1CSOI

Crystal structure of the omtky3 p1 variant omtky3-ile18i in complex with sgpb
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
51
structure length
51
Chain Sequence
b'VDCSEYPKPACTIEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEINASE B
publication title Deleterious effects of beta-branched residues in the S1 specificity pocket of Streptomyces griseus proteinase B (SGPB): crystal structures of the turkey ovomucoid third domain variants Ile18I, Val18I, Thr18I, and Ser18I in complex with SGPB.
pubmed rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 12
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1csoI00
3QTLD 3SGBI 1HDLA 1PCEA 1PPFI 1SGPI 1YU6C 2ARPF 1HPTA 1OVOA 5JHWC 1SGRI 2GKRI 1CHOI 1R0RI 1OMUA 2N17A 2XRCA 2KMOA 2QQDA 1LR8A 2F3CI 1SGDI 2KMRA 2B0UC 5DAEA 2P6AC 1CSOI 4GI3C 2NU2I 1Y1BA 1M8CA 2KCXA 2JXDA 1IY5A 1OYVI 3TJQA 1PJUA 1TURA 1CT4I 1IW4A 1SGEI 1TBRR 1DS2I 2JYYA 3SEKC 2ERWA 2NU0I 2SGPI 1KMAA 2LEOA 2N71A 2NU4I 2WCYA 1CGJI 2KMPA 1AN1I 2SGQI 1TIHA 1SGYI 2QQCA 1BMOA 2SGFI 1FYBA 1TBQR 1UVFA 2N52A 3SGQI 2SGDI 2V53A 1BUSA 1MT1A 2OVOA 4SGBI 1UUCA 1CGII 3OVOA 1OMTA 2SGEI 1CE3A 1LR7A 1SGNI 1LR9A 2GKTI 1N13A 2NU1I 1YTPA 2M5XA 2GKVA 3HH2C 1H0ZA 1NUBA 1UVGA 2KMQA 2NU3I 2JZMA 1TUSA 1HJAI 4OVOA 4HGUA 1DS3I 1Y1CA 1SGQI 2BUSA 1Z7KB 1M8BA 1TGSI 1IY6A 3B4VC 1CT0I 1CT2I
chains in the Genus database with same CATH superfamily
3QTLD 1TBOA 3SGBI 3VDUA 2B8TA 1HDLA 1PCEA 1PPFI 3FSXA 4AMLA 2OD1A 3RU0A 1SGPI 3TO9A 1FAQA 2CWGA 3UFFA 1YU6C 3UOEA 1ULKA 2JA1A 2ARPF 2RIJA 1Z2IA 1K7TA 1HPTA 1OVOA 3BJIA 3R5CA 2L8EA 1TBNA 2VRWB 5JHWC 1V1IA 1SGRI 2GKRI 5CCMA 1CHOI 1R0RI 1KBEA 3OXFA 1OMUA 2N17A 2XRCA 2W0TA 2UZ3A 2KMOA 1XA6A 4E1RA 2QQDA 3UEYA 1LR8A 2F3CI 1K7VA 1SGDI 3UGIA 2GIVA 3UEJA 2ELIA 2KMRA 2DKVA 2A20A 2B0UC 3R5AA 2OZUA 1K7UA 1WGTA 3PDNA 5DAEA 2P6AC 1CSOI 4GI3C 1W4RA 1V1HA 2NU2I 1Y1BA 5E3PA 1M8CA 2ORVA 2KCXA 3OL0A 2X3TA 2JXDA 1IY5A 1OYVI 1X4SA 3TJQA 2DIPA 1PJUA 3TO7A 2GVIA 2K9HA 1TURA 1CT4I 1PTQA 4L9MA 5EX3A 1IW4A 3E2IA 1PTRA 1SGEI 5CCLA 1R79A 2ENNA 3TOAA 4UXJA 1TBRR 1ULMA 4FKDA 