1CW0A

Crystal structure analysis of very short patch repair (vsr) endonuclease in complex with a duplex dna
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
155
structure length
155
Chain Sequence
ADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA (5'-D(*AP*CP*GP*TP*AP*CP*CP*TP*GP*GP*CP*T)-3')
publication title Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex.
pubmed doi rcsb
source organism Escherichia coli
total genus 52
structure length 155
sequence length 155
ec nomenclature ec 3.1.-.-:
pdb deposition date 1999-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03852 Vsr DNA mismatch endonuclease Vsr
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.960.10 Alpha Beta 3-Layer(aba) Sandwich Endonuclease; Chain A VSR Endonuclease 1cw0A00
1ODGA 3R3PA 1CW0A 1VSRA 3HRLA
chains in the Genus database with same CATH superfamily
5BPIA 1BYSA 1V0RA 1V0TA 3SQ8A 1RG2A 1RGTA 4GEMA 1RFFA 1MU9A 3QPHA 5BPDA 5BQTA 3SQ3A 4GGJA 4A5ZA 1CW0A 1RFIA 4GELA 3SQ5A 1JY1A 1XDPA 1V0WA 2ZE4A 5LZKA 1RG1A 1BYRA 1Q32A 2O8RA 3HRLA 1NOPA 1F0IA 2F5TX 4RCTA 1ODGA 1V0YA 4H4AA 1QZQA 1V0SA 3HSIA 1RH0A 4GGKA 2YMBA 3SQ7A 1RGUA 2ZE9A 3R3PA 5BOXA 2C1LA 1V0VA 1XDOA 4GENA 1V0UA 1MU7A 1VSRA 4URJA
chains in the Genus database with same CATH topology
1ODGA 3R3PA 1CW0A 1VSRA 3HRLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ODG A;  3R3P A;  1CW0 A;  1VSR A;  3HRL A; 
#chains in the Genus database with same CATH topology
 5BPI A;  1BYS A;  1V0R A;  1V0T A;  3SQ8 A;  1RG2 A;  1RGT A;  4GEM A;  1RFF A;  1MU9 A;  3QPH A;  5BPD A;  5BQT A;  3SQ3 A;  4GGJ A;  4A5Z A;  1CW0 A;  1RFI A;  4GEL A;  3SQ5 A;  1JY1 A;  1XDP A;  1V0W A;  2ZE4 A;  5LZK A;  1RG1 A;  1BYR A;  1Q32 A;  2O8R A;  3HRL A;  1NOP A;  1F0I A;  2F5T X;  4RCT A;  1ODG A;  1V0Y A;  4H4A A;  1QZQ A;  1V0S A;  3HSI A;  1RH0 A;  4GGK A;  2YMB A;  3SQ7 A;  1RGU A;  2ZE9 A;  3R3P A;  5BOX A;  2C1L A;  1V0V A;  1XDO A;  4GEN A;  1V0U A;  1MU7 A;  1VSR A;  4URJ A; 
#chains in the Genus database with same CATH homology
 1ODG A;  3R3P A;  1CW0 A;  1VSR A;  3HRL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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