1C3SA

Crystal structure of an hdac homolog complexed with saha
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
372
structure length
372
Chain Sequence
KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERSQSVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKAKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords HDLP (HISTONE DEACETYLASE-LIKE PROTEIN)
publication title Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors.
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 125
structure length 372
sequence length 372
ec nomenclature
pdb deposition date 1999-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 1c3sA00
5A2SA 1C3RA 3EZTA 2VQMA 4ZUQA 3Q9FA 5G0XA 5THTA 1T64A 3EW8A 3MZ6A 2VQWG 5DC8A 3F07A 5DC5A 4ZUMA 2VQJA 3C10A 4LY1A 3Q9BA 5D1CA 4LXZA 5EEFA 5G17A 4BZ6A 1VKGA 5EF7A 5EEMA 4ZUPA 5FCWA 2GH6A 3RQDA 1T67A 3MZ7A 3MZ3A 3SFHA 4ZUNA 2V5WA 3ZNSA 5G13A 4A69A 5G0YA 5LI3A 5EEIA 4BZ8A 2VQVA 4QA2A 5EFKB 3EZPA 5EFJD 5DC6A 3SFFA 5G10A 4QA4A 5IWGA 3Q9EA 1ZZ3A 3ZNRA 3MENA 5FUEA 1C3SA 5JI5A 5EFNA 5G3WA 3Q9CA 5EEKA 2VCGA 5DC7A 2VQOA 5G1BA 5EENA 4ZUOA 5G11A 2V5XA 4CQFA 4QA6A 5EFHA 3F06A 5EFGA 4QA1A 4QA5A 4BZ9A 5IX0A 1ZZ0A 2VQQA 5G0IA 5D1BA 5THSA 4CBYA 4QA3A 4RN1A 5THUA 5D1DA 3MAXA 5G0GA 5G1AA 3C0ZA 3C0YA 4ZURA 5G0HA 5THVA 3MZ4A 1ZZ1A 5BWZA 4CBTA 4BZ7A 4QA0A 1W22A 5ICNB 5G0JA 4BKXB 4RN0A 5EFBD 4BZ5A 5EF8A 4QA7A 1C3PA 1T69A 5G12A 3F0RA 5G1CA 3EWFA 4RN2A
chains in the Genus database with same CATH superfamily
5A2SA 3KV2A 1C3RA 4IU4A 3EZTA 2VQMA 4ZUQA 3NIPA 3Q9FA 4MYFA 4Q3RC 5G0XA 5THTA 1ZPGA 1T64A 2EF4A 3EW8A 3MZ6A 2VQWG 1D3VA 5DC8A 3F07A 5DC5A 4ZUMA 2VQJA 1WOGA 3SJTA 3E8ZA 3C10A 4LY1A 3Q9BA 5D1CA 4LXZA 4Q3PA 5EEFA 3MFWA 3MMRA 4IE2A 4IXUA 5G17A 2PHAA 4BZ6A 1VKGA 5EF7A 3THHA 4CEVA 4Q3RA 5EEMA 1P8PA 4ZUPA 3SKKA 1P8OA 4GSZA 5FCWA 1GQ6A 2GH6A 3RQDA 4MYLA 1P8NA 3LP7A 1XFKA 1T67A 3MZ7A 5HJAA 3MZ3A 3SFHA 3PZLA 3LP4A 4ZUNA 2V5WA 4RHMA 3ZNSA 1R1OA 3E9BA 4Q42A 5G13A 4A69A 5G0YA 1P8SA 5LI3A 5EEIA 2EIVA 4BZ8A 2CEVA 2VQVA 3E6KA 4QA2A 2PLLA 2PHOA 5EFKB 3SL0A 3EZPA 5EFJD 5DC6A 3SFFA 5G10A 4Q41A 4QA4A 5IWGA 5HJ9A 4RN2A 4MYNA 4IXVA 4Q3QA 4Q3TA 3Q9EA 2AEBA 1ZZ3A 2RLAA 2ZAVA 3THEA 3ZNRA 3MFVA 1HQXA 4Q40A 