5E3QA 2E5RA 1DS2I 2QQEA 2JYYA 5E3RA 3SEKC 1MJBA 2ERWA 1ULNA 2ENZA 2RC4A 4E1PA 1IY6A 2UVOA 1FY7A 2V1CC 3UGDA 2NU0I 2SGPI 1KMAA 1UHAA 5HI7A 2LB7A 2V1CA 3TO6A 2LEOA 2N71A 2NU4I 2WCYA 2ROWA 4DNCA 1CGJI 2LUYA 1WTJA 2KMPA 1AN1I 2SGQI 1MJAA 1TIHA 2DB6A 1SGYI 2QQCA 1BMOA 2SGFI 4MPIA 2OU2A 1P9ZA 1FYBA 2CWFA 1Q9BA 1TBQR 1UVFA 2N52A 3SGQI 1X74A 1W3SA 2CWHA 2PQ8A 3FSYA 2JW6A 2SGDI 2WGCA 2V53A 7WGAA 4UXHA 1BUSA 1MT1A 2OVOA 3QAHA 1HEVA 1RFHA 4SGBI 1FARA 5FUWA 3TOBA 1UUCA 1CGII 3OVOA 1OMTA 1KBFA 2SGEI 1CE3A 3OXLA 2QPOA 1LR7A 1P9GA 1SGNI 1XX6A 1LR9A 2E73A 2GKTI 2YQPA 1WGCA 1NXUA 3KY9A 1N13A 2NU1I 1YTPA 2L7XA 2GKVA 2M5XA 3QWPA 1S20A 3CXLA 4WP4A 3HH2C 1U5KA 2Y0MA 2J87A 2ORWA 1H0ZA 5FUVA 2CJSC 3VE5A 2ODDA 2N1AB 1NUBA 1UVGA 3D00A 2KMQA 5HQ8A 9WGAA 3VDPA 2J9RA 2QQ0A 3MEKA 4JCVE 4A24A 2NU3I 1MJ9A 1TOTA 2JZMA 3FC3A 4B6DA 3GOXA 1TUSA 1WKXA 2X52A 1HJAI 5FUYA 4OVOA 2FNFX 3UGLA 1Y8FA 5EX0A 3OXGA 1DS3I 4HGUA 4UXIA 5J8FA 1Y1CA 1SGQI 2BUSA 3E59A 1VDDA 1XBTA 1M8BA 1Z7KB 3R5DA 5J8CA 1TGSI 5FUXA 3R5BA 3B4VC 1CT0I 2WVJA 2YUUA 1CT2I
chains in the Genus database with same CATH topology
3QTLD 1TBOA 3SGBI 3VDUA 2B8TA 1HDLA 1PCEA 1PPFI 2OD1A 3RU0A 1SGPI 1FAQA 3UFFA 1YU6C 2JA1A 2ARPF 1HPTA 1OVOA 3BJIA 2L8EA 1TBNA 2VRWB 5JHWC 1V1IA 1SGRI 2GKRI 5CCMA 1CHOI 1R0RI 1KBEA 3OXFA 1OMUA 2N17A 2XRCA 2W0TA 2UZ3A 2KMOA 1XA6A 4E1RA 2QQDA 3UEYA 1LR8A 2F3CI 1SGDI 3UGIA 3UEJA 2ELIA 2KMRA 2A20A 2B0UC 3PDNA 5DAEA 2P6AC 1CSOI 4GI3C 1W4RA 1V1HA 2NU2I 1Y1BA 1M8CA 2ORVA 2KCXA 3OL0A 2JXDA 1IY5A 1OYVI 1X4SA 3TJQA 2DIPA 1PJUA 2GVIA 2K9HA 1TURA 1CT4I 1PTQA 4L9MA 5EX3A 1IW4A 3E2IA 1PTRA 1SGEI 5CCLA 1R79A 2ENNA 4UXJA 1TBRR 4FKDA 2E5RA 1DS2I 2QQEA 2JYYA 3SEKC 2ERWA 2ENZA 4E1PA 2V1CC 3UGDA 2NU0I 2SGPI 1KMAA 5HI7A 2V1CA 2LEOA 2N71A 2NU4I 2WCYA 2ROWA 1CGJI 2LUYA 2KMPA 1AN1I 2SGQI 1TIHA 2DB6A 1SGYI 2QQCA 1BMOA 2SGFI 1FYBA 1TBQR 1UVFA 2N52A 3SGQI 1X74A 1W3SA 2JW6A 2SGDI 2V53A 4UXHA 1BUSA 1MT1A 2OVOA 1RFHA 4SGBI 1FARA 5FUWA 1KBFA 1UUCA 1CGII 3OVOA 1OMTA 2SGEI 1CE3A 3OXLA 2QPOA 1LR7A 1SGNI 1XX6A 1LR9A 2E73A 2GKTI 2YQPA 3KY9A 1N13A 2NU1I 1YTPA 2L7XA 2GKVA 2M5XA 