1CSOI

Crystal structure of the omtky3 p1 variant omtky3-ile18i in complex with sgpb
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTIEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEINASE B
publication title Deleterious effects of beta-branched residues in the S1 specificity pocket of Streptomyces griseus proteinase B (SGPB): crystal structures of the turkey ovomucoid third domain variants Ile18I, Val18I, Thr18I, and Ser18I in complex with SGPB.
pubmed rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 12
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1csoI00
1MT1A 5JHWC 3B4VC 1IW4A 2NU4I 2JYYA 3TJQA 3SGQI 1SGEI 2GKVA 1CGJI 2SGQI 3HH2C 1TBQR 2ARPF 2LEOA 1H0ZA 1SGQI 2JZMA 3OVOA 2BUSA 2KCXA 1YU6C 5DAEA 2SGFI 1CSOI 2KMPA 1CE3A 1HPTA 1LR7A 2OVOA 1IY6A 2N17A 1UUCA 1TGSI 2SGDI 2QQCA 2JXDA 2KMQA 1OYVI 1M8CA 1DS2I 1CT2I 3QTLD 2ERWA 1TBRR 2NU1I 2SGEI 1M8BA 1SGYI 2GKTI 1DS3I 1SGRI 3SEKC 1CT4I 1UVFA 2M5XA 4OVOA 1HJAI 1OMTA 2XRCA 2N52A 1BUSA 1SGDI 1PJUA 1HDLA 1FYBA 3SGBI 2WCYA 2GKRI 2NU0I 1SGPI 1N13A 1TURA 2KMRA 2QQDA 2KMOA 1OVOA 2SGPI 1PPFI 1Y1CA 2NU2I 1CHOI 2NU3I 4GI3C 2V53A 1LR9A 1R0RI 1KMAA 1YTPA 1BMOA 2F3CI 1TIHA 1Z7KB 1CT0I 1IY5A 2B0UC 4HGUA 2P6AC 1CGII 1Y1BA 1LR8A 4SGBI 1UVGA 1TUSA 2N71A 1NUBA 1OMUA 1PCEA 1SGNI 1AN1I
chains in the Genus database with same CATH superfamily
1MT1A 3PDNA 3QAHA 3UFFA 2DKVA 2UVOA 3B4VC 5JHWC 1IW4A 2ORVA 2NU4I 2ODDA 2JYYA 1V1IA 3TJQA 1K7VA 1UHAA 3SGQI 2QPOA 1SGEI 2GKVA 1CGJI 2SGQI 2OD1A 4MPIA 2GVIA 3UEJA 3VDUA 1KBFA 3HH2C 1TBQR 2CWHA 2ARPF 2LEOA 2ENNA 1H0ZA 1SGQI 2JZMA 3OVOA 1WKXA 2BUSA 2OU2A 4JCVE 7WGAA 2KCXA 1YU6C 3R5BA 2SGFI 5DAEA 3TOAA 5CCLA 1P9GA 1CSOI 1W3SA 2CWGA 1KBEA 2KMPA 4UXIA 5EX3A 1HPTA 1CE3A 2LUYA 1LR7A 2OZUA 3UGLA 1Z2IA 3E2IA 2OVOA 4DNCA 1UUCA 2N17A 1TGSI 2SGDI 3CXLA 1IY6A 2QQCA 2JA1A 2A20A 4AMLA 3VDPA 1Q9BA 2ENZA 2JXDA 2WVJA 5E3RA 1K7TA 2KMQA 4E1PA 1OYVI 2L8EA 3R5AA 1DS2I 1M8CA 1CT2I 3QTLD 2ERWA 1TBRR 2NU1I 4FKDA 2SGEI 2X52A 1HEVA 1M8BA 1SGYI 1XA6A 2GKTI 1DS3I 1XX6A 1SGRI 2W0TA 2J9RA 1CT4I 1U5KA 1ULNA 1UVFA 2B8TA 