1CBNA

Atomic resolution (0.83 angstroms) crystal structure of the hydrophobic protein crambin at 130 k
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
46
structure length
46
Chain Sequence
TTCCPSIVARSNFNVCRLPGTSEAICATYTGCIIIPGATCPGDYAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant seed protein
molecule keywords CRAMBIN
publication title Atomic resolution (0.83 A) crystal structure of the hydrophobic protein crambin at 130 K.
pubmed doi rcsb
source organism Crambe hispanica subsp. abyssinica
total genus 16
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 1991-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1cbnA00
1JMNA 1CCNA 3C8PA 1ORLA 3NIRA 3UE7B 3U7TA 1JXWA 1CBNA 4FC1A 2FD9A 1CXRA 2EYDA 2EYBA 1JXYA 1CRNA 2EYCA 1AB1A 3SZSA 1BHPA 1JXXA 1NBLA 1CCMA 2PLHA 1JXUA 1CNRA 2V9BA 1JXTA 1YV8A 1EJGA 1YVAA 1JMPA 2FD7A 2EYAA 1OKHA 1WUWA 1ED0A
chains in the Genus database with same CATH superfamily
1JMNA 1CCNA 3C8PA 1ORLA 3NIRA 3UE7B 3U7TA 1JXWA 1CBNA 4FC1A 2FD9A 1CXRA 2EYDA 2EYBA 1JXYA 1CRNA 2EYCA 1JNBA 1AB1A 3SZSA 1BHPA 1JXXA 1NBLA 1CCMA 1H5WA 2PLHA 1JXUA 1CNRA 2V9BA 1JXTA 1YV8A 1EJGA 1FOUA 1YVAA 1JMPA 1IJGA 2FD7A 2EYAA 1OKHA 1WUWA 1ED0A
chains in the Genus database with same CATH topology
1JMNA 1CCNA 3C8PA 1ORLA 3NIRA 3UE7B 3U7TA 1JXWA 1CBNA 4FC1A 2FD9A 1CXRA 2EYDA 2EYBA 1JXYA 1CRNA 2EYCA 1AB1A 3SZSA 1BHPA 1JXXA 1NBLA 1CCMA 2PLHA 1JXUA 1CNRA 2V9BA 1JXTA 1YV8A 1EJGA 1YVAA 1JMPA 2FD7A 2EYAA 1OKHA 1WUWA 1ED0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JMN A;  1CCN A;  3C8P A;  1ORL A;  3NIR A;  3UE7 B;  3U7T A;  1JXW A;  1CBN A;  4FC1 A;  2FD9 A;  1CXR A;  2EYD A;  2EYB A;  1JXY A;  1CRN A;  2EYC A;  1AB1 A;  3SZS A;  1BHP A;  1JXX A;  1NBL A;  1CCM A;  2PLH A;  1JXU A;  1CNR A;  2V9B A;  1JXT A;  1YV8 A;  1EJG A;  1YVA A;  1JMP A;  2FD7 A;  2EYA A;  1OKH A;  1WUW A;  1ED0 A; 
#chains in the Genus database with same CATH topology
 1JMN A;  1CCN A;  3C8P A;  1ORL A;  3NIR A;  3UE7 B;  3U7T A;  1JXW A;  1CBN A;  4FC1 A;  2FD9 A;  1CXR A;  2EYD A;  2EYB A;  1JXY A;  1CRN A;  2EYC A;  1JNB A;  1AB1 A;  3SZS A;  1BHP A;  1JXX A;  1NBL A;  1CCM A;  1H5W A;  2PLH A;  1JXU A;  1CNR A;  2V9B A;  1JXT A;  1YV8 A;  1EJG A;  1FOU A;  1YVA A;  1JMP A;  1IJG A;  2FD7 A;  2EYA A;  1OKH A;  1WUW A;  1ED0 A; 
#chains in the Genus database with same CATH homology
 1JMN A;  1CCN A;  3C8P A;  1ORL A;  3NIR A;  3UE7 B;  3U7T A;  1JXW A;  1CBN A;  4FC1 A;  2FD9 A;  1CXR A;  2EYD A;  2EYB A;  1JXY A;  1CRN A;  2EYC A;  1AB1 A;  3SZS A;  1BHP A;  1JXX A;  1NBL A;  1CCM A;  2PLH A;  1JXU A;  1CNR A;  2V9B A;  1JXT A;  1YV8 A;  1EJG A;  1YVA A;  1JMP A;  2FD7 A;  2EYA A;  1OKH A;  1WUW A;  1ED0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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