The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
12
|
sequence length |
51
|
structure length |
51
|
Chain Sequence |
VDCSEYPKPACTIEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Deleterious effects of beta-branched residues in the S1 specificity pocket of Streptomyces griseus proteinase B (SGPB): crystal structures of the turkey ovomucoid third domain variants Ile18I, Val18I, Thr18I, and Ser18I in complex with SGPB.
pubmed rcsb |
| molecule keywords |
PROTEINASE B
|
| molecule tags |
Hydrolase/hydrolase inhibitor
|
| source organism |
Meleagris gallopavo
|
| total genus |
12
|
| structure length |
51
|
| sequence length |
51
|
| ec nomenclature | |
| pdb deposition date | 1999-08-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| I | PF00050 | Kazal_1 | Kazal-type serine protease inhibitor domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Wheat Germ Agglutinin (Isolectin 2); domain 1 |
#chains in the Genus database with same CATH superfamily 4GI3 C; 2NU2 I; 1YU6 C; 2N17 A; 1SGE I; 1OYV I; 1UVF A; 2GKT I; 1IY6 A; 1CSO I; 1TUR A; 1PPF I; 1HDL A; 1YTP A; 2KMO A; 2NU1 I; 1R0R I; 1M8B A; 4OVO A; 2KMQ A; 1MT1 A; 2B0U C; 2SGE I; 1DS2 I; 1SGQ I; 5DAE A; 2JZM A; 2KCX A; 1PCE A; 2KMR A; 2N52 A; 2SGQ I; 3QTL D; 3SGQ I; 3TJQ A; 1PJU A; 1SGN I; 1IW4 A; 2ERW A; 1KMA A; 2QQC A; 2ARP F; 1Y1B A; 1NUB A; 2SGP I; 1Z7K B; 2V53 A; 1OVO A; 4SGB I; 1CHO I; 1TBR R; 2QQD A; 1TBQ R; 1CGJ I; 3SGB I; 2GKV A; 1LR9 A; 2SGF I; 1OMT A; 2JXD A; 1SGR I; 1LR7 A; 1CGI I; 1TIH A; 2NU4 I; 1SGD I; 1CT2 I; 2LEO A; 3OVO A; 1TUS A; 1SGP I; 1HJA I; 2SGD I; 1DS3 I; 2M5X A; 1OMU A; 1HPT A; 2F3C I; 2JYY A; 5JHW C; 2XRC A; 1CT4 I; 1CE3 A; 1UUC A; 1BMO A; 1BUS A; 2NU3 I; 2P6A C; 1TGS I; 1SGY I; 2N71 A; 1Y1C A; 2NU0 I; 3HH2 C; 4HGU A; 1FYB A; 1CT0 I; 2KMP A; 3B4V C; 1UVG A; 3SEK C; 2OVO A; 1N13 A; 2BUS A; 1H0Z A; 2WCY A; 1LR8 A; 1IY5 A; 1AN1 I; 1M8C A; 2GKR I; #chains in the Genus database with same CATH topology 4GI3 C; 2NU2 I; 1K7T A; 2WGC A; 5E3R A; 1YU6 C; 2N17 A; 1MJA A; 1TOT