1CDTA

Cardiotoxin v4/ii from naja mossambica mossambica: the refined crystal structure
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
60
structure length
60
Chain Sequence
LKCNKLIPIAYKTCPEGKNLCYKMMLASKKMVPVKRGCINVCPKNSALVKYVCCSTDRCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Cardiotoxin VII4 from Naja mossambica mossambica. The refined crystal structure.
pubmed doi rcsb
molecule tags Cytotoxin
source organism Naja mossambica
molecule keywords CARDIOTOXIN VII4
total genus 12
structure length 60
sequence length 60
chains with identical sequence B
ec nomenclature
pdb deposition date 1990-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1cdtA00
1ZADA 1CHVS 1CTXA 1ONJA 2CRSA 5DO6A 2GOOC 1IKCA 2JVEA 2PJYB 3ERAA 3NH7A 2J8BA 3NDSA 1KBSA 2UX2A 1LJZA 1CODA 4AEAA 1NTNA 1CCQA 1KFHA 2H5FA 3NEQA 2OFSA 1IDGA 2L03A 1TGXA 4DO8A 2CDXA 4OM5A 1CVOA 2MHYA 4LFTA 1CRFA 2MJYA 2ERAA 1IQ9A 2H64B 2NBTA 1IJCA 1NYUA 4RUDA 1BXPA 1S4YA 1HC9A 1IDLA 3HH7A 1KS6A 1NYSA 1V6PA 4XJJA 2N99A 5EBXA 1ES7B 4FAOE 2L5SA 2UWRA 1I02A 3FEVA 1LX5B 5DU1A 2GOOB 2H8UA 1LXGA 2MUPA 1KL8A 1MAHF 1NEAA 1TXAA 2ABXA 2CRTA 2BHIA 1LSIA 2QJ9C 1YWHA 2K3GA 1RL5A 2MUOA 4HQPF 1F94A 1KTZB 3PLCA 1LXHA 1NTXA 2QC1A 3BT2U 1F8UB 1HAAA 1HC9B 3VTSA 5IMYC 1UG4A 1FSSB 2LA1A 4IYEA 1CREA 1KBTA 1IDIA 1CDTA 1TXBA 1QM7A 3EVSC 2H62D 1NXBA 1PLOA 5IMTD 2JQPA 1VB0A 3BT1U 1CXNA 2X8BB 2CTXA 1IDHA 5DZ5A 1L4WA 3KFDI 1MR6A 4BIKB 1KC4A 2H62C 4OM4A 3U74U 1CDQA 6EBXA 1FF4A 3EBXA 1JE9A 2PJYC 1FFJA 1ABTA 2MJ0A 4FAOC 1G6MA 1ERGA 1XT3A 1HAJA 1ERAA 4EY8B 1JBDA 1B41B 1HOYA 1CB9A 3QB4B 2CCXA 1KU6B 1KBAA 2LCRA 2H7ZA 4UY2C 1COEA 1JGKA 1NORA 1CDSA 1FRAA 1H0JA 4ZQYA 1CXOA 2QJBC 1FSCA 1DRSA 2MFAA 1IK8A 1RGJA 1TFSA 1KXIA 2MJ4A 2QJAC 2HLRA 1CDRA 1QKDA 1W6BA 2FD6U 2H64C 4P7UA 1BTEA 2VLWA 2H7ZB 1QKEA 2I9BE 1FASA 3LAQU 4QTIU 1REWC 3KFDE 2HLQA 3U73U 1M9ZA 2BTXA 4BDTB
chains in the Genus database with same CATH superfamily
