1CA1A

Alpha-toxin from clostridium perfringens
Total Genus 137
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
370
structure length
370
Chain Sequence
WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTVGCKTNEDFYADILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKVIANGKVVVDKDINEWISGNSTYNIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords ALPHA-TOXIN
publication title Structure of the key toxin in gas gangrene.
pubmed doi rcsb
source organism Clostridium perfringens
total genus 137
structure length 370
sequence length 370
ec nomenclature ec 3.1.4.3: Phospholipase C.
pdb deposition date 1998-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00882 Zn_dep_PLPC Zinc dependent phospholipase C
A PF01477 PLAT PLAT/LH2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.575.10 Mainly Alpha Orthogonal Bundle P1 Nuclease P1 Nuclease 1ca1A01
2.60.60.20 Mainly Beta Sandwich Lipoxygenase-1 PLAT/LH2 domain 1ca1A02
1RP1A 5FBAA 1BU8A 5EEOA 1QMDA 1Y4KA 5FBGA 1N8QA 4JDGA 1LNHA 1FGTA 3BNDA 4DJ4A 3BNEA 1CA1A 3CWZB 2FFZA 2SBLA 3FG3A 1AK0A 1LPAB 1RRHA 1AH7A 5FBDA 1N8SA 2IUJA 1ROVA 4CXVA 5FBFA 1P6EA 4CXOA 2P0MA 1FGOA 5FBCA 2FGNA 2WXTA 5FB9A 3V98A 4WHAA 1FGRA 1GYGA 1W52X 2OXEA 1QM6A 3BNBA 4QWTA 4CWMA 5FBBA 1NO3A 1JNQA 1IK3A 2WY6A 3BNCA 4NREA 1KHOA 3V92A 1P6DA 3FG1A 4CXPA 1HPLA 2PVSA 1RRLA 2PPLA 1P5XA 1GPLA 3W52A 3O8YA 1F8NA 3PZWA 2FNQA 3VF1A 3FG4A 1FGMA 1LPBB 1ETHA 3V99A 3SNGA 2IUKA 4WFOA 1HU9A 2WXUA 2HUCA 1OLPA 1FGQA 1YGEA 1LOXA
chains in the Genus database with same CATH superfamily
1RP1A 5FBAA 1BU8A 5EEOA 1QMDA 2KXTA 1Y4KA 5FBGA 1N8QA 4JDGA 1LNHA 1FGTA 3BNDA 4DJ4A 3BNEA 1CA1A 3CWZB 2FFZA 2SBLA 3FG3A 1AK0A 1LPAB 1RRHA 2XHJA 1AH7A 5FBDA 2LG7A 1N8SA 2XFEA 2IUJA 1ROVA 4CXVA 5FBFA 1P6EA 4CXOA 2P0MA 1FGOA 3U6GA 5FBCA 2FGNA 2WXTA 5FB9A 3V98A 4WHAA 1FGRA 1GYGA 1W52X 2OXEA 1QM6A 3BNBA 4QWTA 2LRGA 4CWMA 5FBBA 1NO3A 1JNQA 4QEYA 1IK3A 2WY6A 3BNCA 4NREA 1KHOA 3V92A 1P6DA 3FG1A 4CXPA 1HPLA 2QNGA 2XHHA 2PVSA 1RRLA 2PPLA 2XFDA 1P5XA 1GPLA 3W52A 3O8YA 3IBZA 2LGEA 1F8NA 3PZWA 2FNQA 3VF1A 3FG4A 1FGMA 1LPBB 2KXVA 1ETHA 3V99A 3SNGA 2IUKA 4WFOA 1HU9A 2WXUA 2HUCA 1OLPA 1FGQA 1YGEA 1LOXA 2QZ7A
chains in the Genus database with same CATH topology
1RP1A 5FBAA 1BU8A 5EEOA 1QMDA 1Y4KA 5FBGA 1N8QA 4JDGA 1LNHA 1FGTA 3BNDA 4DJ4A 3BNEA 1CA1A 3CWZB 2FFZA 2SBLA 3FG3A 1AK0A 1LPAB 1RRHA 1AH7A 5FBDA 1N8SA 2IUJA 1ROVA 4CXVA 5FBFA 1P6EA 4CXOA 2P0MA 1FGOA 5FBCA 2FGNA 2WXTA 5FB9A 3V98A 4WHAA 1FGRA 1GYGA 1W52X 2OXEA 1QM6A 3BNBA 4QWTA 4CWMA 5FBBA 1NO3A 1JNQA 1IK3A 2WY6A 3BNCA 4NREA 1KHOA 3V92A 1P6DA 3FG1A 4CXPA 1HPLA 2PVSA 1RRLA 2PPLA 1P5XA 1GPLA 3W52A 3O8YA 1F8NA 3PZWA 2FNQA 3VF1A 3FG4A 1FGMA 1LPBB 1ETHA 3V99A 3SNGA 2IUKA 4WFOA 1HU9A 2WXUA 2HUCA 1OLPA 1FGQA 