3QWPA 3CXLA 3HH2C 1U5KA 2J87A 2ORWA 1H0ZA 5FUVA 2CJSC 3VE5A 2ODDA 2N1AB 1NUBA 1UVGA 3D00A 2KMQA 5HQ8A 3VDPA 2J9RA 2QQ0A 3MEKA 4JCVE 4A24A 2NU3I 1TOTA 2JZMA 3FC3A 4B6DA 3GOXA 1TUSA 1HJAI 5FUYA 4OVOA 2FNFX 3UGLA 1Y8FA 5EX0A 3OXGA 1DS3I 4HGUA 4UXIA 1Y1CA 1SGQI 2BUSA 3E59A 1VDDA 1XBTA 1M8BA 1Z7KB 1TGSI 5FUXA 1IY6A 3B4VC 1CT0I 2WVJA 2YUUA 1CT2I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QTL D;  3SGB I;  1HDL A;  1PCE A;  1PPF I;  1SGP I;  1YU6 C;  2ARP F;  1HPT A;  1OVO A;  5JHW C;  1SGR I;  2GKR I;  1CHO I;  1R0R I;  1OMU A;  2N17 A;  2XRC A;  2KMO A;  2QQD A;  1LR8 A;  2F3C I;  1SGD I;  2KMR A;  2B0U C;  5DAE A;  2P6A C;  1CSO I;  4GI3 C;  2NU2 I;  1Y1B A;  1M8C A;  2KCX A;  2JXD A;  1IY5 A;  1OYV I;  3TJQ A;  1PJU A;  1TUR A;  1CT4 I;  1IW4 A;  1SGE I;  1TBR R;  1DS2 I;  2JYY A;  3SEK C;  2ERW A;  2NU0 I;  2SGP I;  1KMA A;  2LEO A;  2N71 A;  2NU4 I;  2WCY A;  1CGJ I;  2KMP A;  1AN1 I;  2SGQ I;  1TIH A;  1SGY I;  2QQC A;  1BMO A;  2SGF I;  1FYB A;  1TBQ R;  1UVF A;  2N52 A;  3SGQ I;  2SGD I;  2V53 A;  1BUS A;  1MT1 A;  2OVO A;  4SGB I;  1UUC A;  1CGI I;  3OVO A;  1OMT A;  2SGE I;  1CE3 A;  1LR7 A;  1SGN I;  1LR9 A;  2GKT I;  1N13 A;  2NU1 I;  1YTP A;  2M5X A;  2GKV A;  3HH2 C;  1H0Z A;  1NUB A;  1UVG A;  2KMQ A;  2NU3 I;  2JZM A;  1TUS A;  1HJA I;  4OVO A;  4HGU A;  1DS3 I;  1Y1C A;  1SGQ I;  2BUS A;  1Z7K B;  1M8B A;  1TGS I;  1IY6 A;  3B4V C;  1CT0 I;  1CT2 I; 
#chains in the Genus database with same CATH topology
 3QTL D;  1TBO A;  3SGB I;  3VDU A;  2B8T A;  1HDL A;  1PCE A;  1PPF I;  3FSX A;  4AML A;  2OD1 A;  3RU0 A;  1SGP I;  3TO9 A;  1FAQ A;  2CWG A;  3UFF A;  1YU6 C;  3UOE A;  1ULK A;  2JA1 A;  2ARP F;  2RIJ A;  1Z2I A;  1K7T A;  1HPT A;  1OVO A;  3BJI A;  3R5C A;  2L8E A;  1TBN A;  2VRW B;  5JHW C;  1V1I A;  1SGR I;  2GKR I;  5CCM A;  1CHO I;  1R0R I;  1KBE A;  3OXF A;  1OMU A;  2N17 A;  2XRC A;  2W0T A;  2UZ3 A;  2KMO A;  1XA6 A;  4E1R A;  2QQD A;  3UEY A;  1LR8 A;  2F3C I;  1K7V A;  1SGD I;  3UGI A;  2GIV A;  3UEJ A;  2ELI A;  2KMR A;  2DKV A;  2A20 A;  2B0U C;  