1BXWA

Outer membrane protein a (ompa) transmembrane domain
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
172
structure length
172
Chain Sequence
MAPKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Escherichia coli bl21(de3)
publication title Structure of the outer membrane protein A transmembrane domain.
pubmed doi rcsb
molecule keywords PROTEIN (OUTER MEMBRANE PROTEIN A)
total genus 35
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 1998-10-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1bxwA00
2X27X 1BXWA 1QJPA 1MM5A 2MNHA 2K0LA 2F1VA 2N2MA 2M07A 1G90A 4RLCA 3QRCA 2LHFA 3GP6A 4PUXA 3QRAA 1P4TA 2GE4A 3G7GA 2JMMA 2M06A 1QJ8A 2ERVA 1THQA 2MHLA 1QJ9A 2N2LA 1MM4A 1Q9GA 1ORMA 1Q9FA 3C5OA 2F1TA
chains in the Genus database with same CATH superfamily
4K3CA 2PORA 2WVPA 3LK42 5T5FA 5B66O 4LSHA 8PRNA 2MNHA 3BS0A 3VZWX 4K3BA 4U9CA 5G26A 2QTKA 2N2MA 2XE1A 3VY8X 4FRTA 2K4TA 4IL6O 3GP6A 3PF1A 4N59A 5G39A 2XE2A 3QRAA 5G3AA 4AKRA 1ZHZA 3AA1B 3G7GA 5GTHO 4GCQA 3DWOX 2R4PA 4AKRB 3SYSA 2YPVA 5IYUA 2KDYA 2M06A 4XNLA 5D5DA 1IZNA 4LSEA 4C4VA 1QJ8A 2XTQA 4KR8A 5TISO 1THQA 1IZNB 2J1NA 2R4NA 3EMNX 1E54A 4C4VB 1QJ9A 3AA7A 5AFUK 3KVDD 4E1SA 2N2LA 2XE3A 3K19A 1HXTA 2R88A 3AA7B 3DA4A 3AA6A 4AKMA 4FSOA 3C5OA 4FRXA 3VY9X 4FSPA 3HW9A 3A0BO 4O49A 4PR7A 1GFOA 5DL7A 3T24A 1MM5A 2PRNA 4O4UA 2OMFA 2WJQA 3SZVA 3VE2A 4RL9A 2M07A 4N74A 5JDPA 1HXXA 3UAQA 4AYNA 2XMXA 3QRCA 1T16A 4F4BA 5DL6A 3RBHA 1ZHWA 4AYDC 2W80C 5ADXL 4G75A 4O3WA 5GTIO 1P4TA 1S5LO 4GHBA 3WI5A 5B5EO 2YNKA 5GV0A 5FVNA 2W81C 1GFQA 4AUIA 7PRNA 2Y0LA 3O0EA 2X9KA 2ERVA 4FUVA 3UU2A 4KRAA 1GFNA 4FQEA 2KZ7A 3LK2A 4GF4A 4O3YA 1BT9A 3WI4A 4AZLA 2Y2XA 3PQSA 2KZ7B 3LK2B 1MM4A 3BRZA 4QQ1A 3UPGA 2R4OA 4CTDA 2F1TA 4B61A 3SZDA 3KZIO 3AA6B 3HWBA 4FOZA 4AYEC 3T20A 3JCUO 2LFUA 3PQUA 2F1CX 4BUMX 5G38A 2JQYA 2R4LA 3BRYA 2KC0A 4RJWA 2K0LA 2F1VA 3TZGA 2FGRA 3AA0A 2AXTO 2Y0KA 2ZLDA 3DWNA 2XE5A 4FESA 2Y7SA 3AA0B 4JCHA 4RLCA 1PRNA 4RLBA 4JFBA 3SYBA 1BH3A 2O4VA 3DZMA 