1CSOI

Crystal structure of the omtky3 p1 variant omtky3-ile18i in complex with sgpb
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTIEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords PROTEINASE B
publication title Deleterious effects of beta-branched residues in the S1 specificity pocket of Streptomyces griseus proteinase B (SGPB): crystal structures of the turkey ovomucoid third domain variants Ile18I, Val18I, Thr18I, and Ser18I in complex with SGPB.
pubmed rcsb
source organism Meleagris gallopavo
total genus 12
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1csoI00
1M8BA 2SGDI 1SGQI 4OVOA 1Y1CA 2NU4I 1CSOI 1SGEI 1PJUA 4HGUA 1PPFI 1AN1I 3HH2C 1YU6C 2NU2I 1TURA 1CHOI 2GKTI 1IY6A 1HJAI 1OYVI 1CT0I 1Z7KB 2B0UC 3QTLD 2KMOA 1M8CA 2F3CI 2KMPA 1FYBA 1OMTA 2BUSA 2NU3I 2NU0I 2QQCA 2SGFI 1SGRI 4GI3C 3SGBI 1LR7A 1TIHA 3OVOA 1UUCA 1HPTA 2WCYA 1CT2I 2JZMA 1Y1BA 3SEKC 1CT4I 3TJQA 2M5XA 2KMQA 1TBQR 2JYYA 1OVOA 1BUSA 2GKRI 2GKVA 1TGSI 1LR9A 1DS3I 2QQDA 1OMUA 5JHWC 2P6AC 1CGJI 1R0RI 2XRCA 1UVFA 2JXDA 3SGQI 1IY5A 5DAEA 1H0ZA 2N17A 2KCXA 1IW4A 2N71A 1CGII 1SGPI 1NUBA 1SGNI 2ERWA 2LEOA 2NU1I 1SGYI 1UVGA 1SGDI 2SGPI 1CE3A 1LR8A 2V53A 1YTPA 1TBRR 2OVOA 2KMRA 1DS2I 2ARPF 1N13A 2SGQI 2SGEI 1MT1A 1HDLA 3B4VC 4SGBI 1BMOA 1KMAA 1TUSA 2N52A 1PCEA
chains in the Genus database with same CATH superfamily
1M8BA 2SGDI 2L7XA 4E1RA 3TO7A 1MJBA 1SGQI 1ULKA 1Y1CA 1Z2IA 2NU4I 4OVOA 1CSOI 1SGEI 3OXLA 1PTRA 2E73A 1PJUA 4HGUA 1PPFI 1PTQA 1S20A 2OZUA 1AN1I 3R5CA 3QAHA 3HH2C 2V1CC 1ULNA 2OU2A 1YU6C 3UGDA 4JCVE 2L8EA 3VDUA 3OXFA 5FUVA 3MEKA 2NU2I 3KY9A 1TURA 1FY7A 1CHOI 2GKTI 3TOBA 2YUUA 1HJAI 1IY6A 5CCLA 5J8CA 1OYVI 1CT0I 1Z7KB 2B0UC 5E3RA 4B6DA 3QTLD 1P9GA 2KMOA 1XBTA 1M8CA 3UFFA 2ENZA 2F3CI 2K9HA 3RU0A 1XX6A 2OD1A 2V1CA 2CWGA 2A20A 2KMPA 4A24A 9WGAA 1NXUA 1K7UA 1WGTA 2DIPA 5E3QA 1FYBA 4WP4A 1OMTA 1TOTA 3TO9A 2ELIA 2BUSA 2NU3I 2NU0I 2QQCA 2SGFI 1X74A 5E3PA 2B8TA 2QPOA 2X52A 1SGRI 2QQEA 2RC4A 2UVOA 1MJAA 1Q9BA 5HI7A 2WGCA 5J8FA 2Y0MA 3FSXA 1MJ9A 2LUYA 3UGIA 3R5AA 4GI3C 2PQ8A 1W4RA 5EX0A 4DNCA 