The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
99
|
sequence length |
342
|
structure length |
327
|
Chain Sequence |
AGALWEIEKELFTKLPAPSSAINSHLQPAKPFKVDLSTAVSYNDIGDINWKNLQQFKGIERSEKGTEGLFFVETESGVFIVKRSTNIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKSTMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGATVVPIDSKIIPLDASHPHGERVRELLRTLIAHPGHESSQFHSIRDIITLYTGYDVGTEGSISMQEGFLATVRECASFDLDAFERELLSWQESLQKCHNLSISPQAIPFILRMLRIFH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of the Physarum polycephalum actin-fragmin kinase: an atypical protein kinase with a specialized substrate-binding domain.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Physarum polycephalum
|
| molecule keywords |
PROTEIN (ACTIN-FRAGMIN KINASE)
|
| total genus |
99
|
| structure length |
327
|
| sequence length |
342
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.7.11.1: Non-specific serine/threonine protein kinase. |
| pdb deposition date | 1999-04-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09192 | Act-Frag_cataly | Actin-fragmin kinase, catalytic |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 | Phosphatidylinositol 3-/4-kinase, catalytic domain | ||
| Alpha Beta | 2-Layer Sandwich | Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 | Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 |
#chains in the Genus database with same CATH superfamily 4HLE A; 4PH4 B; 3QAR A; 4FA6 A; 3IHY A; 3ML9 A; 4EZJ A; 4A55 A; 2X6F A; 4DK5 A; 4JPS A; 3R7Q A; 4FJY A; 4UWL A; 4BFR A; 3ZIM A; 4FJZ A; 3HHM A; 4WWO A; 2WXQ A; 4ANW A; 3LJ3 A; 3APC A; 2X6I A; 2WXL A; 3ENE A; 2WXM A; 4F1S A; 2WXF A; 2WXO A; 4TUU A; 3ML8 A; 2A4Z A; 5G2N A; 5JHB A; 4WWP A; 3NZS A; 2CHX A; 2WXR A; 4FHJ A; 2X6K A; 3R7R A; 3CSF A; 5JHA A; 3PRZ A; 4UWH A; 4WAF A; 3L13 A; 2X38 A; 1E7U A; 2WXJ A; 1E8Y A; 2WXN A; 3QK0 A; 3TL5 A; 2WXK A; 4OVV A; 4EZL A; 4TV3 A; 2WXG A; 3APD A; 4UWG A; 5G55 A; 5T8I A; 3SD5 A; 3L08 A; 4PS8 A; 4OYS A; 4ANX A; 5ANL A; 4J6I A; 4XX5 A; 3OAW A; 2CHZ A; 3LS8 A; 3CST A; 3IBE A; 4WWN A; 4EZK A; 4L2Y A; 3T8M A; 4KZC A; 4FUL A; 2V4L A; 3DBS A; 2Y3A A; 3L54 A; 4ANV A; 3HIZ A; 3S2A A; 3ZW3 A; 4URK A; 4AOF A; 2RD0 A; 3L17 A; 4FAD A; 3L16 A; 3PRE A; 4UWF A; 4FLH A; 4OVU A; 4KZ0 A; 3MJW A; 3PS6 A; 1E8X A; 4GB9 A; 1E90 A; 3DPD A; 4G11 A; 2WXP A; 3QJZ A; 4L23 A; 5ENN A; 5EDS A; 1HE8 A; 4ANU A; 3NZU A; 4XE0 A; 4AJW A; 1CJA A; 3QAQ A; 1E7V A; 3APF A; 2WXH A; 4PS3 A; 3TJP A; 4PS7 A; 3P2B A; 4FHK A; 2X6J A; 2CHW A; 2A5U A; 3ZVV A; 2WXI A; 1E8Z A; 4XZ4 A; 