1CTFA

Structure of the c-terminal domain of the ribosomal protein l7/l12 from escherichia coli at 1.7 angstroms
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
68
structure length
68
Chain Sequence
EFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosomal protein
molecule keywords RIBOSOMAL PROTEIN L7/L12
publication title Structure of the C-terminal domain of the ribosomal protein L7/L12 from Escherichia coli at 1.7 A.
pubmed doi rcsb
source organism Escherichia coli
total genus 21
structure length 68
sequence length 68
ec nomenclature
pdb deposition date 1986-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00542 Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1ctfA00
3O1FB 1RQVA 3O2OA 1MBUC 3O2HA 3GQ0A 1DD4A 1MBXC 3O1FA 3O2BA 1R6OC 4YKAA 1RQSA 3G1BA 2WA9A 1DD3A 4YJXA 1LZWA 1MG9A 2W9RA 4YJMA 3G3PA 3GQ1A 2WA8A 1CTFA 1MBVB 1R6QC 3G19A 1RQUA 3DNJA 3GW1A
chains in the Genus database with same CATH superfamily
5M18A 3O1FB 1RQVA 5DM6W 1BXYA 3CCSW 1VQOW 1M90X 3O2HA 4IOCW 3GQ0A 3CF5W 5M1AA 1MWTA 3D3IA 3CMEW 1K9MX 5GAGa 1W2BV 1YJ9W 3PIPW 1VQNW 3CC4W 2WA9A 3ZG0A 1YHQW 1LZWA 1YIJW 1K8AX 1VQ9W 4IO9W 4CJNA 2OTJW 2WA8A 3W7WA 1VQPW 1R6QC 1VQ4W 1RQUA 3GW1A 1S72W 5DM7W 1KD1X 3O2OA 1MWUA 5GAEa 1MBUC 5JVHW 3I55W 1VQ8W 3CCJW 3O2BA 3J7ZZ 1RQSA 3G1BA 1VQQA 1DD3A 5GADa 3CC7W 4WFBW 2W9RA 4YJMA 3OW2V 3CCQW 5JVGW 1YITW 4WCEW 3CCRW 1VQKW 3ZFZA 1CTFA 3G19A 1QVGV 4WFAW 3G4SW 4WF9W 1M1KX 5GW7A 5CA3A 5HL7W 4UY8Z 1MWSA 1QVFV 1VQLW 3G6EW 1DD4A 3G71W 3CD6W 1MBXC 1VQMW 3I56W 1YJNW 3CCLW 3CCVW 2OTLW 1VQ5W 1YJWW 1VQ7W 1VQ6W 5GAHa 1KC8X 3CCUW 4YJXA 3CXCV 1MG9A 4DKIA 2QA4W 3GQ1A 4IOAW 4BL2A 1MBVB 1KQSV 3DLLW 5M19A 4U67W 1JJ2V 2ZJRW 1MWRA 3CCEW 3PIOW 1Q81X 4CPKA 3O1FA 1Q82X 3CC2W 2ZJPW 1R6OC 3CCMW 3W7UA 4YKAA 1Q7YX 3W7TA 1K73X 3W7XA 3ZG5A 4WFNW 2QEXW 3CPWV 1YI2W 3G3PA 3CMAW 4BL3A 2ZJQW 1NJIX 1Q86X 3W7SA 1N8RX 3DNJA
chains in the Genus database with same CATH topology