1YGEA 1LOXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RP1 A;  5FBA A;  1BU8 A;  5EEO A;  1QMD A;  1Y4K A;  5FBG A;  1N8Q A;  4JDG A;  1LNH A;  1FGT A;  3BND A;  4DJ4 A;  3BNE A;  1CA1 A;  3CWZ B;  2FFZ A;  2SBL A;  3FG3 A;  1AK0 A;  1LPA B;  1RRH A;  1AH7 A;  5FBD A;  1N8S A;  2IUJ A;  1ROV A;  4CXV A;  5FBF A;  1P6E A;  4CXO A;  2P0M A;  1FGO A;  5FBC A;  2FGN A;  2WXT A;  5FB9 A;  3V98 A;  4WHA A;  1FGR A;  1GYG A;  1W52 X;  2OXE A;  1QM6 A;  3BNB A;  4QWT A;  4CWM A;  5FBB A;  1NO3 A;  1JNQ A;  1IK3 A;  2WY6 A;  3BNC A;  4NRE A;  1KHO A;  3V92 A;  1P6D A;  3FG1 A;  4CXP A;  1HPL A;  2PVS A;  1RRL A;  2PPL A;  1P5X A;  1GPL A;  3W52 A;  3O8Y A;  1F8N A;  3PZW A;  2FNQ A;  3VF1 A;  3FG4 A;  1FGM A;  1LPB B;  1ETH A;  3V99 A;  3SNG A;  2IUK A;  4WFO A;  1HU9 A;  2WXU A;  2HUC A;  1OLP A;  1FGQ A;  1YGE A;  1LOX A; 
#chains in the Genus database with same CATH topology
 1RP1 A;  5FBA A;  1BU8 A;  5EEO A;  1QMD A;  2KXT A;  1Y4K A;  5FBG A;  1N8Q A;  4JDG A;  1LNH A;  1FGT A;  3BND A;  4DJ4 A;  3BNE A;  1CA1 A;  3CWZ B;  2FFZ A;  2SBL A;  3FG3 A;  1AK0 A;  1LPA B;  1RRH A;  2XHJ A;  1AH7 A;  5FBD A;  2LG7 A;  1N8S A;  2XFE A;  2IUJ A;  1ROV A;  4CXV A;  5FBF A;  1P6E A;  4CXO A;  2P0M A;  1FGO A;  3U6G A;  5FBC A;  2FGN A;  2WXT A;  5FB9 A;  3V98 A;  4WHA A;  1FGR A;  1GYG A;  1W52 X;  2OXE A;  1QM6 A;  3BNB A;  4QWT A;  2LRG A;  4CWM A;  5FBB A;  1NO3 A;  1JNQ A;  4QEY A;  1IK3 A;  2WY6 A;  3BNC A;  4NRE A;  1KHO A;  3V92 A;  1P6D A;  3FG1 A;  4CXP A;  1HPL A;  2QNG A;  2XHH A;  2PVS A;  1RRL A;  2PPL A;  2XFD A;  1P5X A;  1GPL A;  3W52 A;  3O8Y A;  3IBZ A;  2LGE A;  1F8N A;  3PZW A;  2FNQ A;  3VF1 A;  3FG4 A;  1FGM A;  1LPB B;  2KXV A;  1ETH A;  3V99 A;  3SNG A;  2IUK A;  4WFO A;  1HU9 A;  2WXU A;  2HUC A;  1OLP A;  1FGQ A;  1YGE A;  1LOX A;  2QZ7 A; 
#chains in the Genus database with same CATH homology
 1RP1 A;  5FBA A;  1BU8 A;  5EEO A;  1QMD A;  1Y4K A;  5FBG A;  1N8Q A;  4JDG A;  1LNH A;  1FGT A;  3BND A;  4DJ4 A;  3BNE A;  1CA1 A;  3CWZ B;  2FFZ A;  2SBL A;  3FG3 A;  1AK0 A;  1LPA B;  1RRH A;  1AH7 A;  5FBD A;  1N8S A;  2IUJ A;  1ROV A;  4CXV A;  5FBF A;  1P6E A;  4CXO A;  2P0M A;  1FGO A;  5FBC A;  2FGN A;  2WXT A;  5FB9 A;  3V98 A;  4WHA A;  1FGR A;  1GYG A;  1W52 X;  2OXE A;  1QM6 A;  3BNB A;  4QWT A;  4CWM A;  5FBB A;  1NO3 A;  1JNQ A;  1IK3 A;  2WY6 A;  3BNC A;  4NRE A;  1KHO A;  3V92 A;  1P6D A;  3FG1 A;  4CXP A;  1HPL A;  2PVS A;  1RRL A;  2PPL A;  1P5X A;  1GPL A;  3W52 A;  3O8Y A;  1F8N A;  3PZW A;  2FNQ A;  3VF1 A;  3FG4 A;  1FGM A;  1LPB B;  1ETH A;  3V99 A;  3SNG A;  2IUK A;  4WFO A;  1HU9 A;  2WXU A;  2HUC A;  1OLP A;  1FGQ A;  1YGE A;  1LOX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...