3DJ8A 3MENA 1P8QA 1T5GA 5FUEA 1C3SA 5RLAA 1TA1A 5JI5A 5EFNA 4FCKA 5G3WA 3LHLA 3Q9CA 1P8MA 1ZPEA 4I06A 3GMZA 5EEKA 3CEVA 4ITYA 2VCGA 3TF3A 5DC7A 4RHJA 2VQOA 4HXQA 5G1BA 1RLAA 5EENA 4ZUOA 5G11A 1HQ5A 3GN0A 2V5XA 4Q3SA 4CQFA 4IE1A 4QA6A 4GWDA 2A0MA 5EFHA 3M1RA 4GSVA 3F06A 2EF5A 4HWWA 1TBLA 1T4TA 3E6VA 4RHIA 1CEVA 4RHKA 5EFGA 4QA1A 4DZ4A 4QA5A 4BZ9A 4HZEA 5IX0A 1ZZ0A 2VQQA 4Q3VA 5G0IA 5D1BA 1TBHA 5THSA 4CBYA 1WOIA 4QA3A 4IE3A 3THJA 1T4RA 1TBJA 4IU0A 4RN1A 5THUA 5CEVA 5D1DA 4G3HA 3MAXA 5G0GA 4MXRA 4FCIA 1WVBA 1HQHA 1P8RA 3C0ZA 3C0YA 5G1AA 1T4PA 4ZURA 3RLAA 1WVAA 3F80A 4RHLA 3MJLA 5G0HA 5THVA 1WOHA 3MZ4A 1T4SA 3NIOA 3TH7A 4IU5A 1ZZ1A 5BWZA 4CBTA 4MYKA 4BZ7A 4QA0A 4IU1A 1T5FA 4Q3UA 1W22A 1HQFA 1GQ7A 4GWCA 5ICNB 5G0JA 4BKXB 4RN0A 5EFBD 3SL1A 4RHQA 4BZ5A 5EF8A 4QA7A 1C3PA 1HQGA 1T69A 4GSMA 3E8QA 4RLAA 5G12A 3F0RA 5G1CA 3EWFA 1PQ3A 3NIQA
chains in the Genus database with same CATH topology
5A2SA 1C3RA 3EZTA 2VQMA 4ZUQA 3Q9FA 5G0XA 5THTA 1T64A 3EW8A 3MZ6A 2VQWG 5DC8A 3F07A 5DC5A 4ZUMA 2VQJA 3C10A 4LY1A 3Q9BA 5D1CA 4LXZA 5EEFA 5G17A 4BZ6A 1VKGA 5EF7A 5EEMA 4ZUPA 5FCWA 2GH6A 3RQDA 1T67A 3MZ7A 3MZ3A 3SFHA 4ZUNA 2V5WA 3ZNSA 5G13A 4A69A 5G0YA 5LI3A 5EEIA 4BZ8A 2VQVA 4QA2A 5EFKB 3EZPA 5EFJD 5DC6A 3SFFA 5G10A 4QA4A 5IWGA 3Q9EA 1ZZ3A 3ZNRA 3MENA 5FUEA 1C3SA 5JI5A 5EFNA 5G3WA 3Q9CA 5EEKA 2VCGA 5DC7A 2VQOA 5G1BA 5EENA 4ZUOA 5G11A 2V5XA 4CQFA 4QA6A 5EFHA 3F06A 5EFGA 4QA1A 4QA5A 4BZ9A 5IX0A 1ZZ0A 2VQQA 5G0IA 5D1BA 5THSA 4CBYA 4QA3A 4RN1A 5THUA 5D1DA 3MAXA 5G0GA 5G1AA 3C0ZA 3C0YA 4ZURA 5G0HA 5THVA 3MZ4A 1ZZ1A 5BWZA 4CBTA 4BZ7A 4QA0A 1W22A 5ICNB 5G0JA 4BKXB 4RN0A 5EFBD 4BZ5A 5EF8A 4QA7A 1C3PA 1T69A 5G12A 3F0RA 5G1CA 3EWFA 4RN2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A2S A;  1C3R A;  3EZT A;  2VQM A;  4ZUQ A;  3Q9F A;  5G0X A;  5THT A;  1T64 A;  3EW8 A;  3MZ6 A;  2VQW G;  5DC8 A;  3F07 A;  5DC5 A;  4ZUM A;  2VQJ A;  3C10 A;  4LY1 A;  3Q9B A;  5D1C A;  4LXZ A;  5EEF A;  5G17 A;  4BZ6 A;  1VKG A;  5EF7 A;  5EEM A;  4ZUP A;  5FCW A;  2GH6 A;  3RQD A;  1T67 A;  3MZ7 A;  3MZ3 A;  3SFH A;  4ZUN A;  2V5W A;  3ZNS A;  5G13 A;  4A69 A;  5G0Y A;  5LI3 A;  5EEI A;  4BZ8 A;  2VQV A;  4QA2 A;  5EFK B;  3EZP A;  5EFJ D;  5DC6 