A; 2ODD A; 5EX0 A; 3TOB A; 1PTQ A; 1SGE I; 1OYV I; 1TBN A; 4A24 A; 3QWP A; 4AML A; 1FAQ A; 2LB7 A; 1UVF A; 2N1A B; 2QQ0 A; 3KY9 A; 3OL0 A; 2GKT I; 3BJI A; 1IY6 A; 4JCV E; 2L8E A; 1CSO I; 1TUR A; 2UZ3 A; 3GOX A; 1PPF I; 1HDL A; 2OZU A; 1YTP A; 5E3Q A; 3TO9 A; 3PDN A; 2KMO A; 2NU1 I; 7WGA A; 1R0R I; 1MJB A; 1M8B A; 3VDP A; 1MJ9 A; 4OVO A; 1WGT A; 2KMQ A; 2YQP A; 4B6D A; 1MT1 A; 3TO7 A; 5J8F A; 1U5K A; 2B0U C; 2RC4 A; 1P9G A; 2SGE I; 2ELI A; 1K7U A; 2E5R A; 1DS2 I; 1SGQ I; 5FUX A; 3VE5 A; 5CCM A; 1KBE A; 5DAE A; 1NXU A; 2JZM A; 2B8T A; 4UXJ A; 2KCX A; 1PCE A; 2X52 A; 1ULK A; 2KMR A; 2K9H A; 2N52 A; 2OU2 A; 2SGQ I; 2WVJ A; 5FUW A; 3QTL D; 1Q9B A; 1XX6 A; 3TOA A; 3UEJ A; 5HQ8 A; 2V1C C; 2Y0M A; 2FNF X; 1WTJ A; 2V1C A; 3FSX A; 3SGQ I; 3TJQ A; 1PJU A; 2LUY A; 3UGD A; 2YUU A; 1SGN I; 1S20 A; 3UGI A; 4E1R A; 1IW4 A; 2ERW A; 1KMA A; 4L9M A; 2QQC A; 2ARP F; 1X74 A; 1NUB A; 1Y1B A; 2SGP I; 3D00 A; 1V1H A; 1Z7K B; 2V53 A; 1OVO A; 4SGB I; 5EX3 A; 4FKD A; 1CHO I; 2CWG A; 3UOE A; 1WGC A; 1WKX A; 1TBR R; 2DB6 A; 2QQD A; 1TBQ R; 5FUY A; 3R5A A; 1W3S A; 1HEV A; 1CGJ I; 3R5B A; 5FUV A; 3SGB I; 2GKV A; 3CXL A; 4UXH A; 1Y8F A; 1VDD A; 1R79 A; 1LR9 A; 2SGF I; 1OMT A; 1Z2I A; 1SGR I; 2CWH A; 2JXD A; 3UFF A; 1LR7 A; 3QAH A; 2X3T A; 1CGI I; 2ROW A; 1TIH A; 2NU4 I; 1SGD I; 1K7V A; 1CT2 I; 2JW6 A; 2E73 A; 2ENZ A; 2LEO A; 2QPO A; 1TUS A; 1SGP I; 3E59 A; 3OVO A; 3OXG A; 1KBF A; 3UGL A; 1HJA I; 2SGD I; 1DS3 I; 3R5C A; 2M5X A; 4UXI A; 1OMU A; 1HPT A; 2F3C I; 2JYY A; 3E2I A; 5JHW C; 3TO6 A; 3R5D A; 9WGA A; 2OD1 A; 2XRC A; 1CT4 I; 1W4R A; 1CE3 A; 1UUC A; 1BMO A; 3FSY A; 2UVO A; 2ORV A; 1BUS A; 2NU3 I; 2ENN A; 2P6A C; 1TGS I; 2GIV A; 1V1I A; 2DKV A; 2VRW B; 1PTR A; 1UHA A; 1SGY I; 4MPI A; 2A20 A; 4WP4 A; 1XBT A; 1Y1C A; 2N71 A; 1XA6 A; 2NU0 I; 3HH2 C; 4HGU A; 3VDU A; 3FC3 A; 1FYB A; 2QQE A; 2CWF A; 1CT0 I; 2PQ8 A; 2W0T A; 3UEY A; 4E1P A; 1TBO A; 1RFH A; 2KMP A; 2CJS C; 3RU0 A; 1X4S A; 3B4V C; 5CCL A; 1FY7 A; 2J9R A; 1FAR A; 1UVG A; 2DIP A; 2OVO A; 3OXF A; 3SEK C; 4DNC A; 1P9Z A; 1ULM A; 1N13 A; 