The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
112
|
sequence length |
379
|
structure length |
378
|
Chain Sequence |
IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGILGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway.
pubmed doi rcsb |
| molecule keywords |
CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT
|
| source organism |
Escherichia coli
|
| molecule tags |
Ligase
|
| total genus |
112
|
| structure length |
378
|
| sequence length |
379
|
| chains with identical sequence |
D, F, H
|
| ec nomenclature |
ec
6.3.5.5: Carbamoyl-phosphate synthase (glutamine-hydrolyzing). |
| pdb deposition date | 1999-08-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00117 | GATase | Glutamine amidotransferase class-I |
| B | PF00988 | CPSase_sm_chain | Carbamoyl-phosphate synthase small chain, CPSase domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold | ||
| Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase; domain 1 | Carbamoyl-phosphate synthase small subunit, N-terminal domain |