A;  3SFF A;  5G10 A;  4QA4 A;  5IWG A;  3Q9E A;  1ZZ3 A;  3ZNR A;  3MEN A;  5FUE A;  1C3S A;  5JI5 A;  5EFN A;  5G3W A;  3Q9C A;  5EEK A;  2VCG A;  5DC7 A;  2VQO A;  5G1B A;  5EEN A;  4ZUO A;  5G11 A;  2V5X A;  4CQF A;  4QA6 A;  5EFH A;  3F06 A;  5EFG A;  4QA1 A;  4QA5 A;  4BZ9 A;  5IX0 A;  1ZZ0 A;  2VQQ A;  5G0I A;  5D1B A;  5THS A;  4CBY A;  4QA3 A;  4RN1 A;  5THU A;  5D1D A;  3MAX A;  5G0G A;  5G1A A;  3C0Z A;  3C0Y A;  4ZUR A;  5G0H A;  5THV A;  3MZ4 A;  1ZZ1 A;  5BWZ A;  4CBT A;  4BZ7 A;  4QA0 A;  1W22 A;  5ICN B;  5G0J A;  4BKX B;  4RN0 A;  5EFB D;  4BZ5 A;  5EF8 A;  4QA7 A;  1C3P A;  1T69 A;  5G12 A;  3F0R A;  5G1C A;  3EWF A;  4RN2 A; 
#chains in the Genus database with same CATH topology
 5A2S A;  3KV2 A;  1C3R A;  4IU4 A;  3EZT A;  2VQM A;  4ZUQ A;  3NIP A;  3Q9F A;  4MYF A;  4Q3R C;  5G0X A;  5THT A;  1ZPG A;  1T64 A;  2EF4 A;  3EW8 A;  3MZ6 A;  2VQW G;  1D3V A;  5DC8 A;  3F07 A;  5DC5 A;  4ZUM A;  2VQJ A;  1WOG A;  3SJT A;  3E8Z A;  3C10 A;  4LY1 A;  3Q9B A;  5D1C A;  4LXZ A;  4Q3P A;  5EEF A;  3MFW A;  3MMR A;  4IE2 A;  4IXU A;  5G17 A;  2PHA A;  4BZ6 A;  1VKG A;  5EF7 A;  3THH A;  4CEV A;  4Q3R A;  5EEM A;  1P8P A;  4ZUP A;  3SKK A;  1P8O A;  4GSZ A;  5FCW A;  1GQ6 A;  2GH6 A;  3RQD A;  4MYL A;  1P8N A;  3LP7 A;  1XFK A;  1T67 A;  3MZ7 A;  5HJA A;  3MZ3 A;  3SFH A;  3PZL A;  3LP4 A;  4ZUN A;  2V5W A;  4RHM A;  3ZNS A;  1R1O A;  3E9B A;  4Q42 A;  5G13 A;  4A69 A;  5G0Y A;  1P8S A;  5LI3 A;  5EEI A;  2EIV A;  4BZ8 A;  2CEV A;  2VQV A;  3E6K A;  4QA2 A;  2PLL A;  2PHO A;  5EFK B;  3SL0 A;  3EZP A;  5EFJ D;  5DC6 A;  3SFF A;  5G10 A;  4Q41 A;  4QA4 A;  5IWG A;  5HJ9 A;  4RN2 A;  4MYN A;  4IXV A;  4Q3Q A;  4Q3T A;  3Q9E A;  2AEB A;  1ZZ3 A;  2RLA A;  2ZAV A;  3THE A;  3ZNR A;  3MFV A;  1HQX A;  4Q40 A;  3DJ8 A;  3MEN A;  1P8Q A;  1T5G A;  5FUE A;  1C3S A;  5RLA A;  1TA1 A;  5JI5 A;  5EFN A;  4FCK A;  5G3W A;  3LHL A;  3Q9C A;  1P8M A;  1ZPE A;  4I06 A;  3GMZ A;  5EEK A;  3CEV A;  4ITY A;  2VCG A;  3TF3 A;  5DC7 A;  4RHJ A;  2VQO A;  4HXQ A;  5G1B A;  1RLA A;  5EEN A;  4ZUO A;  5G11 A;  1HQ5 A;  3GN0 A;  2V5X A;  4Q3S A;  4CQF A;  4IE1 A;  4QA6 A;  4GWD A;  2A0M A;  5EFH A;  3M1R A;  