3SGBI 3E59A 4UXJA 1LR7A 1TIHA 1X4SA 3OVOA 3UOEA 3OXGA 1UUCA 2ORWA 1HPTA 1K7VA 1CT2I 2WCYA 4E1PA 5HQ8A 1R79A 2GVIA 2JZMA 1Y1BA 3E2IA 3SEKC 1P9ZA 1Y8FA 1KBEA 1CT4I 3TJQA 1TBNA 1VDDA 2ROWA 2M5XA 2ENNA 2KMQA 2UZ3A 3OL0A 4MPIA 1TBQR 2DKVA 2JYYA 2GIVA 3TO6A 1OVOA 3UEYA 1WGCA 1BUSA 2GKRI 2ODDA 3QWPA 2JW6A 1W3SA 2N1AB 4UXHA 2GKVA 1TGSI 3VE5A 4FKDA 1V1IA 3FSYA 1LR9A 1DS3I 2QQDA 4AMLA 1OMUA 1WTJA 5JHWC 2P6AC 1CGJI 2W0TA 1R0RI 2XRCA 1UVFA 2JXDA 3R5BA 3SGQI 1IY5A 5DAEA 1H0ZA 2N17A 2RIJA 3VDPA 2CJSC 2KCXA 1XA6A 3D00A 1IW4A 1K7TA 1CGII 1SGPI 1NUBA 1SGNI 2CWFA 2N71A 2J87A 5FUWA 2ERWA 1TBOA 2CWHA 2LEOA 2NU1I 3PDNA 7WGAA 1SGYI 1UVGA 2E5RA 2ORVA 5FUXA 3R5DA 1SGDI 2QQ0A 1FAQA 2SGPI 4UXIA 1CE3A 1LR8A 1FARA 3TOAA 2V53A 1YTPA 1RFHA 3BJIA 3UGLA 2FNFX 5EX3A 1TBRR 2OVOA 3GOXA 2JA1A 1U5KA 2KMRA 1WKXA 5CCMA 1DS2I 3UEJA 2ARPF 2VRWB 1N13A 2SGQI 2LB7A 2WVJA 5FUYA 2SGEI 1MT1A 2DB6A 3CXLA 1HDLA 3B4VC 1V1HA 3FC3A 4SGBI 1KBFA 1ULMA 2X3TA 1UHAA 1BMOA 2YQPA 2J9RA 1TUSA 1KMAA 2N52A 1PCEA 1HEVA 4L9MA
chains in the Genus database with same CATH topology
1M8BA 2SGDI 2L7XA 4E1RA 1SGQI 4OVOA 1Y1CA 2NU4I 1CSOI 1SGEI 3OXLA 1PTRA 2E73A 1PJUA 4HGUA 1PPFI 1PTQA 1AN1I 3HH2C 2V1CC 1YU6C 3UGDA 4JCVE 2L8EA 3VDUA 3OXFA 5FUVA 3MEKA 2NU2I 3KY9A 1TURA 1CHOI 2GKTI 1IY6A 2YUUA 1HJAI 5CCLA 1OYVI 1CT0I 1Z7KB 2B0UC 4B6DA 3QTLD 2KMOA 1XBTA 1M8CA 3UFFA 2ENZA 2F3CI 2K9HA 3RU0A 1XX6A 2OD1A 2V1CA 2A20A 2KMPA 4A24A 2DIPA 1FYBA 1OMTA 1TOTA 2ELIA 2BUSA 2NU3I 2NU0I 2QQCA 2SGFI 1X74A 2B8TA 2QPOA 1SGRI 2QQEA 5HI7A 2LUYA 3UGIA 4GI3C 1W4RA 5EX0A 3SGBI 3E59A 4UXJA 1LR7A 1TIHA 1X4SA 3OVOA 3OXGA 1UUCA 2ORWA 1HPTA 2WCYA 1CT2I 5HQ8A 4E1PA 1R79A 2GVIA 2JZMA 1Y1BA 3E2IA 3SEKC 1Y8FA 1KBEA 1CT4I 3TJQA 1TBNA 1VDDA 2ROWA 2M5XA 2ENNA 2KMQA 2UZ3A 3OL0A 1TBQR 2JYYA 3UEYA 1OVOA 1BUSA 2GKRI 2ODDA 3QWPA 2JW6A 1W3SA 2N1AB 4UXHA 2GKVA 1TGSI 3VE5A 4FKDA 1V1IA 1LR9A 1DS3I 2QQDA 1OMUA 5JHWC 2P6AC 1CGJI 2W0TA 1R0RI 2XRCA 1UVFA 2JXDA 3SGQI 1IY5A 5DAEA 1H0ZA 2N17A 3VDPA 2CJSC 2KCXA 1XA6A 3D00A 1IW4A 2N71A 1CGII 1SGPI 1NUBA 1SGNI 2J87A 5FUWA 2ERWA 1TBOA 2LEOA 2NU1I 3PDNA 