4N58A 5DL8A 3WU2O 2XG6A 2XTRA 2GE4A 5KAIO 4C69X 1ZHYA 5EE2A 5ADXK 4FZMA 4GCPA 4XNKA 4O3XB 5PRNA 1GFPA 3SY9A 4E1TA 4GCSA 4KR4A 2IWVA 4RJXA 3V8UA 2MHLA 3LK41 4FZLA 2R8AA 4PJ0O 1H6S1 3NJTA 2ZFGA 5DL5A 2FGQX 2ODJA 1YS5A 4UB8O 2IWWA 1ORMA 5E79O 1GFMA 3A2SX 5KAFO 3PORA 3VZUX 1ZHTA 4UB6O 1PHOA 3AAAA 3PRNA 4O4XA 2X27X 2WJRA 3POXA 1BXWA 1QJPA 3AAAB 4AFKA 4Z3TA 3POQA 3JTYA 3NSGA 4FT6A 4FZNA 3HOLA 1G90A 4AYID 3AA1A 2LHFA 1MPFA 4FMSA 1HXUA 4LSFA 3T0SA 3LK3A 1OSMA 4O3ZA 4PUXA 4G76A 3FYXA 3A0HO 4N75A 3LK3B 3VZTX 3PGUA 3HOEA 2JMMA 2Y0HA 4LSIA 3SY7A 4D64A 5AFUL 6PRNA 4AYMC 2R89A 4D5UA 5H2FO 3VE1A 4D65A 1Q9GA 1Q9FA 1OPFA 1ZHXA 2KXPA 3PGRA 3POUA 4C00A 3PGSA 2KXPB 3AAEA 3DA3A 2J4UP 3AAEB 1T1LA
chains in the Genus database with same CATH topology
2PORA 3LK42 5T5FA 4LSHA 8PRNA 2MNHA 3VZWX 4U9CA 5G26A 2QTKA 2N2MA 2XE1A 3VY8X 4FRTA 2K4TA 3GP6A 4N59A 2XE2A 3QRAA 4AKRA 1ZHZA 3AA1B 3G7GA 4GCQA 4AKRB 3SYSA 2YPVA 5IYUA 2KDYA 2M06A 4XNLA 5D5DA 1IZNA 4LSEA 1QJ8A 2XTQA 4KR8A 1THQA 1IZNB 2J1NA 3EMNX 5AFUK 1E54A 1QJ9A 3AA7A 3KVDD 4E1SA 2N2LA 2XE3A 3K19A 1HXTA 3AA7B 3DA4A 4AKMA 3AA6A 4FSOA 3C5OA 4FRXA 3VY9X 4FSPA 3HW9A 4O49A 1GFOA 5DL7A 1MM5A 2PRNA 4O4UA 2OMFA 3SZVA 3VE2A 4RL9A 2M07A 5JDPA 1HXXA 3UAQA 4AYNA 2XMXA 3QRCA 4F4BA 5DL6A 3RBHA 1ZHWA 4AYDC 2W80C 5ADXL 4G75A 4O3WA 1P4TA 4GHBA 3WI5A 2YNKA 5GV0A 5FVNA 2W81C 1GFQA 4AUIA 7PRNA 2Y0LA 3O0EA 2ERVA 3UU2A 4KRAA 1GFNA 4O3YA 2KZ7A 3LK2A 4GF4A 3WI4A 1BT9A 4AZLA 2Y2XA 3PQSA 2KZ7B 3LK2B 1MM4A 4QQ1A 3UPGA 2F1TA 4B61A 3SZDA 3AA6B 3HWBA 4FOZA 4AYEC 3T20A 2LFUA 3PQUA 4RJWA 2KC0A 2K0LA 2F1VA 3TZGA 2FGRA 3AA0A 2Y0KA 2ZLDA 4FESA 3SY7A 2XE5A 3T24A 2Y7SA 3AA0B 4JCHA 4RLCA 1PRNA 4RLBA 4JFBA 3SYBA 1BH3A 2O4VA 4N58A 4BUMX 5DL8A 2XG6A 2XTRA 2GE4A 4C69X 1ZHYA 5EE2A 5ADXK 4FZMA 4GCPA 4XNKA 4O3XB 5PRNA 1GFPA 3SY9A 4E1TA 4GCSA 4KR4A 4RJXA 3V8UA 2MHLA 3LK41 4FZLA 1H6S1 2ZFGA 5DL5A 2FGQX 2ODJA 1YS5A 1ORMA 1GFMA 3A2SX 3PORA 3VZUX 1ZHTA 1PHOA 3AAAA 3PRNA 4O4XA 2X27X 3POXA 4AFKA 1BXWA 1QJPA 3AAAB 4Z3TA 