1C3MA

Crystal structure of heltuba complexed to man(1-3)man
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
145
structure length
145
Chain Sequence
ASDIAVQAGPWGGNGGKRWLQTAHGGKITSIIIKGGTCIFSIQFVYKDKDNIEYHSGKFGVLGDKAETITFAEDEDITAISGTFGAYYHMTVVTSLTFQTNKKVYGPFGTVASSSFSLPLTKGKFAGFFGNSGDVLDSIGGVVVP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords AGGLUTININ
publication title Helianthus tuberosus lectin reveals a widespread scaffold for mannose-binding lectins.
pubmed doi rcsb
total genus 27
structure length 145
sequence length 145
ec nomenclature
pdb deposition date 1999-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1c3mA00
1J4SA 4AK4A 3R51A 3WOCA 1WS4C 4GX7A 4PIFA 1WS5C 1XEZA 1UGYC 2BN0A 5AV7A 5JM1A 1OUWA 2HYRA 3LLYA 1J4UA 3MIUA 4R6NA 5J4XA 5BN6E 5J50A 1VBPA 2GUDA 1PXDA 3LM1A 3P8SA 5J51A 1WS5A 3APAA 3LLZA 5EXGA 5J4TA 2NU5A 3R50A 3VY7A 1UGYA 2BMYA 4R6QA 4AKDA 4AKCA 4R6RA 3MITA 3WOBA 3LKYA 1C3KA 3LL2A 4AKBA 1ZGSA 3AQGA 1KUJA 2GUEA 1XXQA 1UH1A 4WOGA 3LL1A 2GUXA 3VZGA 4PITA 4PIKA 2NUOA 1X1VA 1XXRA 4R6PA 4MQ0A 3VZFA 1UH0A 1UGWA 1ZGRA 1J4TA 1UGXA 2BMZA 3MIVA 1UGWC 1KU8A 1TOQA 1M26A 2HYQA 1C3NA 4PIUA 3VZEA 3VY6A 3O44A 2JZ4A 1TP8A 1JOTA 1VBOA 2GTYA 4R6OA 2GUCA 3LL0A 4DDNA 3R52A 1WS4A 1C3MA 1JACA
chains in the Genus database with same CATH superfamily
1J4SA 4AK4A 3R51A 4QX0A 3WOCA 1WS4C 4GX7A 4PIFA 4ARXA 1WS5C 1XEZA 3TOWA 1UGYC 2BN0A 5AV7A 5JM1A 1OUWA 2HYRA 3LLYA 1J4UA 4W8JA 3MIUA 4R6NA 5J4XA 5BN6E 5J50A 1VBPA 2GUDA 1PXDA 2QP2A 3EB7A 4D8MA 3LM1A 3P8SA 5J51A 1WS5A 3APAA 3LLZA 5EXGA 5J4TA 2NU5A 3R50A 3VY7A 1UGYA 2BMYA 2C9KA 4R6QA 4AKDA 4AKCA 4R6RA 3MITA 3WOBA 3LKYA 1C3KA 4QX1A 3LL2A 4AKBA 1ZGSA 3AQGA 1KUJA 1W99A 1VMOA 2GUEA 1XXQA 1UH1A 1JI6A 4WOGA 3LL1A 1I5PA 2GUXA 3VZGA 4PITA 4PIKA 2NUOA 1X1VA 1XXRA 4R6PA 4MQ0A 4QX2A 3VZFA 1UH0A 4MOAA 1UGWA 1ZGRA 4ARYA 1J4TA 1UGXA 2BMZA 3MIVA 1UGWC 1KU8A 1TOQA 1M26A 2HYQA 1DLCA 1C3NA 4PIUA 4QX3A 3VZEA 3VY6A 3O44A 2JZ4A 1TP8A 1JOTA 1VBOA 2GTYA 4R6OA 2GUCA 3LL0A 4DDNA 3R52A 1WS4A 1C3MA 1JACA 1CIYA
chains in the Genus database with same CATH topology
1J4SA 4AK4A 3R51A 3WOCA 1WS4C 4GX7A 4PIFA 1WS5C 1XEZA 1UGYC 2BN0A 5AV7A 5JM1A 1OUWA 2HYRA 3LLYA 1J4UA 3MIUA 4R6NA 5J4XA 5BN6E 5J50A 1VBPA 2GUDA 1PXDA 3LM1A 3P8SA 5J51A 1WS5A 3APAA 3LLZA 5EXGA 5J4TA 2NU5A 3R50A 3VY7A 1UGYA 2BMYA 4R6QA 4AKDA 4AKCA 4R6RA 3MITA 3WOBA 3LKYA 1C3KA 3LL2A 4AKBA 1ZGSA 3AQGA 1KUJA 2GUEA 1XXQA 1UH1A 4WOGA 3LL1A 2GUXA 3VZGA 4PITA 4PIKA 2NUOA 1X1VA 1XXRA 4R6PA 4MQ0A 3VZFA 1UH0A 1UGWA 1ZGRA 1J4TA 1UGXA 2BMZA 3MIVA 1UGWC 1KU8A 1TOQA 1M26A 2HYQA 1C3NA 4PIUA 3VZEA 3VY6A 3O44A 2JZ4A 1TP8A 1JOTA 1VBOA 2GTYA 4R6OA 2GUCA 3LL0A 4DDNA 3R52A 1WS4A 1C3MA 1JACA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J4S A;  4AK4 A;  3R51 A;  3WOC A;  1WS4 C;  4GX7 A;  4PIF A;  1WS5 C;  1XEZ A;  1UGY C;  2BN0 A;  5AV7 A;  5JM1 A;  1OUW A;  2HYR A;  3LLY A;  1J4U A;  3MIU A;  