3R5A A;  2OZU A;  1K7U A;  1WGT A;  3PDN A;  5DAE A;  2P6A C;  1CSO I;  4GI3 C;  1W4R A;  1V1H A;  2NU2 I;  1Y1B A;  5E3P A;  1M8C A;  2ORV A;  2KCX A;  3OL0 A;  2X3T A;  2JXD A;  1IY5 A;  1OYV I;  1X4S A;  3TJQ A;  2DIP A;  1PJU A;  3TO7 A;  2GVI A;  2K9H A;  1TUR A;  1CT4 I;  1PTQ A;  4L9M A;  5EX3 A;  1IW4 A;  3E2I A;  1PTR A;  1SGE I;  5CCL A;  1R79 A;  2ENN A;  3TOA A;  4UXJ A;  1TBR R;  1ULM A;  4FKD A;  5E3Q A;  2E5R A;  1DS2 I;  2QQE A;  2JYY A;  5E3R A;  3SEK C;  1MJB A;  2ERW A;  1ULN A;  2ENZ A;  2RC4 A;  4E1P A;  1IY6 A;  2UVO A;  1FY7 A;  2V1C C;  3UGD A;  2NU0 I;  2SGP I;  1KMA A;  1UHA A;  5HI7 A;  2LB7 A;  2V1C A;  3TO6 A;  2LEO A;  2N71 A;  2NU4 I;  2WCY A;  2ROW A;  4DNC A;  1CGJ I;  2LUY A;  1WTJ A;  2KMP A;  1AN1 I;  2SGQ I;  1MJA A;  1TIH A;  2DB6 A;  1SGY I;  2QQC A;  1BMO A;  2SGF I;  4MPI A;  2OU2 A;  1P9Z A;  1FYB A;  2CWF A;  1Q9B A;  1TBQ R;  1UVF A;  2N52 A;  3SGQ I;  1X74 A;  1W3S A;  2CWH A;  2PQ8 A;  3FSY A;  2JW6 A;  2SGD I;  2WGC A;  2V53 A;  7WGA A;  4UXH A;  1BUS A;  1MT1 A;  2OVO A;  3QAH A;  1HEV A;  1RFH A;  4SGB I;  1FAR A;  5FUW A;  3TOB A;  1UUC A;  1CGI I;  3OVO A;  1OMT A;  1KBF A;  2SGE I;  1CE3 A;  3OXL A;  2QPO A;  1LR7 A;  1P9G A;  1SGN I;  1XX6 A;  1LR9 A;  2E73 A;  2GKT I;  2YQP A;  1WGC A;  1NXU A;  3KY9 A;  1N13 A;  2NU1 I;  1YTP A;  2L7X A;  2GKV A;  2M5X A;  3QWP A;  1S20 A;  3CXL A;  4WP4 A;  3HH2 C;  1U5K A;  2Y0M A;  2J87 A;  2ORW A;  1H0Z A;  5FUV A;  2CJS C;  3VE5 A;  2ODD A;  2N1A B;  1NUB A;  1UVG A;  3D00 A;  2KMQ A;  5HQ8 A;  9WGA A;  3VDP A;  2J9R A;  2QQ0 A;  3MEK A;  4JCV E;  4A24 A;  2NU3 I;  1MJ9 A;  1TOT A;  2JZM A;  3FC3 A;  4B6D A;  3GOX A;  1TUS A;  1WKX A;  2X52 A;  1HJA I;  5FUY A;  4OVO A;  2FNF X;  3UGL A;  1Y8F A;  5EX0 A;  3OXG A;  1DS3 I;  4HGU A;  4UXI A;  5J8F A;  1Y1C A;  1SGQ I;  2BUS A;  3E59 A;  1VDD A;  1XBT A;  1M8B A;  1Z7K B;  3R5D A;  5J8C A;  1TGS I;  5FUX A;  3R5B A;  3B4V C;  1CT0 I;  2WVJ A;  2YUU A;  1CT2 I; 
#chains in the Genus database with same CATH homology
