1CTSA

Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7 angstroms resolution
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
437
structure length
437
Chain Sequence
ASSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7 A resolution.
pubmed doi rcsb
molecule tags Oxo-acid-lyase
source organism Sus scrofa
molecule keywords CITRATE SYNTHASE
total genus 132
structure length 437
sequence length 437
ec nomenclature ec 2.3.3.1: Citrate (Si)-synthase.
pdb deposition date 1984-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00285 Citrate_synt Citrate synthase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.230.10 Mainly Alpha Orthogonal Bundle Cytochrome p450-Terp; domain 2 Cytochrome P450-Terp, domain 2 1ctsA02
1.10.580.10 Mainly Alpha Orthogonal Bundle Citrate Synthase; domain 1 Citrate Synthase, domain 1 1ctsA01
1OWCA 1AL6A 1CSCA 3MSUA 5CSCB 1IXEA 1VGPA 1IOMA 1CSRA 4TVMA 4XGHA 2IFCA 2IBPA 2C6XA 2H12A 5CTSA 1NXEA 4JAGA 1NXGA 3TQGA 4JADA 6CSCA 2R26A 3HWKA 6CTSA 4G6BA 4E6YA 1CTSA 1AMZA 1CSSA 1CSIA 5CSCA 3O8JA 3ENJA 3CSCA 2P2WA 1AJ8A 4YBOA 1CSHA 1A59A 1VGMA 1O7XA 2R9EA 4CTSA 4JAEA 4CSCA 4JAFA 2CTSA 2CSCA 1OWBA
chains in the Genus database with same CATH superfamily
1OWCA 1AL6A 1CSCA 3MSUA 5CSCB 1IXEA 1VGPA 1IOMA 1CSRA 4TVMA 4XGHA 2IFCA 2IBPA 2C6XA 2H12A 5CTSA 1NXEA 4JAGA 1NXGA 3TQGA 4JADA 6CSCA 2R26A 3HWKA 6CTSA 4G6BA 4E6YA 1CTSA 1AMZA 1CSSA 1CSIA 5CSCA 3O8JA 3ENJA 3CSCA 2P2WA 1AJ8A 4YBOA 1CSHA 1A59A 1VGMA 1O7XA 2R9EA 4CTSA 4JAEA 4CSCA 4JAFA 2CTSA 2CSCA 1OWBA
chains in the Genus database with same CATH topology
1OWCA 1AL6A 1CSCA 3MSUA 5CSCB 1IXEA 1VGPA 1IOMA 1CSRA 4TVMA 4XGHA 2IFCA 2IBPA 2C6XA 2H12A 5CTSA 1NXEA 4JAGA 1NXGA 3TQGA 4JADA 6CSCA 2R26A 3HWKA 6CTSA 4G6BA 4E6YA 1CTSA 1AMZA 1CSSA 1CSIA 5CSCA 3O8JA 3ENJA 3CSCA 2P2WA 1AJ8A 4YBOA 1CSHA 1A59A 1VGMA 1O7XA 2R9EA 4CTSA 4JAEA 4CSCA 4JAFA 2CTSA 2CSCA 1OWBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OWC A;  1AL6 A;  1CSC A;  3MSU A;  5CSC B;  1IXE A;  1VGP A;  1IOM A;  1CSR A;  4TVM A;  4XGH A;  2IFC A;  2IBP A;  2C6X A;  2H12 A;  5CTS A;  1NXE A;  4JAG A;  1NXG A;  3TQG A;  4JAD A;  6CSC A;  2R26 A;  3HWK A;  6CTS A;  4G6B A;  4E6Y A;  1CTS A;  1AMZ A;  1CSS A;  1CSI A;  5CSC A;  3O8J A;  3ENJ A;  3CSC A;  2P2W A;  1AJ8 A;  4YBO A;  1CSH A;  1A59 A;  1VGM A;  1O7X A;  2R9E A;  4CTS A;  4JAE A;  4CSC A;  4JAF A;  2CTS A;  2CSC A;  1OWB A; 
#chains in the Genus database with same CATH topology
 1OWC A;  1AL6 A;  1CSC A;  3MSU A;  5CSC B;  1IXE A;  1VGP A;  1IOM A;  1CSR A;  4TVM A;  4XGH A;  2IFC A;  2IBP A;  2C6X A;  2H12 A;  5CTS A;  1NXE A;  4JAG A;  1NXG A;  3TQG A;  4JAD A;  6CSC A;  2R26 A;  3HWK A;  6CTS A;  4G6B A;  4E6Y A;  1CTS A;  1AMZ A;  1CSS A;  1CSI A;  5CSC A;  3O8J A;  3ENJ A;  3CSC A;  2P2W A;  1AJ8 A;  4YBO A;  1CSH A;  1A59 A;  1VGM A;  1O7X A;  2R9E A;  4CTS A;  4JAE A;  4CSC A;  4JAF A;  2CTS A;  2CSC A;  1OWB A; 
#chains in the Genus database with same CATH homology
 1OWC A;  1AL6 A;  1CSC A;  3MSU A;  5CSC B;  1IXE A;  1VGP A;  1IOM A;  1CSR A;  4TVM A;  4XGH A;  2IFC A;  2IBP A;  2C6X A;  2H12 A;  5CTS A;  1NXE A;  4JAG A;  1NXG A;  3TQG A;  4JAD A;  6CSC A;  2R26 A;  3HWK A;  6CTS A;  4G6B A;  4E6Y A;  1CTS A;  1AMZ A;  1CSS A;  1CSI A;  5CSC A;  3O8J A;  3ENJ A;  3CSC A;  2P2W A;  1AJ8 A;  4YBO A;  1CSH A;  1A59 A;  1VGM A;  1O7X A;  2R9E A;  4CTS A;  4JAE A;  4CSC A;  4JAF A;  2CTS A;  2CSC A;  1OWB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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