1CB9A

Nmr structure with tightly bound water molecules of cytotoxin ii (cardiotoxin) from naja naja oxiana in aqueous solution (major form).
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
LKCKKLVPLFSKTCPAGKNLCYKMFMVAAPHVPVKRGCIDVCPKSSLLVKYVCCNTDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords PROTEIN (CYTOTOXIN 2)
publication title Two forms of cytotoxin II (cardiotoxin) from Naja naja oxiana in aqueous solution: spatial structures with tightly bound water molecules.
pubmed doi rcsb
total genus 9
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 1999-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1cb9A00
3NDSA 1BTEA 1FSCA 1KBAA 3PLCA 1CDQA 1CREA 2H7ZA 2MJYA 2MHYA 2MJ0A 1M9ZA 2H62C 2LA1A 1NXBA 1QKDA 2CCXA 2QJBC 3ERAA 4IYEA 1TXAA 2PJYB 2PJYC 1JE9A 1DRSA 1HAAA 5DU1A 1KS6A 1CODA 1LXGA 2GOOC 2CRSA 1I02A 1KXIA 1CDTA 1HC9B 1MAHF 4ZQYA 2I9BE 4BDTB 1CTXA 1IQ9A 1ERGA 2HLQA 1HC9A 2OFSA 2L5SA 4HQPF 1JBDA 1KBSA 1RL5A 1CDSA 1JGKA 1LX5B 2H8UA 2MJ4A 1ZADA 1ONJA 2UWRA 5DO6A 1IK8A 2CRTA 3EVSC 2H7ZB 1CVOA 5EBXA 3BT1U 1KC4A 1FFJA 3EBXA 2H64B 2H64C 1IKCA 1CRFA 3U74U 1ES7B 1G6MA 2NBTA 5IMYC 2H5FA 2BTXA 4BIKB 2ABXA 1RGJA 1FRAA 2MUOA 1L4WA 2H62D 1LXHA 1TXBA 1NYSA 2X8BB 3BT2U 2CTXA 2QJAC 1KU6B 4UY2C 1QM7A 1BXPA 1KL8A 1NEAA 2MUPA 3QB4B 2LCRA 1MR6A 1ERAA 2VLWA 1F94A 6EBXA 1NTXA 1HOYA 4QTIU 2JVEA 3VTSA 1TFSA 1H0JA 2JQPA 3U73U 2FD6U 1QKEA 1CCQA 1TGXA 1ABTA 4FAOE 1FSSB 4P7UA 1REWC 2BHIA 4LFTA 4RUDA 2ERAA 1CHVS 3FEVA 2N99A 1VB0A 2K3GA 4EY8B 1CB9A 3HH7A 5DZ5A 3LAQU 3NH7A 1LJZA 1HAJA 1S4YA 1FASA 1IDGA 2QC1A 1IJCA 2J8BA 1XT3A 2L03A 1CXNA 1B41B 1FF4A 1V6PA 1NTNA 4XJJA 1CXOA 4FAOC 1W6BA 4AEAA 1IDIA 1KBTA 2UX2A 2HLRA 1KFHA 4DO8A 1IDHA 1UG4A 3NEQA 1LSIA 2MFAA 1IDLA 4OM5A 2CDXA 1CDRA 1KTZB 1F8UB 4OM4A 5IMTD 1COEA 3KFDE 3KFDI 1NORA 2QJ9C 1NYUA 1PLOA 2GOOB 1YWHA
chains in the Genus database with same CATH superfamily