2M5XA 4OVOA 1HJAI 3SEKC 3TO7A 3UOEA 1OMTA 5E3PA 5E3QA 3TO6A 1K7UA 1VDDA 2FNFX 5J8CA 2XRCA 2N1AB 3OXFA 1X74A 2N52A 1BUSA 1SGDI 1WTJA 2DB6A 3R5DA 2GIVA 2L7XA 1PJUA 1V1HA 2ROWA 1HDLA 2QQEA 1NXUA 1WGCA 2X3TA 3SGBI 3FSXA 2WCYA 2GKRI 1FAQA 1FYBA 1TBOA 1FARA 2NU0I 9WGAA 1RFHA 1SGPI 1N13A 1TURA 2LB7A 1Y8FA 3UEYA 5J8FA 2E73A 5FUVA 2KMRA 2Y0MA 5HI7A 2QQDA 2UZ3A 2KMOA 1OVOA 1R79A 2SGPI 1MJ9A 5HQ8A 2ELIA 1P9ZA 1PPFI 1TBNA 1Y1CA 2JW6A 3UGIA 2NU2I 4A24A 1MJAA 1CHOI 2CWFA 5FUWA 2NU3I 1PTRA 3RU0A 3R5CA 1S20A 3UGDA 5CCMA 4GI3C 2DIPA 4UXHA 2V53A 2YQPA 2QQ0A 2PQ8A 2YUUA 2V1CA 4E1RA 1W4RA 1FY7A 4WP4A 1LR9A 3OXLA 1R0RI 1WGTA 2CJSC 2V1CC 1YTPA 1BMOA 5FUXA 1TOTA 1KMAA 3D00A 2F3CI 1TIHA 1Z7KB 1CT0I 3OL0A 4UXJA 1IY5A 2B0UC 2VRWB 2WGCA 3BJIA 3E59A 2P6AC 1CGII 2RC4A 3MEKA 3FSYA 2J87A 4HGUA 3TOBA 5FUYA 1MJBA 1ULKA 1Y1BA 3FC3A 3GOXA 1LR8A 3VE5A 4SGBI 3OXGA 1PTQA 1XBTA 1UVGA 1TUSA 2N71A 2ORWA 3KY9A 1NUBA 1ULMA 5EX0A 1OMUA 3TO9A 2E5RA 3QWPA 1PCEA 1SGNI 2RIJA 4B6DA 1AN1I 2K9HA 1X4SA 4L9MA
chains in the Genus database with same CATH topology
1MT1A 3PDNA 3UFFA 5JHWC 3B4VC 1IW4A 2ORVA 2NU4I 2ODDA 2JYYA 1V1IA 3TJQA 3SGQI 2QPOA 1SGEI 2GKVA 1CGJI 2SGQI 2OD1A 3VDUA 2GVIA 3UEJA 1KBFA 3HH2C 1TBQR 2ARPF 2LEOA 2ENNA 1H0ZA 1SGQI 2JZMA 3OVOA 2BUSA 4JCVE 2KCXA 1YU6C 5DAEA 2SGFI 5CCLA 1CSOI 1W3SA 2KMPA 1KBEA 4UXIA 5EX3A 1CE3A 1HPTA 2LUYA 1LR7A 3UGLA 3E2IA 2OVOA 1IY6A 1UUCA 2N17A 1TGSI 2SGDI 3CXLA 2QQCA 2JA1A 2A20A 3VDPA 2ENZA 2JXDA 2WVJA 2KMQA 4E1PA 1OYVI 2L8EA 1M8CA 1DS2I 1CT2I 3QTLD 2ERWA 1TBRR 2NU1I 4FKDA 2SGEI 1M8BA 1SGYI 1XA6A 2GKTI 1DS3I 1XX6A 1SGRI 2W0TA 2J9RA 1CT4I 1U5KA 1UVFA 2B8TA 2M5XA 4OVOA 3SEKC 1HJAI 1OMTA 1VDDA 2FNFX 2XRCA 2N1AB 3OXFA 1X74A 2N52A 1BUSA 1SGDI 2DB6A 2L7XA 1PJUA 1V1HA 2ROWA 1HDLA 2QQEA 1FAQA 1FYBA 3SGBI 2WCYA 2GKRI 1TBOA 1FARA 2NU0I 1RFHA 1SGPI 1N13A 1TURA 3UEYA 1Y8FA 2E73A 5FUVA 2KMRA 5HI7A 2QQDA 2UZ3A 2KMOA 1OVOA 1R79A 2SGPI 5HQ8A 2ELIA 1PPFI 1TBNA 1Y1CA 2JW6A 3UGIA 2NU2I 4A24A 1CHOI 5FUWA 2NU3I 1PTRA 3RU0A 3UGDA 5CCMA 4GI3C 2DIPA 4UXHA 2V53A 2YQPA 2QQ0A 2YUUA 2V1CA 4E1RA 1W4RA 1LR9A 3OXLA 