1C5EA

Bacteriophage lambda head protein d
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
95
structure length
95
Chain Sequence
b'SDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords HEAD DECORATION PROTEIN
publication title Novel fold and capsid-binding properties of the lambda-phage display platform protein gpD.
pubmed doi rcsb
source organism Enterobacteria phage lambda
molecule tags Viral protein
total genus 15
structure length 95
sequence length 95
chains with identical sequence B, C
ec nomenclature
pdb deposition date 1999-11-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein; Chain: A, Head decoration protein D 1c5eA00
1TD4A 3GQHA 1TD3A 1TCZA 1C5EA 1VD0A 1TD0A 3GQKA 3SUCA
chains in the Genus database with same CATH superfamily
1TD4A 3GQHA 1TD3A 1TCZA 1C5EA 1VD0A 1TD0A 3GQKA 3SUCA
chains in the Genus database with same CATH topology
1TD4A 3GQHA 1TD3A 1TCZA 1C5EA 1VD0A 1TD0A 3GQKA 3SUCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TD4 A;  3GQH A;  1TD3 A;  1TCZ A;  1C5E A;  1VD0 A;  1TD0 A;  3GQK A;  3SUC A; 
#chains in the Genus database with same CATH topology
 1TD4 A;  3GQH A;  1TD3 A;  1TCZ A;  1C5E A;  1VD0 A;  1TD0 A;  3GQK A;  3SUC A; 
#chains in the Genus database with same CATH homology
 1TD4 A;  3GQH A;  1TD3 A;  1TCZ A;  1C5E A;  1VD0 A;  1TD0 A;  3GQK A;  3SUC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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