 3QTL D;  1TBO A;  3SGB I;  3VDU A;  2B8T A;  1HDL A;  1PCE A;  1PPF I;  2OD1 A;  3RU0 A;  1SGP I;  1FAQ A;  3UFF A;  1YU6 C;  2JA1 A;  2ARP F;  1HPT A;  1OVO A;  3BJI A;  2L8E A;  1TBN A;  2VRW B;  5JHW C;  1V1I A;  1SGR I;  2GKR I;  5CCM A;  1CHO I;  1R0R I;  1KBE A;  3OXF A;  1OMU A;  2N17 A;  2XRC A;  2W0T A;  2UZ3 A;  2KMO A;  1XA6 A;  4E1R A;  2QQD A;  3UEY A;  1LR8 A;  2F3C I;  1SGD I;  3UGI A;  3UEJ A;  2ELI A;  2KMR A;  2A20 A;  2B0U C;  3PDN A;  5DAE A;  2P6A C;  1CSO I;  4GI3 C;  1W4R A;  1V1H A;  2NU2 I;  1Y1B A;  1M8C A;  2ORV A;  2KCX A;  3OL0 A;  2JXD A;  1IY5 A;  1OYV I;  1X4S A;  3TJQ A;  2DIP A;  1PJU A;  2GVI A;  2K9H A;  1TUR A;  1CT4 I;  1PTQ A;  4L9M A;  5EX3 A;  1IW4 A;  3E2I A;  1PTR A;  1SGE I;  5CCL A;  1R79 A;  2ENN A;  4UXJ A;  1TBR R;  4FKD A;  2E5R A;  1DS2 I;  2QQE A;  2JYY A;  3SEK C;  2ERW A;  2ENZ A;  4E1P A;  2V1C C;  3UGD A;  2NU0 I;  2SGP I;  1KMA A;  5HI7 A;  2V1C A;  2LEO A;  2N71 A;  2NU4 I;  2WCY A;  2ROW A;  1CGJ I;  2LUY A;  2KMP A;  1AN1 I;  2SGQ I;  1TIH A;  2DB6 A;  1SGY I;  2QQC A;  1BMO A;  2SGF I;  1FYB A;  1TBQ R;  1UVF A;  2N52 A;  3SGQ I;  1X74 A;  1W3S A;  2JW6 A;  2SGD I;  2V53 A;  4UXH A;  1BUS A;  1MT1 A;  2OVO A;  1RFH A;  4SGB I;  1FAR A;  5FUW A;  1KBF A;  1UUC A;  1CGI I;  3OVO A;  1OMT A;  2SGE I;  1CE3 A;  3OXL A;  2QPO A;  1LR7 A;  1SGN I;  1XX6 A;  1LR9 A;  2E73 A;  2GKT I;  2YQP A;  3KY9 A;  1N13 A;  2NU1 I;  1YTP A;  2L7X A;  2GKV A;  2M5X A;  3QWP A;  3CXL A;  3HH2 C;  1U5K A;  2J87 A;  2ORW A;  1H0Z A;  5FUV A;  2CJS C;  3VE5 A;  2ODD A;  2N1A B;  1NUB A;  1UVG A;  3D00 A;  2KMQ A;  5HQ8 A;  3VDP A;  2J9R A;  2QQ0 A;  3MEK A;  4JCV E;  4A24 A;  2NU3 I;  1TOT A;  2JZM A;  3FC3 A;  4B6D A;  3GOX A;  1TUS A;  1HJA I;  5FUY A;  4OVO A;  2FNF X;  3UGL A;  1Y8F A;  5EX0 A;  3OXG A;  1DS3 I;  4HGU A;  4UXI A;  1Y1C A;  1SGQ I;  2BUS A;  3E59 A;  1VDD A;  1XBT A;  1M8B A;  1Z7K B;  1TGS I;  5FUX A;  1IY6 A;  3B4V C;  1CT0 I;  2WVJ A;  2YUU A;  1CT2 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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