1ZADA 1CHVS 1CTXA 1ONJA 2CRSA 5DO6A 2GOOC 1IKCA 2JVEA 2PJYB 3ERAA 3NH7A 2J8BA 3NDSA 1KBSA 2UX2A 1LJZA 1CODA 4AEAA 1NTNA 1CCQA 1KFHA 2H5FA 3NEQA 2OFSA 1IDGA 2L03A 1TGXA 4DO8A 2CDXA 4OM5A 1CVOA 2MHYA 4LFTA 1CRFA 2MJYA 2ERAA 1IQ9A 2H64B 2NBTA 1IJCA 1NYUA 4RUDA 1BXPA 1S4YA 1HC9A 1IDLA 3HH7A 1KS6A 1NYSA 1V6PA 4XJJA 2N99A 5EBXA 1ES7B 4FAOE 2L5SA 2UWRA 1I02A 3FEVA 1LX5B 5DU1A 2GOOB 2H8UA 1LXGA 2MUPA 1KL8A 1MAHF 1NEAA 1TXAA 2ABXA 2CRTA 2BHIA 1LSIA 2QJ9C 1YWHA 2K3GA 1RL5A 2MUOA 4HQPF 1F94A 1KTZB 3PLCA 1LXHA 1NTXA 2QC1A 3BT2U 1F8UB 1HAAA 1HC9B 3VTSA 5IMYC 1UG4A 1FSSB 2LA1A 4IYEA 1CREA 1KBTA 1IDIA 1CDTA 1TXBA 1QM7A 3EVSC 2H62D 1NXBA 1PLOA 5IMTD 2JQPA 1VB0A 3BT1U 1CXNA 2X8BB 2CTXA 1IDHA 5DZ5A 1L4WA 3KFDI 1MR6A 4BIKB 1KC4A 2H62C 4OM4A 3U74U 1CDQA 6EBXA 1FF4A 3EBXA 1JE9A 2PJYC 1FFJA 1ABTA 2MJ0A 4FAOC 1G6MA 1ERGA 1XT3A 1HAJA 1ERAA 4EY8B 1JBDA 4KSNA 1B41B 1HOYA 1CB9A 3QB4B 2CCXA 1KU6B 1KBAA 2LCRA 2H7ZA 4UY2C 1COEA 1JGKA 1NORA 1CDSA 1FRAA 1H0JA 4ZQYA 1CXOA 2QJBC 1FSCA 1DRSA 2MFAA 1IK8A 1RGJA 1TFSA 1KXIA 2MJ4A 2QJAC 2HLRA 1CDRA 1QKDA 1W6BA 2FD6U 2H64C 4P7UA 1BTEA 2VLWA 2H7ZB 1QKEA 2I9BE 1FASA 3LAQU 4QTIU 1REWC 3KFDE 2HLQA 3U73U 1M9ZA 2BTXA 4BDTB
chains in the Genus database with same CATH topology
1ZADA 1CHVS 1CTXA 1ONJA 2CRSA 5DO6A 2GOOC 1IKCA 2JVEA 2PJYB 3ERAA 3NH7A 2J8BA 3NDSA 1KBSA 2UX2A 1LJZA 1CODA 4AEAA 1NTNA 1CCQA 1KFHA 2H5FA 3NEQA 2OFSA 1IDGA 2L03A 1TGXA 4DO8A 2CDXA 4OM5A 1CVOA 2MHYA 4LFTA 1CRFA 2MJYA 2ERAA 1IQ9A 2H64B 2NBTA 1IJCA 1NYUA 4RUDA 1BXPA 1S4YA 1HC9A 1IDLA 3HH7A 1KS6A 1NYSA 1V6PA 4XJJA 2N99A 5EBXA 1ES7B 4FAOE 2L5SA 2UWRA 1I02A 3FEVA 1LX5B 5DU1A 2GOOB 2H8UA 1LXGA 2MUPA 1KL8A 1MAHF 1NEAA 1TXAA 2ABXA 2CRTA 2BHIA 1LSIA 2QJ9C 1YWHA 2K3GA 1RL5A 2MUOA 4HQPF 1F94A 1KTZB 3PLCA 1LXHA 1NTXA 2QC1A 3BT2U 1F8UB 1HAAA 1HC9B 3VTSA 5IMYC 1UG4A 1FSSB 2LA1A 4IYEA 1CREA 1KBTA 1IDIA 1CDTA 1TXBA 1QM7A 3EVSC 2H62D 1NXBA 1PLOA 5IMTD 2JQPA 1VB0A 3BT1U 1CXNA 2X8BB 2CTXA 1IDHA 5DZ5A 1L4WA 3KFDI 1MR6A 4BIKB 1KC4A 2H62C 4OM4A 3U74U 1CDQA 6EBXA 1FF4A 3EBXA 1JE9A 2PJYC 1FFJA 1ABTA 