The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
159
|
structure length |
159
|
Chain Sequence |
MKLSEYGLQLQEKQKLRHMYGVNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALEANNYIPDYLSFDPEKMEGTYTRLPERSELPAEINEALIVEFYSR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases.
pubmed doi rcsb |
| molecule tags |
Ribosome
|
| source organism |
Geobacillus stearothermophilus
|
| molecule keywords |
RIBOSOMAL PROTEIN S4 DELTA 41
|
| total genus |
33
|
| structure length |
159
|
| sequence length |
159
|
| ec nomenclature | |
| pdb deposition date | 1999-07-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01479 | S4 | S4 domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Ribosomal Protein S4 Delta 41; Chain A, domain 1 | Ribosomal Protein S4 Delta 41; Chain A, domain 1 | ||
| Alpha Beta | Roll | Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A | RNA-binding S4 domain |
#chains in the Genus database with same CATH superfamily 4B3M D; 4JI6 D; 4DUZ D; 3OTO D; 1FKA D; 1P9K A; 4OUD A; 4JI3 D; 2UU9 D; 4NXM D; 1HNZ D; 5IWA D; 4DR7 D; 4DV3 D; 1N32 D; 4DV2 D; 5LMN D; 4DV6 D; 4LF9 D; 3HP7 A; 3T1Y D; 4DV1 D; 4NXN D; 1KSK A; 2UUC D; 4JV5 D; 1C05 A; 5BR8 D; 1H3E A; 4X65 D; 1N33 D; 1C06 A; 1FJG D; 2UXD D; 4DR5 D; 4JI8 D; 1J5E D; 4B3S D; 2VQE D; 4LFA D; 1N36 D; 2UXB D; 1I94 D; 2K6P A; 4DV7 D; 4GKK D; 2JAN A; 4LFB D; 3DH3 A; 4JI7 D; 4DV4 D; 1H3F A; 4LF8 D; 4DV5 D; 4LF7 D; 4X66 D; 2UUB D; 3KBG A; 1XNQ D; 4LF4 D; 4DV0 D; 4DUY D; 1IBM D; 1IBK D; 4YHH D; 2F4V D; 4LGT A; 2HHH D; 4JI4 D; 4B3T D; 1HR0 D; 2IST A; 2VQF D; 1XMO D; 4X62 D; 3T1H D; 4B3R D; 4LF6 D; 1JH3 A; 5LMU D; 4DR2 D; 4JI1 D; 1IBL D; 4AQY D; 1KSV A; 4DR3 D; 2E5L D; 4KHP D; 4JI5 D; 4DR6 D; 4DR1 D; 4LFC D; 4YY3 D; 4X64 D; 4GKJ D; 4JYA D; 4LF5 D; 2UUA D; 4DR4 D; 4K0K D; 1VIO A; 4JI2 D; 1N34 D; 2ZM6 D; 4OX9 D; 1DM9 A; 1HNW D; 2KTL A; 2UXC D; 1XMQ D; 1HNX D; 1KSL A; 4JI0 D; 1XNR D; #chains in the Genus database with same CATH topology 4B3M D; 4JI6 D; 4DUZ D; 4II3 A; 3OTO D; 3J81 E; 3J7A F; 1FKA D; 1P9K A; 4OUD A; 4JI3 D; 2UU9 D; 4NXM D; 5LL6 S; 5FLX E; 