1CNUA

Phosphorylated actophorin from acantamoeba polyphaga
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
133
structure length
133
Chain Sequence
GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Contractile
molecule keywords ACTOPHORIN
publication title Interaction of actin monomers with Acanthamoeba actophorin (ADF/cofilin) and profilin.
pubmed doi rcsb
source organism Acanthamoeba polyphaga
total genus 39
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 1999-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1cnuA00
3EG9A 3Q2BA 2VACA 2FH2A 1AK7A 5KYYB 2LJ8A 5L6WC 4BEX1 1D4XG 1X67A 3A5LS 1DEJS 1SVYA 4KEDA 1RGIG 3CIPG 5KYWB 3EH2A 3EFOA 1NPHA 3EGXA 1T3XA 1KCQA 2XF1A 5KYNA 1PD0A 2D8BA 4PKHB 1T2LA 1AK6A 1PD1A 2MP4A 3CI5G 5KYXA 2MOTA 2KVKA 1M2VA 5HVKD 1P8ZG 1QPVA 1WFSA 1NMDG 1WNJA 1Q8GA 1T44G 3EG9B 2LLFA 2VIKA 4JD2H 3CJBG 2I2QA 1EQYS 5A1MA 2FH1A 1VKKA 1ESVS 1NM1G 1TVJA 1D0NA 1MDUA 1P8XA 1SVRA 1VFQA 1JHWA 1TMWA 2FGHA 3A5MS 3FG6A 1YAGG 5FAEA 3FFNA 1SVQA 3EFOB 1AHQA 5FAFA 4PKIG 3TU5B 3EGXB 1C0GS 2W0IA 3L50A 5KYUA 3EH1A 4S10C 1T3YA 2NUTA 3EGDA 5KYXB 1M2VB 1PCXA 2VILA 5IVUA 4Z94G 1Q8XA 5KYYA 1HQZ1 2FF6G 4LIZA 1COFA 3DAWB 3EGDB 1CFYA 3FFKA 1UDMA 2HD7A 3CJCG 1J72A 2FH4A 2NUPA 4KEEA 2QTVA 4PKGG 1WM4A 5KYWA 1M2OA 1CNUA 4KEFA 3A5NS 1V6FA 4CBUG 2L72A 1H1VG 2FF3A 4CBXG 2MV2A 3A5OS 5HVKB 2NUPB 4CBWG 2FH3A 1YVNG 2XFAA 3FG7A 1F7SA 1C0FS 5KYUB 2NUTB 2LXXA 5DD2A 1NLVG 1M4JA
chains in the Genus database with same CATH superfamily
3EG9A 3Q2BA 2VACA 2FH2A 1AK7A 5KYYB 2LJ8A 5L6WC 4BEX1 1D4XG 1X67A 3A5LS 1DEJS 1SVYA 4KEDA 1RGIG 3CIPG 5KYWB 3EH2A 3EFOA 1NPHA 3EGXA 1T3XA 1KCQA 2XF1A 5KYNA 1PD0A 2D8BA 4PKHB 1T2LA 1AK6A 1PD1A 2MP4A 3CI5G 5KYXA 2MOTA 2KVKA 1M2VA 5HVKD 1P8ZG 1QPVA 1WFSA 1NMDG 1WNJA 1Q8GA 1T44G 3EG9B 2LLFA 2VIKA 4JD2H 3CJBG 2I2QA 1EQYS 5A1MA 2FH1A 1VKKA 1ESVS 1NM1G 1TVJA 1D0NA 1MDUA 1P8XA 1SVRA 1VFQA 1JHWA 1TMWA 2FGHA 3A5MS 3FG6A 1YAGG 5FAEA 3FFNA 1SVQA 3EFOB 1AHQA 5FAFA 4PKIG 3TU5B 3EGXB 1C0GS 2W0IA 3L50A 5KYUA 3EH1A 4S10C 1T3YA 2NUTA 3EGDA 5KYXB 1M2VB 1PCXA 2VILA 5IVUA 4Z94G 1Q8XA 5KYYA 1HQZ1 2FF6G 4LIZA 1COFA 3DAWB 3EGDB 1CFYA 3FFKA 1UDMA 2HD7A 3CJCG 1J72A 2FH4A 3DA7A 2NUPA 4KEEA 2QTVA 4PKGG 1WM4A 5KYWA 1M2OA 1CNUA 4KEFA 3A5NS 1V6FA 4CBUG 2L72A 1H1VG 2FF3A 4CBXG 2MV2A 3A5OS 5HVKB 2NUPB 4CBWG 2FH3A 1YVNG 2XFAA 3FG7A 1F7SA 1C0FS 5KYUB 2NUTB 2LXXA 5DD2A 1NLVG 1M4JA
chains in the Genus database with same CATH topology