2MJ0A 4FAOC 1G6MA 1ERGA 1XT3A 1HAJA 1ERAA 4EY8B 1JBDA 4KSNA 1B41B 1HOYA 1CB9A 3QB4B 2CCXA 1KU6B 1KBAA 2LCRA 2H7ZA 4UY2C 1COEA 1JGKA 1NORA 1CDSA 1FRAA 1H0JA 4ZQYA 1CXOA 2QJBC 1FSCA 1DRSA 2MFAA 1IK8A 1RGJA 1TFSA 1KXIA 2MJ4A 2QJAC 2HLRA 1CDRA 1QKDA 1W6BA 2FD6U 2H64C 4P7UA 1BTEA 2VLWA 2H7ZB 1QKEA 2I9BE 1FASA 3LAQU 4QTIU 1REWC 3KFDE 2HLQA 3U73U 1M9ZA 2BTXA 4BDTB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZAD A;  1CHV S;  1CTX A;  1ONJ A;  2CRS A;  5DO6 A;  2GOO C;  1IKC A;  2JVE A;  2PJY B;  3ERA A;  3NH7 A;  2J8B A;  3NDS A;  1KBS A;  2UX2 A;  1LJZ A;  1COD A;  4AEA A;  1NTN A;  1CCQ A;  1KFH A;  2H5F A;  3NEQ A;  2OFS A;  1IDG A;  2L03 A;  1TGX A;  4DO8 A;  2CDX A;  4OM5 A;  1CVO A;  2MHY A;  4LFT A;  1CRF A;  2MJY A;  2ERA A;  1IQ9 A;  2H64 B;  2NBT A;  1IJC A;  1NYU A;  4RUD A;  1BXP A;  1S4Y A;  1HC9 A;  1IDL A;  3HH7 A;  1KS6 A;  1NYS A;  1V6P A;  4XJJ A;  2N99 A;  5EBX A;  1ES7 B;  4FAO E;  2L5S A;  2UWR A;  1I02 A;  3FEV A;  1LX5 B;  5DU1 A;  2GOO B;  2H8U A;  1LXG A;  2MUP A;  1KL8 A;  1MAH F;  1NEA A;  1TXA A;  2ABX A;  2CRT A;  2BHI A;  1LSI A;  2QJ9 C;  1YWH A;  2K3G A;  1RL5 A;  2MUO A;  4HQP F;  1F94 A;  1KTZ B;  3PLC A;  1LXH A;  1NTX A;  2QC1 A;  3BT2 U;  1F8U B;  1HAA A;  1HC9 B;  3VTS A;  5IMY C;  1UG4 A;  1FSS B;  2LA1 A;  4IYE A;  1CRE A;  1KBT A;  1IDI A;  1CDT A;  1TXB A;  1QM7 A;  3EVS C;  2H62 D;  1NXB A;  1PLO A;  5IMT D;  2JQP A;  1VB0 A;  3BT1 U;  1CXN A;  2X8B B;  2CTX A;  1IDH A;  5DZ5 A;  1L4W A;  3KFD I;  1MR6 A;  4BIK B;  1KC4 A;  2H62 C;  4OM4 A;  3U74 U;  1CDQ A;  6EBX A;  1FF4 A;  3EBX A;  1JE9 A;  2PJY C;  1FFJ A;  1ABT A;  2MJ0 A;  4FAO C;  1G6M A;  1ERG A;  1XT3 A;  1HAJ A;  1ERA A;  4EY8 B;  1JBD A;  1B41 B;  1HOY A;  1CB9 A;  3QB4 B;  2CCX A;  1KU6 B;  1KBA A;  2LCR A;  2H7Z A;  4UY2 C;  1COE A;  1JGK A;  1NOR A;  1CDS A;  1FRA A;  1H0J A;  4ZQY A;  1CXO A;  2QJB C;  1FSC A;  1DRS A;  2MFA A;  1IK8 A;  1RGJ A;  1TFS A;  1KXI A;  2MJ4 A;  2QJA C;  2HLR A;  1CDR A;  1QKD A;  1W6B A;  2FD6 U;  2H64 C;  4P7U A;  1BTE A;  2VLW A;  2H7Z B;  1QKE A;  2I9B E;  1FAS A;  3LAQ U;  4QTI U;  1REW C;  3KFD E;  2HLQ A;  3U73 U;  1M9Z A;  2BTX A;  4BDT B; 
