1C5AA

Three-dimensional structure of porcine c5ades*arg from 1h nuclear magnetic resonance data
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
65
structure length
65
Chain Sequence
MLQKKIEEEAAKYKYAMLKKCCYDGAYRNDDETCEERAARIKIGPKCVKAFKDCCYIANQVRAEQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Complement factor
molecule keywords COMPLEMENT C5A ANAPHYLATOXIN
publication title Three-dimensional structure of porcine C5adesArg from 1H nuclear magnetic resonance data.
pubmed doi rcsb
source organism Sus scrofa domestica
total genus 27
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 1990-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01821 ANATO Anaphylotoxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.91.20 Mainly Alpha Up-down Bundle Influenza Virus Matrix Protein; Chain A, domain 1 Anaphylotoxins (complement system) 1c5aA00
4I6OA 4P3BA 1C5AA 5JPNB 4HW5A 3KLSA 4WB3A 1KJSA 4P3AA 5B4PB 3HQAA 4HWJA 4UU9C 3HQBA 2A73B 4WB2A 1CFAA 2B39A 3CU7A 4P39A 4FXKB
chains in the Genus database with same CATH superfamily
4I6OA 3MD2A 4P3BA 1C5AA 5JPNB 4HW5A 3KLSA 4WB3A 1KJSA 4P3AA 5B4PB 4ITVA 3HQAA 4HWJA 5JPMB 5CQEA 1AA7A 2Z16A 4IQ4A 4UU9C 3HQBA 2A73B 4WB2A 4D9JA 4FXGB 1CFAA 2B39A 3CU7A 4P39A 4PUSA 3VDXA 1EA3A 4FXKB
chains in the Genus database with same CATH topology
4I6OA 4P3BA 1C5AA 5JPNB 4HW5A 3KLSA 4WB3A 1KJSA 4P3AA 5B4PB 3HQAA 4HWJA 4UU9C 3HQBA 2A73B 4WB2A 1CFAA 2B39A 3CU7A 4P39A 4FXKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I6O A;  4P3B A;  1C5A A;  5JPN B;  4HW5 A;  3KLS A;  4WB3 A;  1KJS A;  4P3A A;  5B4P B;  3HQA A;  4HWJ A;  4UU9 C;  3HQB A;  2A73 B;  4WB2 A;  1CFA A;  2B39 A;  3CU7 A;  4P39 A;  4FXK B; 
#chains in the Genus database with same CATH topology
 4I6O A;  3MD2 A;  4P3B A;  1C5A A;  5JPN B;  4HW5 A;  3KLS A;  4WB3 A;  1KJS A;  4P3A A;  5B4P B;  4ITV A;  3HQA A;  4HWJ A;  5JPM B;  5CQE A;  1AA7 A;  2Z16 A;  4IQ4 A;  4UU9 C;  3HQB A;  2A73 B;  4WB2 A;  4D9J A;  4FXG B;  1CFA A;  2B39 A;  3CU7 A;  4P39 A;  4PUS A;  3VDX A;  1EA3 A;  4FXK B; 
#chains in the Genus database with same CATH homology
 4I6O A;  4P3B A;  1C5A A;  5JPN B;  4HW5 A;  3KLS A;  4WB3 A;  1KJS A;  4P3A A;  5B4P B;  3HQA A;  4HWJ A;  4UU9 C;  3HQB A;  2A73 B;  4WB2 A;  1CFA A;  2B39 A;  3CU7 A;  4P39 A;  4FXK B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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