3POQA 3JTYA 3NSGA 4FT6A 4FZNA 3HOLA 1G90A 4AYID 3AA1A 2LHFA 1MPFA 4FMSA 1HXUA 4LSFA 3T0SA 3LK3A 1OSMA 4O3ZA 4PUXA 4G76A 3FYXA 3LK3B 3VZTX 3HOEA 2JMMA 2Y0HA 4LSIA 4D64A 5AFUL 6PRNA 4AYMC 4D5UA 3VE1A 4D65A 1Q9GA 1Q9FA 1OPFA 1ZHXA 2KXPA 3POUA 2KXPB 3AAEA 3DA3A 2J4UP 3AAEB 4FUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X27 X;  1BXW A;  1QJP A;  1MM5 A;  2MNH A;  2K0L A;  2F1V A;  2N2M A;  2M07 A;  1G90 A;  4RLC A;  3QRC A;  2LHF A;  3GP6 A;  4PUX A;  3QRA A;  1P4T A;  2GE4 A;  3G7G A;  2JMM A;  2M06 A;  1QJ8 A;  2ERV A;  1THQ A;  2MHL A;  1QJ9 A;  2N2L A;  1MM4 A;  1Q9G A;  1ORM A;  1Q9F A;  3C5O A;  2F1T A; 
#chains in the Genus database with same CATH topology
 4K3C A;  2POR A;  2WVP A;  3LK4 2;  5T5F A;  5B66 O;  4LSH A;  8PRN A;  2MNH A;  3BS0 A;  3VZW X;  4K3B A;  4U9C A;  5G26 A;  2QTK A;  2N2M A;  2XE1 A;  3VY8 X;  4FRT A;  2K4T A;  4IL6 O;  3GP6 A;  3PF1 A;  4N59 A;  5G39 A;  2XE2 A;  3QRA A;  5G3A A;  4AKR A;  1ZHZ A;  3AA1 B;  3G7G A;  5GTH O;  4GCQ A;  3DWO X;  2R4P A;  4AKR B;  3SYS A;  2YPV A;  5IYU A;  2KDY A;  2M06 A;  4XNL A;  5D5D A;  1IZN A;  4LSE A;  4C4V A;  1QJ8 A;  2XTQ A;  4KR8 A;  5TIS O;  1THQ A;  1IZN B;  2J1N A;  2R4N A;  3EMN X;  1E54 A;  4C4V B;  1QJ9 A;  3AA7 A;  5AFU K;  3KVD D;  4E1S A;  2N2L A;  2XE3 A;  3K19 A;  1HXT A;  2R88 A;  3AA7 B;  3DA4 A;  3AA6 A;  4AKM A;  4FSO A;  3C5O A;  4FRX A;  3VY9 X;  4FSP A;  3HW9 A;  3A0B O;  4O49 A;  4PR7 A;  1GFO A;  5DL7 A;  3T24 A;  1MM5 A;  2PRN A;  4O4U A;  2OMF A;  2WJQ A;  3SZV A;  3VE2 A;  4RL9 A;  2M07 A;  4N74 A;  5JDP A;  1HXX A;  3UAQ A;  4AYN A;  2XMX A;  3QRC A;  1T16 A;  4F4B A;  5DL6 A;  3RBH A;  1ZHW A;  4AYD C;  2W80 C;  5ADX L;  4G75 A;  4O3W A;  5GTI O;  1P4T A;  1S5L O;  4GHB A;  3WI5 A;  5B5E O;  2YNK A;  5GV0 A;  5FVN A;  2W81 C;  1GFQ A;  4AUI A;  7PRN A;  2Y0L A;  3O0E A;  2X9K A;  2ERV A;  4FUV A;  3UU2 A;  4KRA A;  1GFN A;  4FQE A;  2KZ7 A;  3LK2 A;  4GF4 A;  4O3Y A;  1BT9 A;  3WI4 A;  4AZL