2BUS A; 1H0Z A; 2WCY A; 1LR8 A; 2ORW A; 2GVI A; 1IY5 A; 2JA1 A; 1AN1 I; 1M8C A; 5J8C A; 2GKR I; 3MEK A; 5HI7 A; 5E3P A; 2L7X A; 1ULN A; 2RIJ A; 3OXL A; 2J87 A; #chains in the Genus database with same CATH homology 4GI3 C; 2NU2 I; 1YU6 C; 2N17 A; 1TOT A; 2ODD A; 5EX0 A; 1PTQ A; 1SGE I; 1OYV I; 1TBN A; 4A24 A; 3QWP A; 1FAQ A; 1UVF A; 2N1A B; 2QQ0 A; 3KY9 A; 3OL0 A; 2GKT I; 3BJI A; 1IY6 A; 4JCV E; 2L8E A; 1CSO I; 1TUR A; 2UZ3 A; 3GOX A; 1PPF I; 1HDL A; 1YTP A; 3PDN A; 2KMO A; 2NU1 I; 1R0R I; 1M8B A; 3VDP A; 4OVO A; 2KMQ A; 4B6D A; 2YQP A; 1MT1 A; 1U5K A; 2B0U C; 2SGE I; 2ELI A; 2E5R A; 1DS2 I; 1SGQ I; 5FUX A; 3VE5 A; 5CCM A; 1KBE A; 5DAE A; 2JZM A; 2B8T A; 4UXJ A; 2KCX A; 1PCE A; 2KMR A; 2N52 A; 2K9H A; 2SGQ I; 2WVJ A; 5FUW A; 5HQ8 A; 3QTL D; 3UEJ A; 1XX6 A; 2V1C C; 3SGQ I; 2FNF X; 2V1C A; 3TJQ A; 1PJU A; 2LUY A; 3UGD A; 2YUU A; 1SGN I; 3UGI A; 4E1R A; 1IW4 A; 2ERW A; 1KMA A; 4L9M A; 2QQC A; 2ARP F; 1Y1B A; 1X74 A; 1NUB A; 2SGP I; 3D00 A; 1V1H A; 1Z7K B; 2V53 A; 1OVO A; 4SGB I; 5EX3 A; 4FKD A; 1CHO I; 1TBR R; 2DB6 A; 2QQD A; 1TBQ R; 5FUY A; 1W3S A; 1CGJ I; 5FUV A; 3SGB I; 2GKV A; 3CXL A; 4UXH A; 1Y8F A; 1VDD A; 1R79 A; 1LR9 A; 2SGF I; 1OMT A; 2JXD A; 1SGR I; 3UFF A; 1LR7 A; 1CGI I; 2ROW A; 1TIH A; 2NU4 I; 1SGD I; 2JW6 A; 1CT2 I; 2LEO A; 2E73 A; 2ENZ A; 2QPO A; 3E59 A; 1TUS A; 1SGP I; 3OVO A; 3OXG A; 1KBF A; 3UGL A; 1HJA I; 2SGD I; 1DS3 I; 4UXI A; 2M5X A; 1OMU A; 1HPT A; 2F3C I; 2JYY A; 3E2I A; 5JHW C; 2OD1 A; 2XRC A; 1CT4 I; 1W4R A; 1CE3 A; 1UUC A; 1BMO A; 2ORV A; 1BUS A; 2NU3 I; 2ENN A; 2P6A C; 1TGS I; 1V1I A; 2VRW B; 1PTR A; 1SGY I; 2A20 A; 1XBT A; 1Y1C A; 2N71 A; 1XA6 A; 2NU0 I; 3HH2 C; 4HGU A; 3VDU A; 3FC3 A; 1FYB A; 2QQE A; 4E1P A; 1CT0 I; 2W0T A; 3UEY A; 1TBO A; 1RFH A; 2KMP A; 2CJS C; 3RU0 A; 1X4S A; 3B4V C; 5CCL A; 2J9R A; 1FAR A; 1UVG A; 2DIP A; 2OVO A; 3OXF A; 3SEK C; 1N13 A; 2BUS A; 1H0Z A; 2WCY A; 1LR8 A; 2ORW A; 2GVI A; 1IY5 A; 2JA1 A; 1AN1 I; 1M8C A; 2GKR I; 3MEK A; 5HI7 A; 2L7X A; 3OXL A; 2J87 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