3EG9A 3Q2BA 2VACA 2FH2A 1AK7A 5KYYB 2LJ8A 5L6WC 4BEX1 1D4XG 1X67A 3A5LS 1DEJS 1SVYA 4KEDA 1RGIG 3CIPG 5KYWB 3EH2A 3EFOA 1NPHA 3EGXA 1T3XA 1KCQA 2XF1A 5KYNA 1PD0A 2D8BA 4PKHB 1T2LA 1AK6A 1PD1A 2MP4A 3CI5G 5KYXA 2MOTA 2KVKA 1M2VA 5HVKD 1P8ZG 1QPVA 1WFSA 1NMDG 1WNJA 1Q8GA 1T44G 3EG9B 2LLFA 2VIKA 4JD2H 3CJBG 2I2QA 1EQYS 5A1MA 2FH1A 1VKKA 1ESVS 1NM1G 1TVJA 1D0NA 1MDUA 1P8XA 1SVRA 1VFQA 1JHWA 1TMWA 2FGHA 3A5MS 3FG6A 1YAGG 5FAEA 3FFNA 1SVQA 3EFOB 1AHQA 5FAFA 4PKIG 3TU5B 3EGXB 1C0GS 2W0IA 3L50A 5KYUA 3EH1A 4S10C 1T3YA 2NUTA 3EGDA 5KYXB 1M2VB 1PCXA 2VILA 5IVUA 4Z94G 1Q8XA 5KYYA 1HQZ1 2FF6G 4LIZA 1COFA 3DAWB 3EGDB 1CFYA 3FFKA 1UDMA 2HD7A 3CJCG 1J72A 2FH4A 3DA7A 2NUPA 4KEEA 2QTVA 4PKGG 1WM4A 5KYWA 1M2OA 1CNUA 4KEFA 3A5NS 1V6FA 4CBUG 2L72A 1H1VG 2FF3A 4CBXG 2MV2A 3A5OS 5HVKB 2NUPB 4CBWG 2FH3A 1YVNG 2XFAA 3FG7A 1F7SA 1C0FS 5KYUB 2NUTB 2LXXA 5DD2A 1NLVG 1M4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EG9 A;  3Q2B A;  2VAC A;  2FH2 A;  1AK7 A;  5KYY B;  2LJ8 A;  5L6W C;  4BEX 1;  1D4X G;  1X67 A;  3A5L S;  1DEJ S;  1SVY A;  4KED A;  1RGI G;  3CIP G;  5KYW B;  3EH2 A;  3EFO A;  1NPH A;  3EGX A;  1T3X A;  1KCQ A;  2XF1 A;  5KYN A;  1PD0 A;  2D8B A;  4PKH B;  1T2L A;  1AK6 A;  1PD1 A;  2MP4 A;  3CI5 G;  5KYX A;  2MOT A;  2KVK A;  1M2V A;  5HVK D;  1P8Z G;  1QPV A;  1WFS A;  1NMD G;  1WNJ A;  1Q8G A;  1T44 G;  3EG9 B;  2LLF A;  2VIK A;  4JD2 H;  3CJB G;  2I2Q A;  1EQY S;  5A1M A;  2FH1 A;  1VKK A;  1ESV S;  1NM1 G;  1TVJ A;  1D0N A;  1MDU A;  1P8X A;  1SVR A;  1VFQ A;  1JHW A;  1TMW A;  2FGH A;  3A5M S;  3FG6 A;  1YAG G;  5FAE A;  3FFN A;  1SVQ A;  3EFO B;  1AHQ A;  5FAF A;  4PKI G;  3TU5 B;  3EGX B;  1C0G S;  2W0I A;  3L50 A;  5KYU A;  3EH1 A;  4S10 C;  1T3Y A;  2NUT A;  3EGD A;  5KYX B;  1M2V B;  1PCX A;  2VIL A;  5IVU A;  4Z94 G;  1Q8X A;  5KYY A;  1HQZ 1;  2FF6 G;  4LIZ A;  1COF A;  3DAW B;  3EGD B;  1CFY A;  3FFK A;  1UDM A;  2HD7 A;  3CJC G;  1J72 A;  2FH4 A;  2NUP A;  4KEE A;  2QTV A;  4PKG G;  1WM4 A;  5KYW A;  1M2O A;  1CNU A;  4KEF A;  3A5N S;  1V6F A;  4CBU G;  2L72 A;  1H1V G;  2FF3 A;  4CBX G;  2MV2 A;  3A5O S;  5HVK B;  2NUP B;  4CBW G;  2FH3 A;  1YVN G;  2XFA A;  3FG7 A;  1F7S A;  1C0F S;  5KYU B;  2NUT B;  2LXX A;  5DD2 A;  1NLV G;  1M4J A; 
#chains in the Genus database with same CATH topology