3NDSA 1BTEA 1FSCA 1KBAA 3PLCA 1CDQA 1CREA 2H7ZA 2MJYA 2MHYA 2MJ0A 1M9ZA 2H62C 2LA1A 1NXBA 1QKDA 2CCXA 2QJBC 3ERAA 4IYEA 1TXAA 2PJYB 2PJYC 1JE9A 1DRSA 1HAAA 5DU1A 1KS6A 1CODA 1LXGA 2GOOC 2CRSA 1I02A 1KXIA 1CDTA 1HC9B 1MAHF 4ZQYA 2I9BE 4BDTB 1CTXA 1IQ9A 1ERGA 2HLQA 1HC9A 2OFSA 2L5SA 4HQPF 1JBDA 1KBSA 1RL5A 1CDSA 1JGKA 1LX5B 2H8UA 2MJ4A 1ZADA 1ONJA 2UWRA 5DO6A 1IK8A 2CRTA 3EVSC 2H7ZB 1CVOA 5EBXA 3BT1U 1KC4A 1FFJA 3EBXA 2H64B 2H64C 1IKCA 1CRFA 3U74U 1ES7B 1G6MA 2NBTA 5IMYC 2H5FA 2BTXA 4BIKB 2ABXA 1RGJA 1FRAA 2MUOA 1L4WA 2H62D 1LXHA 1TXBA 1NYSA 2X8BB 3BT2U 2CTXA 2QJAC 1KU6B 4UY2C 1QM7A 1BXPA 1KL8A 1NEAA 2MUPA 3QB4B 2LCRA 1MR6A 1ERAA 2VLWA 1F94A 6EBXA 1NTXA 1HOYA 4QTIU 2JVEA 3VTSA 1TFSA 1H0JA 2JQPA 3U73U 2FD6U 1QKEA 1CCQA 1TGXA 1ABTA 4FAOE 1FSSB 4P7UA 1REWC 2BHIA 4LFTA 4RUDA 2ERAA 1CHVS 3FEVA 2N99A 1VB0A 2K3GA 4EY8B 1CB9A 3HH7A 5DZ5A 3LAQU 3NH7A 1LJZA 1HAJA 1S4YA 1FASA 1IDGA 2QC1A 1IJCA 2J8BA 1XT3A 2L03A 1CXNA 1B41B 1FF4A 1V6PA 1NTNA 4XJJA 1CXOA 4FAOC 1W6BA 4AEAA 1IDIA 1KBTA 2UX2A 2HLRA 1KFHA 4DO8A 1IDHA 1UG4A 3NEQA 1LSIA 2MFAA 1IDLA 4OM5A 2CDXA 1CDRA 1KTZB 1F8UB 4OM4A 5IMTD 1COEA 3KFDE 3KFDI 1NORA 2QJ9C 1NYUA 1PLOA 4KSNA 2GOOB 1YWHA
chains in the Genus database with same CATH topology
3NDSA 1BTEA 1FSCA 1KBAA 3PLCA 1CDQA 1CREA 2H7ZA 2MJYA 2MHYA 2MJ0A 1M9ZA 2H62C 2LA1A 1NXBA 1QKDA 2CCXA 2QJBC 3ERAA 4IYEA 1TXAA 2PJYB 2PJYC 1JE9A 1DRSA 1HAAA 5DU1A 1KS6A 1CODA 1LXGA 2GOOC 2CRSA 1I02A 1KXIA 1CDTA 1HC9B 1MAHF 4ZQYA 2I9BE 4BDTB 1CTXA 1IQ9A 1ERGA 2HLQA 1HC9A 2OFSA 2L5SA 4HQPF 1JBDA 1KBSA 1RL5A 1CDSA 1JGKA 1LX5B 2H8UA 2MJ4A 1ZADA 1ONJA 2UWRA 5DO6A 1IK8A 2CRTA 3EVSC 2H7ZB 1CVOA 5EBXA 3BT1U 1KC4A 1FFJA 3EBXA 2H64B 2H64C 1IKCA 1CRFA 3U74U 1ES7B 1G6MA 2NBTA 5IMYC 2H5FA 2BTXA 4BIKB 2ABXA 1RGJA 1FRAA 2MUOA 1L4WA 2H62D 1LXHA 1TXBA 1NYSA 2X8BB 3BT2U 2CTXA 2QJAC 1KU6B 4UY2C 1QM7A 1BXPA 1KL8A 1NEAA 2MUPA 3QB4B 2LCRA 1MR6A 1ERAA 2VLWA 1F94A 6EBXA 1NTXA 1HOYA 4QTIU 2JVEA 3VTSA 1TFSA 1H0JA 2JQPA 3U73U 2FD6U 1QKEA 1CCQA 1TGXA 1ABTA 4FAOE 1FSSB 4P7UA 1REWC 2BHIA 4LFTA 4RUDA 2ERAA 1CHVS 3FEVA 2N99A 