1C8AA

Nmr structure of intramolecular dimer antifreeze protein rd3, 40 sa structures
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
134
structure length
134
Chain Sequence
NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPNLVGMQVNRAVPLGTTLMPDMVKNYEDGTTSPGLKSVVANQLIPINTALTLVMMKAEEVSPKGIPSEEISKLVGMQVNRAVYLDQTLMPDMVKNYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords PROTEIN (ANTIFREEZE PROTEIN TYPE III)
publication title NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
pubmed doi rcsb
source organism Pachycara brachycephalum
total genus 11
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2000-05-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 1c8aA01
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 1c8aA02
4UR6A 3CM4A 2JIAA 3NLAA 6MSIA 1VLIA 1JABA 4NY6A 4IPIA 2AMEA 1UCSA 1C89A 1EKLA 3QF6A 1MSJA 4IPJA 1XUUA 9AMEA 8MSIA 3RDNA 1KDFA 2MSIA 7MSIA 2WQPA 1HG7A 1MSIA 3FRNA 8AMEA 4UR4A 1OPSA 4AMEA 9MSIA 7AMEA 2ZDRA 1AMEA 1B7KA 1KDEA 3AMEA 6AMEA 1B7IA 1WVOA 1B7JA 1GZIA 2LX3A 3MSIA 1C8AA 5MSIA 4MSIA 3G8RA 2SPGA 2MSJA 1XUZA 2LX2A
chains in the Genus database with same CATH superfamily
4UR6A 3CM4A 2JIAA 3NLAA 6MSIA 1VLIA 1JABA 4NY6A 4IPIA 2AMEA 1UCSA 3K3SA 1C89A 1EKLA 3LAZA 3QF6A 1MSJA 4IPJA 1XUUA 9AMEA 8MSIA 3RDNA 1KDFA 2MSIA 7MSIA 2WQPA 1HG7A 1MSIA 3FRNA 8AMEA 4UR4A 1OPSA 4AMEA 9MSIA 7AMEA 2ZDRA 1AMEA 1B7KA 1KDEA 3AMEA 6AMEA 1B7IA 1WVOA 1B7JA 1GZIA 2LX3A 3MSIA 1C8AA 5MSIA 4MSIA 3G8RA 2SPGA 2MSJA 1XUZA 2LX2A
chains in the Genus database with same CATH topology
4UR6A 3CM4A 2JIAA 3NLAA 6MSIA 1VLIA 1JABA 4NY6A 4IPIA 2AMEA 1UCSA 1C89A 1EKLA 3QF6A 1MSJA 4IPJA 1XUUA 9AMEA 8MSIA 3RDNA 1KDFA 2MSIA 7MSIA 2WQPA 1HG7A 1MSIA 3FRNA 8AMEA 4UR4A 1OPSA 4AMEA 9MSIA 7AMEA 2ZDRA 1AMEA 1B7KA 1KDEA 3AMEA 6AMEA 1B7IA 1WVOA 1B7JA 1GZIA 2LX3A 3MSIA 1C8AA 5MSIA 4MSIA 3G8RA 2SPGA 2MSJA 1XUZA 2LX2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UR6 A;  3CM4 A;  2JIA A;  3NLA A;  6MSI A;  1VLI A;  1JAB A;  4NY6 A;  4IPI A;  2AME A;  1UCS A;  1C89 A;  1EKL A;  3QF6 A;  1MSJ A;  4IPJ A;  1XUU A;  9AME A;  8MSI A;  3RDN A;  1KDF A;  2MSI A;  7MSI A;  2WQP A;  1HG7 A;  1MSI A;  3FRN A;  8AME A;  4UR4 A;  1OPS A;  4AME A;  9MSI A;  7AME A;  2ZDR A;  1AME A;  1B7K A;  1KDE A;  3AME A;  6AME A;  1B7I A;  1WVO A;  1B7J A;  1GZI A;  2LX3 A;  3MSI A;  1C8A A;  5MSI A;  4MSI A;  3G8R A;  2SPG A;  2MSJ A;  1XUZ A;  2LX2 A; 
#chains in the Genus database with same CATH topology
 4UR6 A;  3CM4 A;  2JIA A;  3NLA A;  6MSI A;  1VLI A;  1JAB A;  4NY6 A;  4IPI A;  2AME A;  1UCS A;  3K3S A;  1C89 A;  1EKL A;  3LAZ A;  3QF6 A;  1MSJ A;  4IPJ A;  1XUU A;  9AME A;  8MSI A;  3RDN A;  1KDF A;  2MSI A;  7MSI A;  2WQP A;  1HG7 A;  1MSI A;  3FRN A;  8AME A;  4UR4 A;  1OPS A;  4AME A;  9MSI A;  7AME A;  2ZDR A;  1AME A;  1B7K A;  1KDE A;  3AME A;  6AME A;  1B7I A;  1WVO A;  1B7J A;  1GZI A;  2LX3 A;  3MSI A;  1C8A A;  5MSI A;  4MSI A;  3G8R A;  2SPG A;  2MSJ A;  1XUZ A;  2LX2 A; 
#chains in the Genus database with same CATH homology
 4UR6 A;  3CM4 A;  2JIA A;  3NLA A;  6MSI A;  1VLI A;  1JAB A;  4NY6 A;  4IPI A;  2AME A;  1UCS A;  1C89 A;  1EKL A;  3QF6 A;  1MSJ A;  4IPJ A;  1XUU A;  9AME A;  8MSI A;  3RDN A;  1KDF A;  2MSI A;  7MSI A;  2WQP A;  1HG7 A;  1MSI A;  3FRN A;  8AME A;  4UR4 A;  1OPS A;  4AME A;  9MSI A;  7AME A;  2ZDR A;  1AME A;  1B7K A;  1KDE A;  3AME A;  6AME A;  1B7I A;  1WVO A;  1B7J A;  1GZI A;  2LX3 A;  3MSI A;  1C8A A;  5MSI A;  4MSI A;  3G8R A;  2SPG A;  2MSJ A;  1XUZ A;  2LX2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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