1R0RI 2CJSC 1KMAA 2V1CC 1YTPA 1BMOA 5FUXA 1TOTA 3D00A 2F3CI 1TIHA 1Z7KB 1CT0I 3OL0A 4UXJA 1IY5A 2B0UC 2VRWB 3BJIA 3E59A 3MEKA 2P6AC 1CGII 4HGUA 2J87A 5FUYA 3FC3A 1Y1BA 3GOXA 1LR8A 3VE5A 4SGBI 3OXGA 1PTQA 1XBTA 1UVGA 1TUSA 2N71A 2ORWA 3KY9A 1NUBA 5EX0A 1OMUA 2E5RA 3QWPA 1PCEA 1SGNI 4B6DA 1AN1I 2K9HA 1X4SA 4L9MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MT1 A;  5JHW C;  3B4V C;  1IW4 A;  2NU4 I;  2JYY A;  3TJQ A;  3SGQ I;  1SGE I;  2GKV A;  1CGJ I;  2SGQ I;  3HH2 C;  1TBQ R;  2ARP F;  2LEO A;  1H0Z A;  1SGQ I;  2JZM A;  3OVO A;  2BUS A;  2KCX A;  1YU6 C;  5DAE A;  2SGF I;  1CSO I;  2KMP A;  1CE3 A;  1HPT A;  1LR7 A;  2OVO A;  1IY6 A;  2N17 A;  1UUC A;  1TGS I;  2SGD I;  2QQC A;  2JXD A;  2KMQ A;  1OYV I;  1M8C A;  1DS2 I;  1CT2 I;  3QTL D;  2ERW A;  1TBR R;  2NU1 I;  2SGE I;  1M8B A;  1SGY I;  2GKT I;  1DS3 I;  1SGR I;  3SEK C;  1CT4 I;  1UVF A;  2M5X A;  4OVO A;  1HJA I;  1OMT A;  2XRC A;  2N52 A;  1BUS A;  1SGD I;  1PJU A;  1HDL A;  1FYB A;  3SGB I;  2WCY A;  2GKR I;  2NU0 I;  1SGP I;  1N13 A;  1TUR A;  2KMR A;  2QQD A;  2KMO A;  1OVO A;  2SGP I;  1PPF I;  1Y1C A;  2NU2 I;  1CHO I;  2NU3 I;  4GI3 C;  2V53 A;  1LR9 A;  1R0R I;  1KMA A;  1YTP A;  1BMO A;  2F3C I;  1TIH A;  1Z7K B;  1CT0 I;  1IY5 A;  2B0U C;  4HGU A;  2P6A C;  1CGI I;  1Y1B A;  1LR8 A;  4SGB I;  1UVG A;  1TUS A;  2N71 A;  1NUB A;  1OMU A;  1PCE A;  1SGN I;  1AN1 I; 
#chains in the Genus database with same CATH topology
 1MT1 A;  3PDN A;  3QAH A;  3UFF A;  2DKV A;  2UVO A;  3B4V C;  5JHW C;  1IW4 A;  2ORV A;  2NU4 I;  2ODD A;  2JYY A;  1V1I A;  3TJQ A;  1K7V A;  1UHA A;  3SGQ I;  2QPO A;  1SGE I;  2GKV A;  1CGJ I;  2SGQ I;  2OD1 A;  4MPI A;  2GVI A;  3UEJ A;  3VDU A;  1KBF A;  3HH2 C;  1TBQ R;  2CWH A;  2ARP F;  2LEO A;  2ENN A;  1H0Z A;  1SGQ I;  2JZM A;  3OVO A;  1WKX A;  2BUS A;  2OU2 A;  4JCV E;  7WGA A;  2KCX A;  1YU6 C;  3R5B A;  2SGF I;  5DAE A;  3TOA A;  5CCL A;  1P9G A;  1CSO I;  1W3S A;  2CWG A;  1KBE A;  2KMP A;  4UXI A;  5EX3 A;  1HPT A;  1CE3 A;  2LUY A;  1LR7 A;  2OZU A;  3UGL A;  1Z2I