A;  2Y2X A;  3PQS A;  2KZ7 B;  3LK2 B;  1MM4 A;  3BRZ A;  4QQ1 A;  3UPG A;  2R4O A;  4CTD A;  2F1T A;  4B61 A;  3SZD A;  3KZI O;  3AA6 B;  3HWB A;  4FOZ A;  4AYE C;  3T20 A;  3JCU O;  2LFU A;  3PQU A;  2F1C X;  4BUM X;  5G38 A;  2JQY A;  2R4L A;  3BRY A;  2KC0 A;  4RJW A;  2K0L A;  2F1V A;  3TZG A;  2FGR A;  3AA0 A;  2AXT O;  2Y0K A;  2ZLD A;  3DWN A;  2XE5 A;  4FES A;  2Y7S A;  3AA0 B;  4JCH A;  4RLC A;  1PRN A;  4RLB A;  4JFB A;  3SYB A;  1BH3 A;  2O4V A;  3DZM A;  4N58 A;  5DL8 A;  3WU2 O;  2XG6 A;  2XTR A;  2GE4 A;  5KAI O;  4C69 X;  1ZHY A;  5EE2 A;  5ADX K;  4FZM A;  4GCP A;  4XNK A;  4O3X B;  5PRN A;  1GFP A;  3SY9 A;  4E1T A;  4GCS A;  4KR4 A;  2IWV A;  4RJX A;  3V8U A;  2MHL A;  3LK4 1;  4FZL A;  2R8A A;  4PJ0 O;  1H6S 1;  3NJT A;  2ZFG A;  5DL5 A;  2FGQ X;  2ODJ A;  1YS5 A;  4UB8 O;  2IWW A;  1ORM A;  5E79 O;  1GFM A;  3A2S X;  5KAF O;  3POR A;  3VZU X;  1ZHT A;  4UB6 O;  1PHO A;  3AAA A;  3PRN A;  4O4X A;  2X27 X;  2WJR A;  3POX A;  1BXW A;  1QJP A;  3AAA B;  4AFK A;  4Z3T A;  3POQ A;  3JTY A;  3NSG A;  4FT6 A;  4FZN A;  3HOL A;  1G90 A;  4AYI D;  3AA1 A;  2LHF A;  1MPF A;  4FMS A;  1HXU A;  4LSF A;  3T0S A;  3LK3 A;  1OSM A;  4O3Z A;  4PUX A;  4G76 A;  3FYX A;  3A0H O;  4N75 A;  3LK3 B;  3VZT X;  3PGU A;  3HOE A;  2JMM A;  2Y0H A;  4LSI A;  3SY7 A;  4D64 A;  5AFU L;  6PRN A;  4AYM C;  2R89 A;  4D5U A;  5H2F O;  3VE1 A;  4D65 A;  1Q9G A;  1Q9F A;  1OPF A;  1ZHX A;  2KXP A;  3PGR A;  3POU A;  4C00 A;  3PGS A;  2KXP B;  3AAE A;  3DA3 A;  2J4U P;  3AAE B;  1T1L A; 
#chains in the Genus database with same CATH homology
 2POR A;  3LK4 2;  5T5F A;  4LSH A;  8PRN A;  2MNH A;  3VZW X;  4U9C A;  5G26 A;  2QTK A;  2N2M A;  2XE1 A;  3VY8 X;  4FRT A;  2K4T A;  3GP6 A;  4N59 A;  2XE2 A;  3QRA A;  4AKR A;  1ZHZ A;  3AA1 B;  3G7G A;  4GCQ A;  4AKR B;  3SYS A;  2YPV A;  5IYU A;  2KDY A;  2M06 A;  4XNL A;  5D5D A;  1IZN A;  4LSE A;  1QJ8 A;  2XTQ A;  4KR8 A;  1THQ A;  1IZN B;  2J1N A;  3EMN X;  