1SGYI 1UVGA 2E5RA 2ORVA 5FUXA 1SGDI 2QQ0A 1FAQA 2SGPI 4UXIA 1CE3A 1LR8A 1FARA 2V53A 1YTPA 1RFHA 3BJIA 3UGLA 2FNFX 5EX3A 1TBRR 2OVOA 3GOXA 2JA1A 1U5KA 2KMRA 5CCMA 1DS2I 3UEJA 2ARPF 2VRWB 1N13A 2SGQI 2WVJA 5FUYA 2SGEI 1MT1A 2DB6A 3CXLA 1HDLA 3B4VC 1V1HA 3FC3A 4SGBI 1KBFA 1BMOA 2YQPA 2J9RA 1TUSA 1KMAA 2N52A 1PCEA 4L9MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M8B A;  2SGD I;  1SGQ I;  4OVO A;  1Y1C A;  2NU4 I;  1CSO I;  1SGE I;  1PJU A;  4HGU A;  1PPF I;  1AN1 I;  3HH2 C;  1YU6 C;  2NU2 I;  1TUR A;  1CHO I;  2GKT I;  1IY6 A;  1HJA I;  1OYV I;  1CT0 I;  1Z7K B;  2B0U C;  3QTL D;  2KMO A;  1M8C A;  2F3C I;  2KMP A;  1FYB A;  1OMT A;  2BUS A;  2NU3 I;  2NU0 I;  2QQC A;  2SGF I;  1SGR I;  4GI3 C;  3SGB I;  1LR7 A;  1TIH A;  3OVO A;  1UUC A;  1HPT A;  2WCY A;  1CT2 I;  2JZM A;  1Y1B A;  3SEK C;  1CT4 I;  3TJQ A;  2M5X A;  2KMQ A;  1TBQ R;  2JYY A;  1OVO A;  1BUS A;  2GKR I;  2GKV A;  1TGS I;  1LR9 A;  1DS3 I;  2QQD A;  1OMU A;  5JHW C;  2P6A C;  1CGJ I;  1R0R I;  2XRC A;  1UVF A;  2JXD A;  3SGQ I;  1IY5 A;  5DAE A;  1H0Z A;  2N17 A;  2KCX A;  1IW4 A;  2N71 A;  1CGI I;  1SGP I;  1NUB A;  1SGN I;  2ERW A;  2LEO A;  2NU1 I;  1SGY I;  1UVG A;  1SGD I;  2SGP I;  1CE3 A;  1LR8 A;  2V53 A;  1YTP A;  1TBR R;  2OVO A;  2KMR A;  1DS2 I;  2ARP F;  1N13 A;  2SGQ I;  2SGE I;  1MT1 A;  1HDL A;  3B4V C;  4SGB I;  1BMO A;  1KMA A;  1TUS A;  2N52 A;  1PCE A; 
#chains in the Genus database with same CATH topology
 1M8B A;  2SGD I;  2L7X A;  4E1R A;  3TO7 A;  1MJB A;  1SGQ I;  1ULK A;  1Y1C A;  1Z2I A;  2NU4 I;  4OVO A;  1CSO I;  1SGE I;  3OXL A;  1PTR A;  2E73 A;  1PJU A;  4HGU A;  1PPF I;  1PTQ A;  1S20 A;  2OZU A;  1AN1 I;  3R5C A;  3QAH A;  3HH2 C;  2V1C C;  1ULN A;  2OU2 A;  1YU6 C;  3UGD A;  4JCV E;  2L8E A;  3VDU A;  3OXF A;  5FUV A;  3MEK A;  2NU2 I;  3KY9 A;  1TUR A;  1FY7 A;  1CHO I;  2GKT I;  3TOB A;  2YUU A;  1HJA I;  1IY6 A;  5CCL A;  5J8C A;  1OYV I;  1CT0 I;  1Z7K B;  2B0U C;  5E3R A;  4B6D A;  3QTL D;  1P9G A;  2KMO A;  1XBT A;  1M8C A;  3UFF A;  2ENZ A;  2F3C I;  2K9H A;  