1CO0A

Nmr study of trp repressor-mtr operator dna complex
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
105
structure length
105
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*TP*GP*TP*AP*CP*TP*CP*GP*TP*GP*TP*AP*CP*TP*GP*GP*TP*AP*
publication title Allostery and Induced Fit, NMR and Molecular Modeling Study of the trp-repressor - mtr DNA complex
pubmed rcsb
source organism Escherichia coli
molecule tags Transcription
total genus 19
structure length 105
sequence length 105
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1co0A00
3SSXN 1WRSR 2XDIA 1TROA 1TRRA 1JHGA 2OZ9R 1ZT9A 3G1CA 1CO0A 3FRWA 1MI7R 3KORA 1WRTR 1RCSA 1WRPR 3SSWN 3WRPA
chains in the Genus database with same CATH superfamily
1P9PA 1UAJA 4YQBA 3QUVA 4YQ8A 4YQDA 2OZ9R 3G1CA 3KNUA 4YQ9A 3FRWA 3KORA 4YVHA 1WRTR 4YPWA 4YPZA 4YQ1A 4MCDA 4YQ2A 4H3ZA 4YVKA 4YQPA 4YQIA 4MCBA 1TROA 1UAMA 4YQRA 4YQKA 4YQ3A 1ZT9A 1CO0A 4YQ6A 1MI7R 1WRPR 4YQ7A 4YQJA 3SSWN 4YQCA 4H3YA 4YPXA 4YQOA 3KY7A 1WRSR 4YQTA 4YQGA 1JHGA 5D9FA 1OY5A 4YQLA 4YQ5A 4YQAA 4YQ0A 3SSXN 1UALA 1UAKA 3AXZA 4MCCA 4YQSA 1TRRA 2XDIA 3IEFA 4IG6A 4YVGA 4YVJA 4YPYA 4YVIA 4YQNA 4YQQA 1RCSA 4YQ4A 3WRPA
chains in the Genus database with same CATH topology
3SSXN 1WRSR 2XDIA 1TROA 1TRRA 1JHGA 2OZ9R 1ZT9A 3G1CA 1CO0A 3FRWA 1MI7R 3KORA 1WRTR 1RCSA 1WRPR 3SSWN 3WRPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SSX N;  1WRS R;  2XDI A;  1TRO A;  1TRR A;  1JHG A;  2OZ9 R;  1ZT9 A;  3G1C A;  1CO0 A;  3FRW A;  1MI7 R;  3KOR A;  1WRT R;  1RCS A;  1WRP R;  3SSW N;  3WRP A; 
#chains in the Genus database with same CATH topology
 1P9P A;  1UAJ A;  4YQB A;  3QUV A;  4YQ8 A;  4YQD A;  2OZ9 R;  3G1C A;  3KNU A;  4YQ9 A;  3FRW A;  3KOR A;  4YVH A;  1WRT R;  4YPW A;  4YPZ A;  4YQ1 A;  4MCD A;  4YQ2 A;  4H3Z A;  4YVK A;  4YQP A;  4YQI A;  4MCB A;  1TRO A;  1UAM A;  4YQR A;  4YQK A;  4YQ3 A;  1ZT9 A;  1CO0 A;  4YQ6 A;  1MI7 R;  1WRP R;  4YQ7 A;  4YQJ A;  3SSW N;  4YQC A;  4H3Y A;  4YPX A;  4YQO A;  3KY7 A;  1WRS R;  4YQT A;  4YQG A;  1JHG A;  5D9F A;  1OY5 A;  4YQL A;  4YQ5 A;  4YQA A;  4YQ0 A;  3SSX N;  1UAL A;  1UAK A;  3AXZ A;  4MCC A;  4YQS A;  1TRR A;  2XDI A;  3IEF A;  4IG6 A;  4YVG A;  4YVJ A;  4YPY A;  4YVI A;  4YQN A;  4YQQ A;  1RCS A;  4YQ4 A;  3WRP A; 
#chains in the Genus database with same CATH homology
 3SSX N;  1WRS R;  2XDI A;  1TRO A;  1TRR A;  1JHG A;  2OZ9 R;  1ZT9 A;  3G1C A;  1CO0 A;  3FRW A;  1MI7 R;  3KOR A;  1WRT R;  1RCS A;  1WRP R;  3SSW N;  3WRP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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