1CCMA

Direct noe refinement of crambin from 2d nmr data using a slow-cooling annealing protocol
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
46
structure length
46
Chain Sequence
TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant seed protein
molecule keywords CRAMBIN
publication title "Ensemble" iterative relaxation matrix approach: a new NMR refinement protocol applied to the solution structure of crambin.
pubmed doi rcsb
source organism Crambe hispanica subsp. abyssinica
total genus 14
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 1993-04-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1ccmA00
1JMPA 2V9BA 1JXWA 1NBLA 2FD7A 3U7TA 1JXUA 1JXYA 3UE7B 1BHPA 1AB1A 3SZSA 1CXRA 2EYDA 2EYAA 2FD9A 1ED0A 1CRNA 1WUWA 2EYBA 1EJGA 3C8PA 1CBNA 2PLHA 1CNRA 4FC1A 1CCNA 1YVAA 1JXTA 1YV8A 1CCMA 1OKHA 1ORLA 3NIRA 1JXXA 1JMNA 2EYCA
chains in the Genus database with same CATH superfamily
1H5WA 1JMPA 2V9BA 1FOUA 1JXWA 1NBLA 2FD7A 3U7TA 1JXUA 1JXYA 3UE7B 1BHPA 1AB1A 3SZSA 1CXRA 2EYDA 2EYAA 2FD9A 1ED0A 1CRNA 1WUWA 2EYBA 1EJGA 3C8PA 1CBNA 1JNBA 2PLHA 1CNRA 4FC1A 1CCNA 1YVAA 1JXTA 1YV8A 1CCMA 1OKHA 1IJGA 1ORLA 3NIRA 1JXXA 1JMNA 2EYCA
chains in the Genus database with same CATH topology
1JMPA 2V9BA 1JXWA 1NBLA 2FD7A 3U7TA 1JXUA 1JXYA 3UE7B 1BHPA 1AB1A 3SZSA 1CXRA 2EYDA 2EYAA 2FD9A 1ED0A 1CRNA 1WUWA 2EYBA 1EJGA 3C8PA 1CBNA 2PLHA 1CNRA 4FC1A 1CCNA 1YVAA 1JXTA 1YV8A 1CCMA 1OKHA 1ORLA 3NIRA 1JXXA 1JMNA 2EYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JMP A;  2V9B A;  1JXW A;  1NBL A;  2FD7 A;  3U7T A;  1JXU A;  1JXY A;  3UE7 B;  1BHP A;  1AB1 A;  3SZS A;  1CXR A;  2EYD A;  2EYA A;  2FD9 A;  1ED0 A;  1CRN A;  1WUW A;  2EYB A;  1EJG A;  3C8P A;  1CBN A;  2PLH A;  1CNR A;  4FC1 A;  1CCN A;  1YVA A;  1JXT A;  1YV8 A;  1CCM A;  1OKH A;  1ORL A;  3NIR A;  1JXX A;  1JMN A;  2EYC A; 
#chains in the Genus database with same CATH topology
 1H5W A;  1JMP A;  2V9B A;  1FOU A;  1JXW A;  1NBL A;  2FD7 A;  3U7T A;  1JXU A;  1JXY A;  3UE7 B;  1BHP A;  1AB1 A;  3SZS A;  1CXR A;  2EYD A;  2EYA A;  2FD9 A;  1ED0 A;  1CRN A;  1WUW A;  2EYB A;  1EJG A;  3C8P A;  1CBN A;  1JNB A;  2PLH A;  1CNR A;  4FC1 A;  1CCN A;  1YVA A;  1JXT A;  1YV8 A;  1CCM A;  1OKH A;  1IJG A;  1ORL A;  3NIR A;  1JXX A;  1JMN A;  2EYC A; 
#chains in the Genus database with same CATH homology
 1JMP A;  2V9B A;  1JXW A;  1NBL A;  2FD7 A;  3U7T A;  1JXU A;  1JXY A;  3UE7 B;  1BHP A;  1AB1 A;  3SZS A;  1CXR A;  2EYD A;  2EYA A;  2FD9 A;  1ED0 A;  1CRN A;  1WUW A;  2EYB A;  1EJG A;  3C8P A;  1CBN A;  2PLH A;  1CNR A;  4FC1 A;  1CCN A;  1YVA A;  1JXT A;  1YV8 A;  1CCM A;  1OKH A;  1ORL A;  3NIR A;  1JXX A;  1JMN A;  2EYC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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