#chains in the Genus database with same CATH topology
 1ZAD A;  1CHV S;  1CTX A;  1ONJ A;  2CRS A;  5DO6 A;  2GOO C;  1IKC A;  2JVE A;  2PJY B;  3ERA A;  3NH7 A;  2J8B A;  3NDS A;  1KBS A;  2UX2 A;  1LJZ A;  1COD A;  4AEA A;  1NTN A;  1CCQ A;  1KFH A;  2H5F A;  3NEQ A;  2OFS A;  1IDG A;  2L03 A;  1TGX A;  4DO8 A;  2CDX A;  4OM5 A;  1CVO A;  2MHY A;  4LFT A;  1CRF A;  2MJY A;  2ERA A;  1IQ9 A;  2H64 B;  2NBT A;  1IJC A;  1NYU A;  4RUD A;  1BXP A;  1S4Y A;  1HC9 A;  1IDL A;  3HH7 A;  1KS6 A;  1NYS A;  1V6P A;  4XJJ A;  2N99 A;  5EBX A;  1ES7 B;  4FAO E;  2L5S A;  2UWR A;  1I02 A;  3FEV A;  1LX5 B;  5DU1 A;  2GOO B;  2H8U A;  1LXG A;  2MUP A;  1KL8 A;  1MAH F;  1NEA A;  1TXA A;  2ABX A;  2CRT A;  2BHI A;  1LSI A;  2QJ9 C;  1YWH A;  2K3G A;  1RL5 A;  2MUO A;  4HQP F;  1F94 A;  1KTZ B;  3PLC A;  1LXH A;  1NTX A;  2QC1 A;  3BT2 U;  1F8U B;  1HAA A;  1HC9 B;  3VTS A;  5IMY C;  1UG4 A;  1FSS B;  2LA1 A;  4IYE A;  1CRE A;  1KBT A;  1IDI A;  1CDT A;  1TXB A;  1QM7 A;  3EVS C;  2H62 D;  1NXB A;  1PLO A;  5IMT D;  2JQP A;  1VB0 A;  3BT1 U;  1CXN A;  2X8B B;  2CTX A;  1IDH A;  5DZ5 A;  1L4W A;  3KFD I;  1MR6 A;  4BIK B;  1KC4 A;  2H62 C;  4OM4 A;  3U74 U;  1CDQ A;  6EBX A;  1FF4 A;  3EBX A;  1JE9 A;  2PJY C;  1FFJ A;  1ABT A;  2MJ0 A;  4FAO C;  1G6M A;  1ERG A;  1XT3 A;  1HAJ A;  1ERA A;  4EY8 B;  1JBD A;  4KSN A;  1B41 B;  1HOY A;  1CB9 A;  3QB4 B;  2CCX A;  1KU6 B;  1KBA A;  2LCR A;  2H7Z A;  4UY2 C;  1COE A;  1JGK A;  1NOR A;  1CDS A;  1FRA A;  1H0J A;  4ZQY A;  1CXO A;  2QJB C;  1FSC A;  1DRS A;  2MFA A;  1IK8 A;  1RGJ A;  1TFS A;  1KXI A;  2MJ4 A;  2QJA C;  2HLR A;  1CDR A;  1QKD A;  1W6B A;  2FD6 U;  2H64 C;  4P7U A;  1BTE A;  2VLW A;  2H7Z B;  1QKE A;  2I9B E;  1FAS A;  3LAQ U;  4QTI U;  1REW C;  3KFD E;  2HLQ A;  3U73 U;  1M9Z A;  2BTX A;  4BDT B; 