3O1FB 1RQVA 3O2OA 1MBUC 3O2HA 3GQ0A 1DD4A 1MBXC 3O1FA 3O2BA 1R6OC 4YKAA 1RQSA 3G1BA 2WA9A 1DD3A 4YJXA 1LZWA 1MG9A 2W9RA 4YJMA 3G3PA 3GQ1A 2WA8A 1CTFA 1MBVB 1R6QC 3G19A 1RQUA 3DNJA 3GW1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O1F B;  1RQV A;  3O2O A;  1MBU C;  3O2H A;  3GQ0 A;  1DD4 A;  1MBX C;  3O1F A;  3O2B A;  1R6O C;  4YKA A;  1RQS A;  3G1B A;  2WA9 A;  1DD3 A;  4YJX A;  1LZW A;  1MG9 A;  2W9R A;  4YJM A;  3G3P A;  3GQ1 A;  2WA8 A;  1CTF A;  1MBV B;  1R6Q C;  3G19 A;  1RQU A;  3DNJ A;  3GW1 A; 
#chains in the Genus database with same CATH topology
 5M18 A;  3O1F B;  1RQV A;  5DM6 W;  1BXY A;  3CCS W;  1VQO W;  1M90 X;  3O2H A;  4IOC W;  3GQ0 A;  3CF5 W;  5M1A A;  1MWT A;  3D3I A;  3CME W;  1K9M X;  5GAG a;  1W2B V;  1YJ9 W;  3PIP W;  1VQN W;  3CC4 W;  2WA9 A;  3ZG0 A;  1YHQ W;  1LZW A;  1YIJ W;  1K8A X;  1VQ9 W;  4IO9 W;  4CJN A;  2OTJ W;  2WA8 A;  3W7W A;  1VQP W;  1R6Q C;  1VQ4 W;  1RQU A;  3GW1 A;  1S72 W;  5DM7 W;  1KD1 X;  3O2O A;  1MWU A;  5GAE a;  1MBU C;  5JVH W;  3I55 W;  1VQ8 W;  3CCJ W;  3O2B A;  3J7Z Z;  1RQS A;  3G1B A;  1VQQ A;  1DD3 A;  5GAD a;  3CC7 W;  4WFB W;  2W9R A;  4YJM A;  3OW2 V;  3CCQ W;  5JVG W;  1YIT W;  4WCE W;  3CCR W;  1VQK W;  3ZFZ A;  1CTF A;  3G19 A;  1QVG V;  4WFA W;  3G4S W;  4WF9 W;  1M1K X;  5GW7 A;  5CA3 A;  5HL7 W;  4UY8 Z;  1MWS A;  1QVF V;  1VQL W;  3G6E W;  1DD4 A;  3G71 W;  3CD6 W;  1MBX C;  1VQM W;  3I56 W;  1YJN W;  3CCL W;  3CCV W;  2OTL W;  1VQ5 W;  1YJW W;  1VQ7 W;  1VQ6 W;  5GAH a;  1KC8 X;  3CCU W;  4YJX A;  3CXC V;  1MG9 A;  4DKI A;  2QA4 W;  3GQ1 A;  4IOA W;  4BL2 A;  1MBV B;  1KQS V;  3DLL W;  5M19 A;  4U67 W;  1JJ2 V;  2ZJR W;  1MWR A;  3CCE W;  3PIO W;  1Q81 X;  4CPK A;  3O1F A;  1Q82 X;  3CC2 W;  2ZJP W;  1R6O C;  3CCM W;  3W7U A;  4YKA A;  1Q7Y X;  3W7T A;  1K73 X;  3W7X A;  3ZG5 A;  4WFN W;  2QEX W;  3CPW V;  1YI2 W;  3G3P A;  3CMA W;  4BL3 A;  2ZJQ W;  1NJI X;  1Q86 X;  3W7S A;  1N8R X;  3DNJ A; 
#chains in the Genus database with same CATH homology
 3O1F B;  1RQV A;  3O2O A;  1MBU C;  3O2H A;  3GQ0 A;  1DD4 A;  1MBX C;  3O1F A;  3O2B A;  1R6O C;  4YKA A;  1RQS A;  3G1B A;  2WA9 A;  1DD3 A;  4YJX A;  1LZW A;  1MG9 A;  2W9R A;  4YJM A;  3G3P A;  3GQ1 A;  2WA8 A;  1CTF A;  1MBV B;  1R6Q C;  3G19 A;  1RQU A;  3DNJ A;  3GW1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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