1VB0A 2K3GA 4EY8B 1CB9A 3HH7A 5DZ5A 3LAQU 3NH7A 1LJZA 1HAJA 1S4YA 1FASA 1IDGA 2QC1A 1IJCA 2J8BA 1XT3A 2L03A 1CXNA 1B41B 1FF4A 1V6PA 1NTNA 4XJJA 1CXOA 4FAOC 1W6BA 4AEAA 1IDIA 1KBTA 2UX2A 2HLRA 1KFHA 4DO8A 1IDHA 1UG4A 3NEQA 1LSIA 2MFAA 1IDLA 4OM5A 2CDXA 1CDRA 1KTZB 1F8UB 4OM4A 5IMTD 1COEA 3KFDE 3KFDI 1NORA 2QJ9C 1NYUA 1PLOA 4KSNA 2GOOB 1YWHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NDS A;  1BTE A;  1FSC A;  1KBA A;  3PLC A;  1CDQ A;  1CRE A;  2H7Z A;  2MJY A;  2MHY A;  2MJ0 A;  1M9Z A;  2H62 C;  2LA1 A;  1NXB A;  1QKD A;  2CCX A;  2QJB C;  3ERA A;  4IYE A;  1TXA A;  2PJY B;  2PJY C;  1JE9 A;  1DRS A;  1HAA A;  5DU1 A;  1KS6 A;  1COD A;  1LXG A;  2GOO C;  2CRS A;  1I02 A;  1KXI A;  1CDT A;  1HC9 B;  1MAH F;  4ZQY A;  2I9B E;  4BDT B;  1CTX A;  1IQ9 A;  1ERG A;  2HLQ A;  1HC9 A;  2OFS A;  2L5S A;  4HQP F;  1JBD A;  1KBS A;  1RL5 A;  1CDS A;  1JGK A;  1LX5 B;  2H8U A;  2MJ4 A;  1ZAD A;  1ONJ A;  2UWR A;  5DO6 A;  1IK8 A;  2CRT A;  3EVS C;  2H7Z B;  1CVO A;  5EBX A;  3BT1 U;  1KC4 A;  1FFJ A;  3EBX A;  2H64 B;  2H64 C;  1IKC A;  1CRF A;  3U74 U;  1ES7 B;  1G6M A;  2NBT A;  5IMY C;  2H5F A;  2BTX A;  4BIK B;  2ABX A;  1RGJ A;  1FRA A;  2MUO A;  1L4W A;  2H62 D;  1LXH A;  1TXB A;  1NYS A;  2X8B B;  3BT2 U;  2CTX A;  2QJA C;  1KU6 B;  4UY2 C;  1QM7 A;  1BXP A;  1KL8 A;  1NEA A;  2MUP A;  3QB4 B;  2LCR A;  1MR6 A;  1ERA A;  2VLW A;  1F94 A;  6EBX A;  1NTX A;  1HOY A;  4QTI U;  2JVE A;  3VTS A;  1TFS A;  1H0J A;  2JQP A;  3U73 U;  2FD6 U;  1QKE A;  1CCQ A;  1TGX A;  1ABT A;  4FAO E;  1FSS B;  4P7U A;  1REW C;  2BHI A;  4LFT A;  4RUD A;  2ERA A;  1CHV S;  3FEV A;  2N99 A;  1VB0 A;  2K3G A;  4EY8 B;  1CB9 A;  3HH7 A;  5DZ5 A;  3LAQ U;  3NH7 A;  1LJZ A;  1HAJ A;  1S4Y A;  1FAS A;  1IDG A;  2QC1 A;  1IJC A;  2J8B A;  1XT3 A;  2L03 A;  1CXN A;  1B41 B;  1FF4 A;  1V6P A;  1NTN A;  4XJJ A;  1CXO A;  4FAO C;  1W6B A;  4AEA A;  1IDI A;  1KBT A;  2UX2 A;  2HLR A;  1KFH A;  4DO8 A;  1IDH A;  1UG4 A;  3NEQ A;  1LSI A;  2MFA A;  1IDL A;  4OM5 A;  2CDX A;  1CDR A;  1KTZ B;  1F8U B;  4OM4 A;  5IMT D;  1COE A;  3KFD E;  3KFD I;  1NOR A;  2QJ9 C;  1NYU A;  1PLO A;  2GOO B;  1YWH A; 