A;  3E2I A;  2OVO A;  4DNC A;  1UUC A;  2N17 A;  1TGS I;  2SGD I;  3CXL A;  1IY6 A;  2QQC A;  2JA1 A;  2A20 A;  4AML A;  3VDP A;  1Q9B A;  2ENZ A;  2JXD A;  2WVJ A;  5E3R A;  1K7T A;  2KMQ A;  4E1P A;  1OYV I;  2L8E A;  3R5A A;  1DS2 I;  1M8C A;  1CT2 I;  3QTL D;  2ERW A;  1TBR R;  2NU1 I;  4FKD A;  2SGE I;  2X52 A;  1HEV A;  1M8B A;  1SGY I;  1XA6 A;  2GKT I;  1DS3 I;  1XX6 A;  1SGR I;  2W0T A;  2J9R A;  1CT4 I;  1U5K A;  1ULN A;  1UVF A;  2B8T A;  2M5X A;  4OVO A;  1HJA I;  3SEK C;  3TO7 A;  3UOE A;  1OMT A;  5E3P A;  5E3Q A;  3TO6 A;  1K7U A;  1VDD A;  2FNF X;  5J8C A;  2XRC A;  2N1A B;  3OXF A;  1X74 A;  2N52 A;  1BUS A;  1SGD I;  1WTJ A;  2DB6 A;  3R5D A;  2GIV A;  2L7X A;  1PJU A;  1V1H A;  2ROW A;  1HDL A;  2QQE A;  1NXU A;  1WGC A;  2X3T A;  3SGB I;  3FSX A;  2WCY A;  2GKR I;  1FAQ A;  1FYB A;  1TBO A;  1FAR A;  2NU0 I;  9WGA A;  1RFH A;  1SGP I;  1N13 A;  1TUR A;  2LB7 A;  1Y8F A;  3UEY A;  5J8F A;  2E73 A;  5FUV A;  2KMR A;  2Y0M A;  5HI7 A;  2QQD A;  2UZ3 A;  2KMO A;  1OVO A;  1R79 A;  2SGP I;  1MJ9 A;  5HQ8 A;  2ELI A;  1P9Z A;  1PPF I;  1TBN A;  1Y1C A;  2JW6 A;  3UGI A;  2NU2 I;  4A24 A;  1MJA A;  1CHO I;  2CWF A;  5FUW A;  2NU3 I;  1PTR A;  3RU0 A;  3R5C A;  1S20 A;  3UGD A;  5CCM A;  4GI3 C;  2DIP A;  4UXH A;  2V53 A;  2YQP A;  2QQ0 A;  2PQ8 A;  2YUU A;  2V1C A;  4E1R A;  1W4R A;  1FY7 A;  4WP4 A;  1LR9 A;  3OXL A;  1R0R I;  1WGT A;  2CJS C;  2V1C C;  1YTP A;  1BMO A;  5FUX A;  1TOT A;  1KMA A;  3D00 A;  2F3C I;  1TIH A;  1Z7K B;  1CT0 I;  3OL0 A;  4UXJ A;  1IY5 A;  2B0U C;  2VRW B;  2WGC A;  3BJI A;  3E59 A;  2P6A C;  1CGI I;  2RC4 A;  3MEK A;  3FSY A;  2J87 A;  4HGU A;  3TOB A;  5FUY A;  1MJB A;  1ULK A;  1Y1B A;  3FC3 A;  3GOX A;  1LR8 A;  3VE5 A;  4SGB I;  3OXG A;  1PTQ A;  1XBT A;  1UVG A;  1TUS A;  2N71 A;  2ORW A;  3KY9 A;  1NUB A;  1ULM A;  5EX0 A;  1OMU A;  3TO9 A;  2E5R A;  3QWP A;  1PCE A;  1SGN I;  2RIJ A;  4B6D A;  1AN1 I;  2K9H A;  1X4S A;  4L9M A; 
#chains in the Genus database with same CATH homology