4GSV A;  3F06 A;  2EF5 A;  4HWW A;  1TBL A;  1T4T A;  3E6V A;  4RHI A;  1CEV A;  4RHK A;  5EFG A;  4QA1 A;  4DZ4 A;  4QA5 A;  4BZ9 A;  4HZE A;  5IX0 A;  1ZZ0 A;  2VQQ A;  4Q3V A;  5G0I A;  5D1B A;  1TBH A;  5THS A;  4CBY A;  1WOI A;  4QA3 A;  4IE3 A;  3THJ A;  1T4R A;  1TBJ A;  4IU0 A;  4RN1 A;  5THU A;  5CEV A;  5D1D A;  4G3H A;  3MAX A;  5G0G A;  4MXR A;  4FCI A;  1WVB A;  1HQH A;  1P8R A;  3C0Z A;  3C0Y A;  5G1A A;  1T4P A;  4ZUR A;  3RLA A;  1WVA A;  3F80 A;  4RHL A;  3MJL A;  5G0H A;  5THV A;  1WOH A;  3MZ4 A;  1T4S A;  3NIO A;  3TH7 A;  4IU5 A;  1ZZ1 A;  5BWZ A;  4CBT A;  4MYK A;  4BZ7 A;  4QA0 A;  4IU1 A;  1T5F A;  4Q3U A;  1W22 A;  1HQF A;  1GQ7 A;  4GWC A;  5ICN B;  5G0J A;  4BKX B;  4RN0 A;  5EFB D;  3SL1 A;  4RHQ A;  4BZ5 A;  5EF8 A;  4QA7 A;  1C3P A;  1HQG A;  1T69 A;  4GSM A;  3E8Q A;  4RLA A;  5G12 A;  3F0R A;  5G1C A;  3EWF A;  1PQ3 A;  3NIQ A; 
#chains in the Genus database with same CATH homology
 5A2S A;  1C3R A;  3EZT A;  2VQM A;  4ZUQ A;  3Q9F A;  5G0X A;  5THT A;  1T64 A;  3EW8 A;  3MZ6 A;  2VQW G;  5DC8 A;  3F07 A;  5DC5 A;  4ZUM A;  2VQJ A;  3C10 A;  4LY1 A;  3Q9B A;  5D1C A;  4LXZ A;  5EEF A;  5G17 A;  4BZ6 A;  1VKG A;  5EF7 A;  5EEM A;  4ZUP A;  5FCW A;  2GH6 A;  3RQD A;  1T67 A;  3MZ7 A;  3MZ3 A;  3SFH A;  4ZUN A;  2V5W A;  3ZNS A;  5G13 A;  4A69 A;  5G0Y A;  5LI3 A;  5EEI A;  4BZ8 A;  2VQV A;  4QA2 A;  5EFK B;  3EZP A;  5EFJ D;  5DC6 A;  3SFF A;  5G10 A;  4QA4 A;  5IWG A;  3Q9E A;  1ZZ3 A;  3ZNR A;  3MEN A;  5FUE A;  1C3S A;  5JI5 A;  5EFN A;  5G3W A;  3Q9C A;  5EEK A;  2VCG A;  5DC7 A;  2VQO A;  5G1B A;  5EEN A;  4ZUO A;  5G11 A;  2V5X A;  4CQF A;  4QA6 A;  5EFH A;  3F06 A;  5EFG A;  4QA1 A;  4QA5 A;  4BZ9 A;  5IX0 A;  1ZZ0 A;  2VQQ A;  5G0I A;  5D1B A;  5THS A;  4CBY A;  4QA3 A;  4RN1 A;  5THU A;  5D1D A;  3MAX A;  5G0G A;  5G1A A;  3C0Z A;  3C0Y A;  4ZUR A;  5G0H A;  5THV A;  3MZ4 A;  1ZZ1 A;  5BWZ A;  4CBT A;  4BZ7 A;  4QA0 A;  1W22 A;  5ICN B;  5G0J A;  4BKX B;  4RN0 A;  5EFB D;  4BZ5 A;  5EF8 A;  4QA7 A;  1C3P A;  1T69 A;  5G12 A;  3F0R A;  5G1C A;  3EWF A;  4RN2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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