4UWK A; 4L1B A; 4HVB A; 2X6H A; 1E8W A; #chains in the Genus database with same CATH topology 4HLE A; 4PH4 B; 3QAR A; 4FA6 A; 3IHY A; 3ML9 A; 4EZJ A; 4A55 A; 2X6F A; 4DK5 A; 4JPS A; 3R7Q A; 4FJY A; 4UWL A; 4BFR A; 3ZIM A; 4FJZ A; 3HHM A; 4WWO A; 2WXQ A; 4ANW A; 3LJ3 A; 3APC A; 2X6I A; 2WXL A; 3ENE A; 2WXM A; 4F1S A; 2WXF A; 2WXO A; 4TUU A; 3ML8 A; 2A4Z A; 5G2N A; 5JHB A; 4WWP A; 3NZS A; 2CHX A; 2WXR A; 4FHJ A; 2X6K A; 3R7R A; 3CSF A; 5JHA A; 3PRZ A; 4UWH A; 4WAF A; 3L13 A; 2X38 A; 1E7U A; 2WXJ A; 1E8Y A; 2WXN A; 3QK0 A; 3TL5 A; 2WXK A; 4OVV A; 4EZL A; 4TV3 A; 2WXG A; 3APD A; 4UWG A; 5G55 A; 3AKK A; 5T8I A; 3SD5 A; 3L08 A; 4PS8 A; 4OYS A; 4ANX A; 5ANL A; 4J6I A; 4XX5 A; 3OAW A; 2CHZ A; 3LS8 A; 3CST A; 3IBE A; 4WWN A; 4EZK A; 4L2Y A; 3T8M A; 4KZC A; 4FUL A; 2V4L A; 3DBS A; 2Y3A A; 3L54 A; 4ANV A; 3HIZ A; 3S2A A; 3ZW3 A; 4URK A; 4AOF A; 2RD0 A; 3L17 A; 4FAD A; 3L16 A; 3PRE A; 4UWF A; 4FLH A; 4OVU A; 4KZ0 A; 3MJW A; 3PS6 A; 1E8X A; 4GB9 A; 1E90 A; 3DPD A; 3AKL A; 4G11 A; 2WXP A; 3QJZ A; 4L23 A; 5ENN A; 5EDS A; 1HE8 A; 4ANU A; 3NZU A; 3AKJ A; 4XE0 A; 4AJW A; 1CJA A; 3QAQ A; 1E7V A; 3APF A; 2WXH A; 4PS3 A; 3TJP A; 4PS7 A; 3P2B A; 4FHK A; 2X6J A; 2CHW A; 2A5U A; 3ZVV A; 2WXI A; 1E8Z A; 4XZ4 A; 4UWK A; 4L1B A; 4HVB A; 2X6H A; 1E8W A; #chains in the Genus database with same CATH homology 4HLE A; 4PH4 B; 3QAR A; 4FA6 A; 3IHY A; 3ML9 A; 4EZJ A; 4A55 A; 2X6F A; 4DK5 A; 4JPS A; 3R7Q A; 4FJY A; 4UWL A; 4BFR A; 3ZIM A; 4FJZ A; 3HHM A; 4WWO A; 2WXQ A; 4ANW A; 3LJ3 A; 3APC A; 2X6I A; 2WXL A; 3ENE A; 2WXM A; 4F1S A; 2WXF A; 2WXO A; 4TUU A; 3ML8 A; 2A4Z A; 5G2N A; 5JHB A; 4WWP A; 3NZS A; 2CHX A; 2WXR A; 4FHJ A; 2X6K A; 3R7R A; 3CSF A; 5JHA A; 3PRZ A; 4UWH A; 4WAF A; 3L13 A; 2X38 A; 1E7U A; 2WXJ A; 1E8Y A; 2WXN A; 3QK0 A; 3TL5 A; 2WXK A; 4OVV A; 4EZL A; 4TV3 A; 2WXG A; 3APD A; 4UWG A; 5G55 A; 5T8I A; 3SD5 A; 3L08 A; 4PS8 A; 4OYS A; 4ANX A; 5ANL A; 4J6I A; 4XX5 A; 3OAW A; 2CHZ A; 3LS8 A; 3CST A; 3IBE A; 4WWN A; 4EZK A; 4L2Y A; 3T8M A; 4KZC A; 4FUL A; 2V4L A; 3DBS A; 2Y3A A; 3L54 A; 4ANV A; 3HIZ A; 3S2A A; 3ZW3 A; 4URK A; 4AOF A; 2RD0 A; 3L17 A; 4FAD A; 3L16 A; 3PRE A; 4UWF A; 4FLH A; 4OVU A; 4KZ0 A; 3MJW A; 3PS6 A; 1E8X A; 4GB9 A; 1E90 A; 3DPD A; 4G11 A; 2WXP A; 3QJZ A; 4L23 A; 5ENN A; 5EDS A; 1HE8 A; 4ANU A; 3NZU A; 4XE0 A; 4AJW A; 1CJA A; 3QAQ A; 1E7V A; 3APF A; 2WXH A; 4PS3 A; 3TJP A; 4PS7 A; 3P2B A; 4FHK A; 2X6J A; 2CHW A; 2A5U A; 3ZVV A; 2WXI A; 1E8Z A; 4XZ4 A; 4UWK A; 4L1B A; 4HVB A; 2X6H A; 1E8W A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