#chains in the Genus database with same CATH topology
 3NDS A;  1BTE A;  1FSC A;  1KBA A;  3PLC A;  1CDQ A;  1CRE A;  2H7Z A;  2MJY A;  2MHY A;  2MJ0 A;  1M9Z A;  2H62 C;  2LA1 A;  1NXB A;  1QKD A;  2CCX A;  2QJB C;  3ERA A;  4IYE A;  1TXA A;  2PJY B;  2PJY C;  1JE9 A;  1DRS A;  1HAA A;  5DU1 A;  1KS6 A;  1COD A;  1LXG A;  2GOO C;  2CRS A;  1I02 A;  1KXI A;  1CDT A;  1HC9 B;  1MAH F;  4ZQY A;  2I9B E;  4BDT B;  1CTX A;  1IQ9 A;  1ERG A;  2HLQ A;  1HC9 A;  2OFS A;  2L5S A;  4HQP F;  1JBD A;  1KBS A;  1RL5 A;  1CDS A;  1JGK A;  1LX5 B;  2H8U A;  2MJ4 A;  1ZAD A;  1ONJ A;  2UWR A;  5DO6 A;  1IK8 A;  2CRT A;  3EVS C;  2H7Z B;  1CVO A;  5EBX A;  3BT1 U;  1KC4 A;  1FFJ A;  3EBX A;  2H64 B;  2H64 C;  1IKC A;  1CRF A;  3U74 U;  1ES7 B;  1G6M A;  2NBT A;  5IMY C;  2H5F A;  2BTX A;  4BIK B;  2ABX A;  1RGJ A;  1FRA A;  2MUO A;  1L4W A;  2H62 D;  1LXH A;  1TXB A;  1NYS A;  2X8B B;  3BT2 U;  2CTX A;  2QJA C;  1KU6 B;  4UY2 C;  1QM7 A;  1BXP A;  1KL8 A;  1NEA A;  2MUP A;  3QB4 B;  2LCR A;  1MR6 A;  1ERA A;  2VLW A;  1F94 A;  6EBX A;  1NTX A;  1HOY A;  4QTI U;  2JVE A;  3VTS A;  1TFS A;  1H0J A;  2JQP A;  3U73 U;  2FD6 U;  1QKE A;  1CCQ A;  1TGX A;  1ABT A;  4FAO E;  1FSS B;  4P7U A;  1REW C;  2BHI A;  4LFT A;  4RUD A;  2ERA A;  1CHV S;  3FEV A;  2N99 A;  1VB0 A;  2K3G A;  4EY8 B;  1CB9 A;  3HH7 A;  5DZ5 A;  3LAQ U;  3NH7 A;  1LJZ A;  1HAJ A;  1S4Y A;  1FAS A;  1IDG A;  2QC1 A;  1IJC A;  2J8B A;  1XT3 A;  2L03 A;  1CXN A;  1B41 B;  1FF4 A;  1V6P A;  1NTN A;  4XJJ A;  1CXO A;  4FAO C;  1W6B A;  4AEA A;  1IDI A;  1KBT A;  2UX2 A;  2HLR A;  1KFH A;  4DO8 A;  1IDH A;  1UG4 A;  3NEQ A;  1LSI A;  2MFA A;  1IDL A;  4OM5 A;  2CDX A;  1CDR A;  1KTZ B;  1F8U B;  4OM4 A;  5IMT D;  1COE A;  3KFD E;  3KFD I;  1NOR A;  2QJ9 C;  1NYU A;  1PLO A;  4KSN A;  2GOO B;  1YWH A; 