5AFU K;  1E54 A;  1QJ9 A;  3AA7 A;  3KVD D;  4E1S A;  2N2L A;  2XE3 A;  3K19 A;  1HXT A;  3AA7 B;  3DA4 A;  4AKM A;  3AA6 A;  4FSO A;  3C5O A;  4FRX A;  3VY9 X;  4FSP A;  3HW9 A;  4O49 A;  1GFO A;  5DL7 A;  1MM5 A;  2PRN A;  4O4U A;  2OMF A;  3SZV A;  3VE2 A;  4RL9 A;  2M07 A;  5JDP A;  1HXX A;  3UAQ A;  4AYN A;  2XMX A;  3QRC A;  4F4B A;  5DL6 A;  3RBH A;  1ZHW A;  4AYD C;  2W80 C;  5ADX L;  4G75 A;  4O3W A;  1P4T A;  4GHB A;  3WI5 A;  2YNK A;  5GV0 A;  5FVN A;  2W81 C;  1GFQ A;  4AUI A;  7PRN A;  2Y0L A;  3O0E A;  2ERV A;  3UU2 A;  4KRA A;  1GFN A;  4O3Y A;  2KZ7 A;  3LK2 A;  4GF4 A;  3WI4 A;  1BT9 A;  4AZL A;  2Y2X A;  3PQS A;  2KZ7 B;  3LK2 B;  1MM4 A;  4QQ1 A;  3UPG A;  2F1T A;  4B61 A;  3SZD A;  3AA6 B;  3HWB A;  4FOZ A;  4AYE C;  3T20 A;  2LFU A;  3PQU A;  4RJW A;  2KC0 A;  2K0L A;  2F1V A;  3TZG A;  2FGR A;  3AA0 A;  2Y0K A;  2ZLD A;  4FES A;  3SY7 A;  2XE5 A;  3T24 A;  2Y7S A;  3AA0 B;  4JCH A;  4RLC A;  1PRN A;  4RLB A;  4JFB A;  3SYB A;  1BH3 A;  2O4V A;  4N58 A;  4BUM X;  5DL8 A;  2XG6 A;  2XTR A;  2GE4 A;  4C69 X;  1ZHY A;  5EE2 A;  5ADX K;  4FZM A;  4GCP A;  4XNK A;  4O3X B;  5PRN A;  1GFP A;  3SY9 A;  4E1T A;  4GCS A;  4KR4 A;  4RJX A;  3V8U A;  2MHL A;  3LK4 1;  4FZL A;  1H6S 1;  2ZFG A;  5DL5 A;  2FGQ X;  2ODJ A;  1YS5 A;  1ORM A;  1GFM A;  3A2S X;  3POR A;  3VZU X;  1ZHT A;  1PHO A;  3AAA A;  3PRN A;  4O4X A;  2X27 X;  3POX A;  4AFK A;  1BXW A;  1QJP A;  3AAA B;  4Z3T A;  3POQ A;  3JTY A;  3NSG A;  4FT6 A;  4FZN A;  3HOL A;  1G90 A;  4AYI D;  3AA1 A;  2LHF A;  1MPF A;  4FMS A;  1HXU A;  4LSF A;  3T0S A;  3LK3 A;  1OSM A;  4O3Z A;  4PUX A;  4G76 A;  3FYX A;  3LK3 B;  3VZT X;  3HOE A;  2JMM A;  2Y0H A;  4LSI A;  4D64 A;  5AFU L;  6PRN A;  4AYM C;  4D5U A;  3VE1 A;  4D65 A;  1Q9G A;  1Q9F A;  1OPF A;  1ZHX A;  2KXP A;  3POU A;  2KXP B;  3AAE A;  3DA3 A;  2J4U P;  3AAE B;  4FUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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