 3EG9 A;  3Q2B A;  2VAC A;  2FH2 A;  1AK7 A;  5KYY B;  2LJ8 A;  5L6W C;  4BEX 1;  1D4X G;  1X67 A;  3A5L S;  1DEJ S;  1SVY A;  4KED A;  1RGI G;  3CIP G;  5KYW B;  3EH2 A;  3EFO A;  1NPH A;  3EGX A;  1T3X A;  1KCQ A;  2XF1 A;  5KYN A;  1PD0 A;  2D8B A;  4PKH B;  1T2L A;  1AK6 A;  1PD1 A;  2MP4 A;  3CI5 G;  5KYX A;  2MOT A;  2KVK A;  1M2V A;  5HVK D;  1P8Z G;  1QPV A;  1WFS A;  1NMD G;  1WNJ A;  1Q8G A;  1T44 G;  3EG9 B;  2LLF A;  2VIK A;  4JD2 H;  3CJB G;  2I2Q A;  1EQY S;  5A1M A;  2FH1 A;  1VKK A;  1ESV S;  1NM1 G;  1TVJ A;  1D0N A;  1MDU A;  1P8X A;  1SVR A;  1VFQ A;  1JHW A;  1TMW A;  2FGH A;  3A5M S;  3FG6 A;  1YAG G;  5FAE A;  3FFN A;  1SVQ A;  3EFO B;  1AHQ A;  5FAF A;  4PKI G;  3TU5 B;  3EGX B;  1C0G S;  2W0I A;  3L50 A;  5KYU A;  3EH1 A;  4S10 C;  1T3Y A;  2NUT A;  3EGD A;  5KYX B;  1M2V B;  1PCX A;  2VIL A;  5IVU A;  4Z94 G;  1Q8X A;  5KYY A;  1HQZ 1;  2FF6 G;  4LIZ A;  1COF A;  3DAW B;  3EGD B;  1CFY A;  3FFK A;  1UDM A;  2HD7 A;  3CJC G;  1J72 A;  2FH4 A;  3DA7 A;  2NUP A;  4KEE A;  2QTV A;  4PKG G;  1WM4 A;  5KYW A;  1M2O A;  1CNU A;  4KEF A;  3A5N S;  1V6F A;  4CBU G;  2L72 A;  1H1V G;  2FF3 A;  4CBX G;  2MV2 A;  3A5O S;  5HVK B;  2NUP B;  4CBW G;  2FH3 A;  1YVN G;  2XFA A;  3FG7 A;  1F7S A;  1C0F S;  5KYU B;  2NUT B;  2LXX A;  5DD2 A;  1NLV G;  1M4J A; 
#chains in the Genus database with same CATH homology
 3EG9 A;  3Q2B A;  2VAC A;  2FH2 A;  1AK7 A;  5KYY B;  2LJ8 A;  5L6W C;  4BEX 1;  1D4X G;  1X67 A;  3A5L S;  1DEJ S;  1SVY A;  4KED A;  1RGI G;  3CIP G;  5KYW B;  3EH2 A;  3EFO A;  1NPH A;  3EGX A;  1T3X A;  1KCQ A;  2XF1 A;  5KYN A;  1PD0 A;  2D8B A;  4PKH B;  1T2L A;  1AK6 A;  1PD1 A;  2MP4 A;  3CI5 G;  5KYX A;  2MOT A;  2KVK A;  1M2V A;  5HVK D;  1P8Z G;  1QPV A;  1WFS A;  1NMD G;  1WNJ A;  1Q8G A;  1T44 G;  3EG9 B;  2LLF A;  2VIK A;  4JD2 H;  3CJB G;  2I2Q A;  1EQY S;  5A1M A;  2FH1 A;  1VKK A;  1ESV S;  1NM1 G;  1TVJ A;  1D0N A;  1MDU A;  1P8X A;  1SVR A;  1VFQ A;  1JHW A;  1TMW A;  2FGH A;  3A5M S;  3FG6 A;  1YAG G;  5FAE A;  3FFN A;  1SVQ A;  3EFO B;  1AHQ A;  5FAF A;  4PKI G;  3TU5 B;  3EGX B;  1C0G S;  2W0I A;  3L50 A;  5KYU A;  3EH1 A;  4S10 C;  1T3Y A;  2NUT A;  3EGD A;  5KYX B;  1M2V B;  1PCX A;  2VIL A;  5IVU A;  4Z94 G;  1Q8X A;  5KYY A;  1HQZ 1;  2FF6 G;  4LIZ A;  1COF A;  3DAW B;  3EGD B;  1CFY A;  3FFK A;  1UDM A;  2HD7 A;  3CJC G;  1J72 A;  2FH4 A;  3DA7 A;  2NUP A;  4KEE A;  2QTV A;  4PKG G;  1WM4 A;  5KYW A;  1M2O A;  1CNU A;  4KEF A;  3A5N S;  1V6F A;  4CBU G;  2L72 A;  1H1V G;  2FF3 A;  4CBX G;  2MV2 A;  3A5O S;  5HVK B;  2NUP B;  4CBW G;  2FH3 A;  1YVN G;  2XFA A;  3FG7 A;  1F7S A;  1C0F S;  5KYU B;  2NUT B;  2LXX A;  5DD2 A;  1NLV G;  1M4J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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