZG A;  3BRZ A;  4FSO A;  3VY9 X;  4O3Y A;  2IWW A;  3RBH A;  2LHF A;  4AKM A;  1T16 A;  2N2M A;  2Y2X A;  1S5L O;  2W80 C;  2Y0K A;  3AA1 A;  4FUV A;  2YNK A;  5KAI O;  4FZM A;  1MM5 A;  3A2S X;  3HW9 A;  3JTY A;  1BXW A;  4KR8 A;  1BT9 A;  1OPF A;  3SZV A;  4AYD C;  2J1N A;  3A0B O;  3VZW X;  3AAA B;  4C4V A;  3T20 A;  4RLC A;  3LK2 A;  4O3Z A;  2R8A A;  4PR7 A;  4AKR B;  1GFO A;  3VZT X;  3C5O A;  2MHL A;  3LK3 B;  4AYE C;  4C00 A;  3HOE A;  1GFN A;  3SY7 A;  2X27 X;  4CTD A;  2X9K A;  2ZLD A;  4KRA A;  2R89 A;  1HXU A;  1ZHY A;  2KXP B;  2Y7S A;  3PF1 A;  2XE2 A;  3QRA A;  5PRN A;  8PRN A;  4GCQ A;  3UU2 A;  2XE1 A;  2LFU A;  4O3X B;  2F1T A;  4FQE A;  5GTI O;  4GHB A;  1MM4 A;  2ODJ A;  1G90 A;  2F1C X;  3POU A;  3PGR A;  4XNK A;  5JDP A;  3AAE B;  4LSH A;  2R4P A;  1IZN A;  2MNH A;  3POX A;  3POQ A;  4G76 A;  5DL7 A;  4N74 A;  2XTQ A;  3POR A;  4FES A;  2F1V A;  4UB8 O;  1IZN B;  3AA0 A;  3DZM A;  2N2L A;  4E1T A;  2M07 A;  3AA1 B;  3VE2 A;  1QJP A;  3DA4 A;  1GFP A;  1THQ A;  4LSF A;  5T5F A;  3SZD A;  1QJ8 A;  1ZHT A;  3PGS A;  2JMM A;  2FGR A;  4FZN A;  4AYI D;  4GCP A; 
#chains in the Genus database with same CATH homology
 3AA7 A;  1GFQ A;  3LK4 1;  3NSG A;  5G26 A;  4F4B A;  3K19 A;  1HXX A;  3LK4 2;  2J4U P;  4D5U A;  1ZHX A;  3LK2 B;  4C69 X;  2ERV A;  3HOL A;  3G7G A;  1PHO A;  1PRN A;  3GP6 A;  3PQU A;  4GF4 A;  3FYX A;  3WI4 A;  4AYN A;  5D5D A;  2O4V A;  4D65 A;  2KC0 A;  2Y0H A;  2W81 C;  4FZL A;  3HWB A;  4AZL A;  4B61 A;  2QTK A;  5DL5 A;  4FT6 A;  3EMN X;  3QRC A;  2KZ7 A;  4O49 A;  3SY9 A;  4AUI A;  4QQ1 A;  2XE3 A;  2KZ7 B;  3VY8 X;  1YS5 A;  1HXT A;  1Q9G A;  2ZFG A;  4FRX A;  3AA0 B;  4FMS A;  4O4U A;  3UPG A;  3SYS A;  3KVD D;  3SYB A;  2OMF A;  4JCH A;  1OSM A;  4KR4 A;  1GFM A;  3DA3 A;  2M06 A;  4RJW A;  5DL6 A;  3VE1 A;  3AA6 A;  3PQS A;  5FVN A;  2KDY A;  2POR A;  3AA7 B;  4RJX A;  5DL8 A;  2XG6 A;  4N58 A;  4U9C A;  3AA6 B;  5EE2 A;  5IYU A;  1P4T A;  3VZU X;  3T0S A;  2YPV A;  4LSE A;  4JFB A;  1E54 A;  1BH3 A;  1QJ9 A;  4RL9 A;  1ZHW A;  4G75 A;  7PRN A;  3PRN A;  2XTR A;  5AFU K;  2Y0L A;  4D64 A;  4FRT A;  3AAA A;  4E1S A;  3UAQ A;  2K4T A;  4AKR A;  5AFU L;  5GV0 A;  3WI5 A;  3LK3 A;  1ZHZ A;  3V8U A;  4BUM X;  4O3W A;  3T24 A;  2XMX A;  1H6S 1;  3O0E A;  4XNL A;  4FOZ A;  4LSI A;  4GCS A;  5ADX K;  2KXP A;  1MPF A;  4N59 A;  2PRN A;  4Z3T A;  2FGQ X;  2K0L A;  4AFK A;  2GE4 A;  5ADX L;  4PUX A;  2XE5 A;  4FSP A;  4O4X A;  1ORM A;  6PRN A;  4RLB A;  1Q9F A;  4AYM C;  3AAE A;  3TZG A;  4FSO A;  3VY9 X;  4O3Y A;  3RBH A;  2LHF A;  4AKM A;  2Y2X A;  2N2M A;  3AA1 A;  2W80 C;  4FUV A;  2Y0K A;  2YNK A;  4FZM A;  1MM5 A;  3A2S X;  3HW9 A;  3JTY A;  1BXW A;  4KR8 A;  1BT9 A;  1OPF A;  3SZV A;  4AYD C;  2J1N A;  3VZW X;  3T20 A;  3AAA B;  4RLC A;  3LK2 A;  4O3Z A;  4AKR B;  1GFO A;  3VZT X;  3C5O A;  2MHL A;  3LK3 B;  4AYE C;  3HOE A;  1GFN A;  3SY7 A;  2X27 X;  2ZLD A;  4KRA A;  1HXU A;  1ZHY A;  2KXP B;  2Y7S A;  2XE2 A;  3QRA A;  5PRN A;  8PRN A;  4GCQ A;  3UU2 A;  2XE1 A;  2LFU A;  4O3X B;  2F1T A;  4GHB A;  1MM4 A;  2ODJ A;  1G90 A;  4XNK A;  3POU A;  5JDP A;  3AAE B;  4LSH A;  3POX A;  1IZN A;  2MNH A;  3POQ A;  4G76 A;  5DL7 A;  2XTQ A;  3POR A;  4FES A;  2F1V A;  1IZN B;  3AA0 A;  4E1T A;  2N2L A;  2M07 A;  3AA1 B;  3VE2 A;  1QJP A;  3DA4 A;  1GFP A;  1THQ A;  4LSF A;  5T5F A;  3SZD A;  1QJ8 A;  1ZHT A;  2JMM A;  2FGR A;  4FZN A;  4AYI D;  4GCP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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