3RU0 A;  1XX6 A;  2OD1 A;  2V1C A;  2CWG A;  2A20 A;  2KMP A;  4A24 A;  9WGA A;  1NXU A;  1K7U A;  1WGT A;  2DIP A;  5E3Q A;  1FYB A;  4WP4 A;  1OMT A;  1TOT A;  3TO9 A;  2ELI A;  2BUS A;  2NU3 I;  2NU0 I;  2QQC A;  2SGF I;  1X74 A;  5E3P A;  2B8T A;  2QPO A;  2X52 A;  1SGR I;  2QQE A;  2RC4 A;  2UVO A;  1MJA A;  1Q9B A;  5HI7 A;  2WGC A;  5J8F A;  2Y0M A;  3FSX A;  1MJ9 A;  2LUY A;  3UGI A;  3R5A A;  4GI3 C;  2PQ8 A;  1W4R A;  5EX0 A;  4DNC A;  3SGB I;  3E59 A;  4UXJ A;  1LR7 A;  1TIH A;  1X4S A;  3OVO A;  3UOE A;  3OXG A;  1UUC A;  2ORW A;  1HPT A;  1K7V A;  1CT2 I;  2WCY A;  4E1P A;  5HQ8 A;  1R79 A;  2GVI A;  2JZM A;  1Y1B A;  3E2I A;  3SEK C;  1P9Z A;  1Y8F A;  1KBE A;  1CT4 I;  3TJQ A;  1TBN A;  1VDD A;  2ROW A;  2M5X A;  2ENN A;  2KMQ A;  2UZ3 A;  3OL0 A;  4MPI A;  1TBQ R;  2DKV A;  2JYY A;  2GIV A;  3TO6 A;  1OVO A;  3UEY A;  1WGC A;  1BUS A;  2GKR I;  2ODD A;  3QWP A;  2JW6 A;  1W3S A;  2N1A B;  4UXH A;  2GKV A;  1TGS I;  3VE5 A;  4FKD A;  1V1I A;  3FSY A;  1LR9 A;  1DS3 I;  2QQD A;  4AML A;  1OMU A;  1WTJ A;  5JHW C;  2P6A C;  1CGJ I;  2W0T A;  1R0R I;  2XRC A;  1UVF A;  2JXD A;  3R5B A;  3SGQ I;  1IY5 A;  5DAE A;  1H0Z A;  2N17 A;  2RIJ A;  3VDP A;  2CJS C;  2KCX A;  1XA6 A;  3D00 A;  1IW4 A;  1K7T A;  1CGI I;  1SGP I;  1NUB A;  1SGN I;  2CWF A;  2N71 A;  2J87 A;  5FUW A;  2ERW A;  1TBO A;  2CWH A;  2LEO A;  2NU1 I;  3PDN A;  7WGA A;  1SGY I;  1UVG A;  2E5R A;  2ORV A;  5FUX A;  3R5D A;  1SGD I;  2QQ0 A;  1FAQ A;  2SGP I;  4UXI A;  1CE3 A;  1LR8 A;  1FAR A;  3TOA A;  2V53 A;  1YTP A;  1RFH A;  3BJI A;  3UGL A;  2FNF X;  5EX3 A;  1TBR R;  2OVO A;  3GOX A;  2JA1 A;  1U5K A;  2KMR A;  1WKX A;  5CCM A;  1DS2 I;  3UEJ A;  2ARP F;  2VRW B;  1N13 A;  2SGQ I;  2LB7 A;  2WVJ A;  5FUY A;  2SGE I;  1MT1 A;  2DB6 A;  3CXL A;  1HDL A;  3B4V C;  1V1H A;  3FC3 A;  4SGB I;  1KBF A;  1ULM A;  2X3T A;  1UHA A;  1BMO A;  2YQP A;  2J9R A;  1TUS A;  1KMA A;  2N52 A;  1PCE A;  1HEV A;  4L9M A; 
#chains in the Genus database with same CATH homology