4R6N A;  5J4X A;  5BN6 E;  5J50 A;  1VBP A;  2GUD A;  1PXD A;  3LM1 A;  3P8S A;  5J51 A;  1WS5 A;  3APA A;  3LLZ A;  5EXG A;  5J4T A;  2NU5 A;  3R50 A;  3VY7 A;  1UGY A;  2BMY A;  4R6Q A;  4AKD A;  4AKC A;  4R6R A;  3MIT A;  3WOB A;  3LKY A;  1C3K A;  3LL2 A;  4AKB A;  1ZGS A;  3AQG A;  1KUJ A;  2GUE A;  1XXQ A;  1UH1 A;  4WOG A;  3LL1 A;  2GUX A;  3VZG A;  4PIT A;  4PIK A;  2NUO A;  1X1V A;  1XXR A;  4R6P A;  4MQ0 A;  3VZF A;  1UH0 A;  1UGW A;  1ZGR A;  1J4T A;  1UGX A;  2BMZ A;  3MIV A;  1UGW C;  1KU8 A;  1TOQ A;  1M26 A;  2HYQ A;  1C3N A;  4PIU A;  3VZE A;  3VY6 A;  3O44 A;  2JZ4 A;  1TP8 A;  1JOT A;  1VBO A;  2GTY A;  4R6O A;  2GUC A;  3LL0 A;  4DDN A;  3R52 A;  1WS4 A;  1C3M A;  1JAC A; 
#chains in the Genus database with same CATH topology
 1J4S A;  4AK4 A;  3R51 A;  4QX0 A;  3WOC A;  1WS4 C;  4GX7 A;  4PIF A;  4ARX A;  1WS5 C;  1XEZ A;  3TOW A;  1UGY C;  2BN0 A;  5AV7 A;  5JM1 A;  1OUW A;  2HYR A;  3LLY A;  1J4U A;  4W8J A;  3MIU A;  4R6N A;  5J4X A;  5BN6 E;  5J50 A;  1VBP A;  2GUD A;  1PXD A;  2QP2 A;  3EB7 A;  4D8M A;  3LM1 A;  3P8S A;  5J51 A;  1WS5 A;  3APA A;  3LLZ A;  5EXG A;  5J4T A;  2NU5 A;  3R50 A;  3VY7 A;  1UGY A;  2BMY A;  2C9K A;  4R6Q A;  4AKD A;  4AKC A;  4R6R A;  3MIT A;  3WOB A;  3LKY A;  1C3K A;  4QX1 A;  3LL2 A;  4AKB A;  1ZGS A;  3AQG A;  1KUJ A;  1W99 A;  1VMO A;  2GUE A;  1XXQ A;  1UH1 A;  1JI6 A;  4WOG A;  3LL1 A;  1I5P A;  2GUX A;  3VZG A;  4PIT A;  4PIK A;  2NUO A;  1X1V A;  1XXR A;  4R6P A;  4MQ0 A;  4QX2 A;  3VZF A;  1UH0 A;  4MOA A;  1UGW A;  1ZGR A;  4ARY A;  1J4T A;  1UGX A;  2BMZ A;  3MIV A;  1UGW C;  1KU8 A;  1TOQ A;  1M26 A;  2HYQ A;  1DLC A;  1C3N A;  4PIU A;  4QX3 A;  3VZE A;  3VY6 A;  3O44 A;  2JZ4 A;  1TP8 A;  1JOT A;  1VBO A;  2GTY A;  4R6O A;  2GUC A;  3LL0 A;  4DDN A;  3R52 A;  1WS4 A;  1C3M A;  1JAC A;  1CIY A; 
#chains in the Genus database with same CATH homology
 1J4S A;  4AK4 A;  3R51 A;  3WOC A;  1WS4 C;  4GX7 A;  4PIF A;  1WS5 C;  1XEZ A;  1UGY C;  2BN0 A;  5AV7 A;  5JM1 A;  1OUW A;  2HYR A;  3LLY A;  1J4U A;  3MIU A;  4R6N A;  5J4X A;  5BN6 E;  5J50 A;  1VBP A;  2GUD A;  1PXD A;  3LM1 A;  3P8S A;  5J51 A;  1WS5 A;  3APA A;  3LLZ A;  5EXG A;  5J4T A;  2NU5 A;  3R50 A;  3VY7 A;  1UGY A;  2BMY A;  4R6Q A;  4AKD A;  4AKC A;  4R6R A;  3MIT A;  3WOB A;  3LKY A;  1C3K A;  3LL2 A;  4AKB A;  1ZGS A;  3AQG A;  1KUJ A;  2GUE A;  1XXQ A;  1UH1 A;  4WOG A;  3LL1 A;  2GUX A;  3VZG A;  4PIT A;  4PIK A;  2NUO A;  1X1V A;  1XXR A;  4R6P A;  4MQ0 A;  3VZF A;  1UH0 A;  1UGW A;  1ZGR A;  1J4T A;  1UGX A;  2BMZ A;  3MIV A;  1UGW C;  1KU8 A;  1TOQ A;  1M26 A;  2HYQ A;  1C3N A;  4PIU A;  3VZE A;  3VY6 A;  3O44 A;  2JZ4 A;  1TP8 A;  1JOT A;  1VBO A;  2GTY A;  4R6O A;  2GUC A;  3LL0 A;  4DDN A;  3R52 A;  1WS4 A;  1C3M A;  1JAC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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