 1MT1 A;  3PDN A;  3UFF A;  5JHW C;  3B4V C;  1IW4 A;  2ORV A;  2NU4 I;  2ODD A;  2JYY A;  1V1I A;  3TJQ A;  3SGQ I;  2QPO A;  1SGE I;  2GKV A;  1CGJ I;  2SGQ I;  2OD1 A;  3VDU A;  2GVI A;  3UEJ A;  1KBF A;  3HH2 C;  1TBQ R;  2ARP F;  2LEO A;  2ENN A;  1H0Z A;  1SGQ I;  2JZM A;  3OVO A;  2BUS A;  4JCV E;  2KCX A;  1YU6 C;  5DAE A;  2SGF I;  5CCL A;  1CSO I;  1W3S A;  2KMP A;  1KBE A;  4UXI A;  5EX3 A;  1CE3 A;  1HPT A;  2LUY A;  1LR7 A;  3UGL A;  3E2I A;  2OVO A;  1IY6 A;  1UUC A;  2N17 A;  1TGS I;  2SGD I;  3CXL A;  2QQC A;  2JA1 A;  2A20 A;  3VDP A;  2ENZ A;  2JXD A;  2WVJ A;  2KMQ A;  4E1P A;  1OYV I;  2L8E A;  1M8C A;  1DS2 I;  1CT2 I;  3QTL D;  2ERW A;  1TBR R;  2NU1 I;  4FKD A;  2SGE I;  1M8B A;  1SGY I;  1XA6 A;  2GKT I;  1DS3 I;  1XX6 A;  1SGR I;  2W0T A;  2J9R A;  1CT4 I;  1U5K A;  1UVF A;  2B8T A;  2M5X A;  4OVO A;  3SEK C;  1HJA I;  1OMT A;  1VDD A;  2FNF X;  2XRC A;  2N1A B;  3OXF A;  1X74 A;  2N52 A;  1BUS A;  1SGD I;  2DB6 A;  2L7X A;  1PJU A;  1V1H A;  2ROW A;  1HDL A;  2QQE A;  1FAQ A;  1FYB A;  3SGB I;  2WCY A;  2GKR I;  1TBO A;  1FAR A;  2NU0 I;  1RFH A;  1SGP I;  1N13 A;  1TUR A;  3UEY A;  1Y8F A;  2E73 A;  5FUV A;  2KMR A;  5HI7 A;  2QQD A;  2UZ3 A;  2KMO A;  1OVO A;  1R79 A;  2SGP I;  5HQ8 A;  2ELI A;  1PPF I;  1TBN A;  1Y1C A;  2JW6 A;  3UGI A;  2NU2 I;  4A24 A;  1CHO I;  5FUW A;  2NU3 I;  1PTR A;  3RU0 A;  3UGD A;  5CCM A;  4GI3 C;  2DIP A;  4UXH A;  2V53 A;  2YQP A;  2QQ0 A;  2YUU A;  2V1C A;  4E1R A;  1W4R A;  1LR9 A;  3OXL A;  1R0R I;  2CJS C;  1KMA A;  2V1C C;  1YTP A;  1BMO A;  5FUX A;  1TOT A;  3D00 A;  2F3C I;  1TIH A;  1Z7K B;  1CT0 I;  3OL0 A;  4UXJ A;  1IY5 A;  2B0U C;  2VRW B;  3BJI A;  3E59 A;  3MEK A;  2P6A C;  1CGI I;  4HGU A;  2J87 A;  5FUY A;  3FC3 A;  1Y1B A;  3GOX A;  1LR8 A;  3VE5 A;  4SGB I;  3OXG A;  1PTQ A;  1XBT A;  1UVG A;  1TUS A;  2N71 A;  2ORW A;  3KY9 A;  1NUB A;  5EX0 A;  1OMU A;  2E5R A;  3QWP A;  1PCE A;  1SGN I;  4B6D A;  1AN1 I;  2K9H A;  1X4S A;  4L9M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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