5IT9 E; 1HNZ D; 5IWA D; 4DR7 D; 4DV3 D; 1N32 D; 4DV2 D; 5LMN D; 4DV6 D; 4LF9 D; 2ZTB A; 3HP7 A; 3T1Y D; 4DV1 D; 4NXN D; 1KSK A; 2UUC D; 4JV5 D; 3CMM A; 1C05 A; 5BR8 D; 1H3E A; 4X65 D; 1N33 D; 2NVU B; 1C06 A; 1FJG D; 2UXD D; 4DR5 D; 4JI8 D; 1J5E D; 4B3S D; 2VQE D; 4II2 A; 5KNL A; 4LFA D; 1N36 D; 2UXB D; 1I94 D; 2K6P A; 4DV7 D; 4GKK D; 2JAN A; 2L3N A; 4LFB D; 3ONH A; 3DH3 A; 4JI7 D; 4DV4 D; 1H3F A; 4NNJ A; 4LF8 D; 4DV5 D; 4LF7 D; 4X66 D; 2UUB D; 3KBG A; 1XNQ D; 4LF4 D; 4DV0 D; 4DUY D; 1IBM D; 2I1S A; 1IBK D; 4YHH D; 3KYC B; 2F4V D; 4LGT A; 2HHH D; 4JI4 D; 3FN1 A; 4B3T D; 1HR0 D; 2IST A; 3J80 E; 2VQF D; 1XMO D; 1Y8Q B; 4X62 D; 3T1H D; 4B3R D; 4LF6 D; 1JH3 A; 5LMU D; 4DR2 D; 4JI1 D; 1IBL D; 1Y8R B; 4AQY D; 1KSV A; 3KYD B; 4DR3 D; 5A2Q E; 2E5L D; 4KHP D; 4JI5 D; 4DR6 D; 3ONG A; 4DR1 D; 4LFC D; 4YY3 D; 4X64 D; 4GKJ D; 4JYA D; 4LF5 D; 2UUA D; 4DR4 D; 4K0K D; 1VIO A; 2LQ7 A; 4JI2 D; 1N34 D; 2ZM6 D; 4OX9 D; 3JAM E; 1DM9 A; 1HNW D; 2KTL A; 2UXC D; 5FQ2 B; 1XMQ D; 1HNX D; 1KSL A; 1Y8X B; 4JI0 D; 4W5V B; 1XNR D; #chains in the Genus database with same CATH homology 4B3M D; 4JI6 D; 4DUZ D; 3OTO D; 1FKA D; 1P9K A; 4OUD A; 4JI3 D; 2UU9 D; 4NXM D; 1HNZ D; 5IWA D; 4DR7 D; 4DV3 D; 1N32 D; 4DV2 D; 5LMN D; 4DV6 D; 4LF9 D; 3HP7 A; 3T1Y D; 4DV1 D; 4NXN D; 1KSK A; 2UUC D; 4JV5 D; 1C05 A; 5BR8 D; 1H3E A; 4X65 D; 1N33 D; 1C06 A; 1FJG D; 2UXD D; 4DR5 D; 4JI8 D; 1J5E D; 4B3S D; 2VQE D; 4LFA D; 1N36 D; 2UXB D; 1I94 D; 2K6P A; 4DV7 D; 4GKK D; 2JAN A; 2L3N A; 4LFB D; 3DH3 A; 4JI7 D; 4DV4 D; 1H3F A; 4LF8 D; 4DV5 D; 4LF7 D; 4X66 D; 2UUB D; 3KBG A; 1XNQ D; 4LF4 D; 4DV0 D; 4DUY D; 1IBM D; 1IBK D; 4YHH D; 2F4V D; 4LGT A; 2HHH D; 4JI4 D; 4B3T D; 1HR0 D; 2IST A; 2VQF D; 1XMO D; 4X62 D; 3T1H D; 4B3R D; 4LF6 D; 1JH3 A; 5LMU D; 4DR2 D; 4JI1 D; 1IBL D; 4AQY D; 1KSV A; 4DR3 D; 2E5L D; 4KHP D; 4JI5 D; 4DR6 D; 4DR1 D; 4LFC D; 4YY3 D; 4X64 D; 4GKJ D; 4JYA D; 4LF5 D; 2UUA D; 4DR4 D; 4K0K D; 1VIO A; 4JI2 D; 1N34 D; 2ZM6 D; 4OX9 D; 1DM9 A; 1HNW D; 2KTL A; 2UXC D; 1XMQ D; 1HNX D; 1KSL A; 4JI0 D; 1XNR D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