 1M8B A;  2SGD I;  2L7X A;  4E1R A;  1SGQ I;  4OVO A;  1Y1C A;  2NU4 I;  1CSO I;  1SGE I;  3OXL A;  1PTR A;  2E73 A;  1PJU A;  4HGU A;  1PPF I;  1PTQ A;  1AN1 I;  3HH2 C;  2V1C C;  1YU6 C;  3UGD A;  4JCV E;  2L8E A;  3VDU A;  3OXF A;  5FUV A;  3MEK A;  2NU2 I;  3KY9 A;  1TUR A;  1CHO I;  2GKT I;  1IY6 A;  2YUU A;  1HJA I;  5CCL A;  1OYV I;  1CT0 I;  1Z7K B;  2B0U C;  4B6D A;  3QTL D;  2KMO A;  1XBT A;  1M8C A;  3UFF A;  2ENZ A;  2F3C I;  2K9H A;  3RU0 A;  1XX6 A;  2OD1 A;  2V1C A;  2A20 A;  2KMP A;  4A24 A;  2DIP A;  1FYB A;  1OMT A;  1TOT A;  2ELI A;  2BUS A;  2NU3 I;  2NU0 I;  2QQC A;  2SGF I;  1X74 A;  2B8T A;  2QPO A;  1SGR I;  2QQE A;  5HI7 A;  2LUY A;  3UGI A;  4GI3 C;  1W4R A;  5EX0 A;  3SGB I;  3E59 A;  4UXJ A;  1LR7 A;  1TIH A;  1X4S A;  3OVO A;  3OXG A;  1UUC A;  2ORW A;  1HPT A;  2WCY A;  1CT2 I;  5HQ8 A;  4E1P A;  1R79 A;  2GVI A;  2JZM A;  1Y1B A;  3E2I A;  3SEK C;  1Y8F A;  1KBE A;  1CT4 I;  3TJQ A;  1TBN A;  1VDD A;  2ROW A;  2M5X A;  2ENN A;  2KMQ A;  2UZ3 A;  3OL0 A;  1TBQ R;  2JYY A;  3UEY A;  1OVO A;  1BUS A;  2GKR I;  2ODD A;  3QWP A;  2JW6 A;  1W3S A;  2N1A B;  4UXH A;  2GKV A;  1TGS I;  3VE5 A;  4FKD A;  1V1I A;  1LR9 A;  1DS3 I;  2QQD A;  1OMU A;  5JHW C;  2P6A C;  1CGJ I;  2W0T A;  1R0R I;  2XRC A;  1UVF A;  2JXD A;  3SGQ I;  1IY5 A;  5DAE A;  1H0Z A;  2N17 A;  3VDP A;  2CJS C;  2KCX A;  1XA6 A;  3D00 A;  1IW4 A;  2N71 A;  1CGI I;  1SGP I;  1NUB A;  1SGN I;  2J87 A;  5FUW A;  2ERW A;  1TBO A;  2LEO A;  2NU1 I;  3PDN A;  1SGY I;  1UVG A;  2E5R A;  2ORV A;  5FUX A;  1SGD I;  2QQ0 A;  1FAQ A;  2SGP I;  4UXI A;  1CE3 A;  1LR8 A;  1FAR A;  2V53 A;  1YTP A;  1RFH A;  3BJI A;  3UGL A;  2FNF X;  5EX3 A;  1TBR R;  2OVO A;  3GOX A;  2JA1 A;  1U5K A;  2KMR A;  5CCM A;  1DS2 I;  3UEJ A;  2ARP F;  2VRW B;  1N13 A;  2SGQ I;  2WVJ A;  5FUY A;  2SGE I;  1MT1 A;  2DB6 A;  3CXL A;  1HDL A;  3B4V C;  1V1H A;  3FC3 A;  4SGB I;  1KBF A;  1BMO A;  2YQP A;  2J9R A;  1TUS A;  1KMA A;  2N52 A;  1PCE A;  4L9M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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