#chains in the Genus database with same CATH homology
 3NDS A;  1BTE A;  1FSC A;  1KBA A;  3PLC A;  1CDQ A;  1CRE A;  2H7Z A;  2MJY A;  2MHY A;  2MJ0 A;  1M9Z A;  2H62 C;  2LA1 A;  1NXB A;  1QKD A;  2CCX A;  2QJB C;  3ERA A;  4IYE A;  1TXA A;  2PJY B;  2PJY C;  1JE9 A;  1DRS A;  1HAA A;  5DU1 A;  1KS6 A;  1COD A;  1LXG A;  2GOO C;  2CRS A;  1I02 A;  1KXI A;  1CDT A;  1HC9 B;  1MAH F;  4ZQY A;  2I9B E;  4BDT B;  1CTX A;  1IQ9 A;  1ERG A;  2HLQ A;  1HC9 A;  2OFS A;  2L5S A;  4HQP F;  1JBD A;  1KBS A;  1RL5 A;  1CDS A;  1JGK A;  1LX5 B;  2H8U A;  2MJ4 A;  1ZAD A;  1ONJ A;  2UWR A;  5DO6 A;  1IK8 A;  2CRT A;  3EVS C;  2H7Z B;  1CVO A;  5EBX A;  3BT1 U;  1KC4 A;  1FFJ A;  3EBX A;  2H64 B;  2H64 C;  1IKC A;  1CRF A;  3U74 U;  1ES7 B;  1G6M A;  2NBT A;  5IMY C;  2H5F A;  2BTX A;  4BIK B;  2ABX A;  1RGJ A;  1FRA A;  2MUO A;  1L4W A;  2H62 D;  1LXH A;  1TXB A;  1NYS A;  2X8B B;  3BT2 U;  2CTX A;  2QJA C;  1KU6 B;  4UY2 C;  1QM7 A;  1BXP A;  1KL8 A;  1NEA A;  2MUP A;  3QB4 B;  2LCR A;  1MR6 A;  1ERA A;  2VLW A;  1F94 A;  6EBX A;  1NTX A;  1HOY A;  4QTI U;  2JVE A;  3VTS A;  1TFS A;  1H0J A;  2JQP A;  3U73 U;  2FD6 U;  1QKE A;  1CCQ A;  1TGX A;  1ABT A;  4FAO E;  1FSS B;  4P7U A;  1REW C;  2BHI A;  4LFT A;  4RUD A;  2ERA A;  1CHV S;  3FEV A;  2N99 A;  1VB0 A;  2K3G A;  4EY8 B;  1CB9 A;  3HH7 A;  5DZ5 A;  3LAQ U;  3NH7 A;  1LJZ A;  1HAJ A;  1S4Y A;  1FAS A;  1IDG A;  2QC1 A;  1IJC A;  2J8B A;  1XT3 A;  2L03 A;  1CXN A;  1B41 B;  1FF4 A;  1V6P A;  1NTN A;  4XJJ A;  1CXO A;  4FAO C;  1W6B A;  4AEA A;  1IDI A;  1KBT A;  2UX2 A;  2HLR A;  1KFH A;  4DO8 A;  1IDH A;  1UG4 A;  3NEQ A;  1LSI A;  2MFA A;  1IDL A;  4OM5 A;  2CDX A;  1CDR A;  1KTZ B;  1F8U B;  4OM4 A;  5IMT D;  1COE A;  3KFD E;  3KFD I;  1NOR A;  2QJ9 C;  1NYU A;  1PLO A;  4KSN A;  2GOO B;  1YWH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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