1CFEA

P14a, nmr, 20 structures
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
135
structure length
135
Chain Sequence
QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGGDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Pathogenesis-related protein
molecule keywords PATHOGENESIS-RELATED PROTEIN P14A
publication title NMR solution structure of the pathogenesis-related protein P14a.
pubmed doi rcsb
source organism Solanum lycopersicum
total genus 35
structure length 135
sequence length 135
ec nomenclature
pdb deposition date 1996-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 1cfeA00
4H0AA 3U3UC 4D53A 4TPVA 3U3NC 4NUOA 1RC9A 1XTAA 4NUNA 4G2UA 4AIWA 4NUIA 4IFAA 1QNXA 2VZNA 3MZ8A 3S6SA 4LY5A 3Q2UA 3S6UA 3S6VA 1U53A 4P27A 5ETEA 1WVRA 1XX5A 2GIZA 2DDAA 3NT8A 5JYSA 1SMBA 3Q2RA 4NUKA 3U3LC 2DDBA 2EPFA 1CFEA
chains in the Genus database with same CATH superfamily
4H0AA 3U3UC 4D53A 4TPVA 3U3NC 4NUOA 1RC9A 1XTAA 4NUNA 4G2UA 4AIWA 4NUIA 4IFAA 1QNXA 2VZNA 3MZ8A 3S6SA 4LY5A 3Q2UA 3S6UA 3S6VA 1U53A 4P27A 5ETEA 1WVRA 1XX5A 2GIZA 2DDAA 3NT8A 5JYSA 1SMBA 3Q2RA 4NUKA 3U3LC 2DDBA 2EPFA 1CFEA
chains in the Genus database with same CATH topology
4H0AA 3U3UC 4D53A 4TPVA 3U3NC 4NUOA 1RC9A 1XTAA 4NUNA 4G2UA 4AIWA 4NUIA 4IFAA 1QNXA 2VZNA 3MZ8A 3S6SA 4LY5A 3Q2UA 3S6UA 3S6VA 1U53A 4P27A 5ETEA 1WVRA 1XX5A 2GIZA 2DDAA 3NT8A 5JYSA 1SMBA 3Q2RA 4NUKA 3U3LC 2DDBA 2EPFA 1CFEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H0A A;  3U3U C;  4D53 A;  4TPV A;  3U3N C;  4NUO A;  1RC9 A;  1XTA A;  4NUN A;  4G2U A;  4AIW A;  4NUI A;  4IFA A;  1QNX A;  2VZN A;  3MZ8 A;  3S6S A;  4LY5 A;  3Q2U A;  3S6U A;  3S6V A;  1U53 A;  4P27 A;  5ETE A;  1WVR A;  1XX5 A;  2GIZ A;  2DDA A;  3NT8 A;  5JYS A;  1SMB A;  3Q2R A;  4NUK A;  3U3L C;  2DDB A;  2EPF A;  1CFE A; 
#chains in the Genus database with same CATH topology
 4H0A A;  3U3U C;  4D53 A;  4TPV A;  3U3N C;  4NUO A;  1RC9 A;  1XTA A;  4NUN A;  4G2U A;  4AIW A;  4NUI A;  4IFA A;  1QNX A;  2VZN A;  3MZ8 A;  3S6S A;  4LY5 A;  3Q2U A;  3S6U A;  3S6V A;  1U53 A;  4P27 A;  5ETE A;  1WVR A;  1XX5 A;  2GIZ A;  2DDA A;  3NT8 A;  5JYS A;  1SMB A;  3Q2R A;  4NUK A;  3U3L C;  2DDB A;  2EPF A;  1CFE A; 
#chains in the Genus database with same CATH homology
 4H0A A;  3U3U C;  4D53 A;  4TPV A;  3U3N C;  4NUO A;  1RC9 A;  1XTA A;  4NUN A;  4G2U A;  4AIW A;  4NUI A;  4IFA A;  1QNX A;  2VZN A;  3MZ8 A;  3S6S A;  4LY5 A;  3Q2U A;  3S6U A;  3S6V A;  1U53 A;  4P27 A;  5ETE A;  1WVR A;  1XX5 A;  2GIZ A;  2DDA A;  3NT8 A;  5JYS A;  1SMB A;  3Q2R A;  4NUK A;  3U3L C;  2DDB A;  2EPF A;  1CFE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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