#chains in the Genus database with same CATH homology
 1ZAD A;  1CHV S;  1CTX A;  1ONJ A;  2CRS A;  5DO6 A;  2GOO C;  1IKC A;  2JVE A;  2PJY B;  3ERA A;  3NH7 A;  2J8B A;  3NDS A;  1KBS A;  2UX2 A;  1LJZ A;  1COD A;  4AEA A;  1NTN A;  1CCQ A;  1KFH A;  2H5F A;  3NEQ A;  2OFS A;  1IDG A;  2L03 A;  1TGX A;  4DO8 A;  2CDX A;  4OM5 A;  1CVO A;  2MHY A;  4LFT A;  1CRF A;  2MJY A;  2ERA A;  1IQ9 A;  2H64 B;  2NBT A;  1IJC A;  1NYU A;  4RUD A;  1BXP A;  1S4Y A;  1HC9 A;  1IDL A;  3HH7 A;  1KS6 A;  1NYS A;  1V6P A;  4XJJ A;  2N99 A;  5EBX A;  1ES7 B;  4FAO E;  2L5S A;  2UWR A;  1I02 A;  3FEV A;  1LX5 B;  5DU1 A;  2GOO B;  2H8U A;  1LXG A;  2MUP A;  1KL8 A;  1MAH F;  1NEA A;  1TXA A;  2ABX A;  2CRT A;  2BHI A;  1LSI A;  2QJ9 C;  1YWH A;  2K3G A;  1RL5 A;  2MUO A;  4HQP F;  1F94 A;  1KTZ B;  3PLC A;  1LXH A;  1NTX A;  2QC1 A;  3BT2 U;  1F8U B;  1HAA A;  1HC9 B;  3VTS A;  5IMY C;  1UG4 A;  1FSS B;  2LA1 A;  4IYE A;  1CRE A;  1KBT A;  1IDI A;  1CDT A;  1TXB A;  1QM7 A;  3EVS C;  2H62 D;  1NXB A;  1PLO A;  5IMT D;  2JQP A;  1VB0 A;  3BT1 U;  1CXN A;  2X8B B;  2CTX A;  1IDH A;  5DZ5 A;  1L4W A;  3KFD I;  1MR6 A;  4BIK B;  1KC4 A;  2H62 C;  4OM4 A;  3U74 U;  1CDQ A;  6EBX A;  1FF4 A;  3EBX A;  1JE9 A;  2PJY C;  1FFJ A;  1ABT A;  2MJ0 A;  4FAO C;  1G6M A;  1ERG A;  1XT3 A;  1HAJ A;  1ERA A;  4EY8 B;  1JBD A;  4KSN A;  1B41 B;  1HOY A;  1CB9 A;  3QB4 B;  2CCX A;  1KU6 B;  1KBA A;  2LCR A;  2H7Z A;  4UY2 C;  1COE A;  1JGK A;  1NOR A;  1CDS A;  1FRA A;  1H0J A;  4ZQY A;  1CXO A;  2QJB C;  1FSC A;  1DRS A;  2MFA A;  1IK8 A;  1RGJ A;  1TFS A;  1KXI A;  2MJ4 A;  2QJA C;  2HLR A;  1CDR A;  1QKD A;  1W6B A;  2FD6 U;  2H64 C;  4P7U A;  1BTE A;  2VLW A;  2H7Z B;  1QKE A;  2I9B E;  1FAS A;  3LAQ U;  4QTI U;  1REW C;  3KFD E;  2HLQ A;  3U73 U;  1M9Z A;  2BTX A;  4BDT B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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