1CXRA

Automated 2d noesy assignment and structure calculation of crambin(s22/i25) with self-correcting distance geometry based noah/diamod programs
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
46
structure length
46
Chain Sequence
TTCCPSIVARSNFNVCRLPGTSEAICATYTGCIIIPGATCPGDYAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords CRAMBIN
publication title Automated 2D NOESY assignment and structure calculation of Crambin(S22/I25) with the self-correcting distance geometry based NOAH/DIAMOD programs.
pubmed doi rcsb
total genus 8
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 1999-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1cxrA00
1CCNA 1CXRA 3NIRA 1AB1A 2EYAA 3UE7B 1JMPA 1CCMA 1JXYA 1ORLA 2V9BA 2EYCA 1JMNA 1JXTA 2FD7A 1CRNA 1YVAA 1CNRA 3SZSA 1ED0A 3C8PA 1NBLA 2EYBA 1EJGA 1WUWA 1OKHA 1JXXA 2FD9A 3U7TA 2PLHA 1CBNA 4FC1A 1JXWA 1JXUA 1YV8A 1BHPA 2EYDA
chains in the Genus database with same CATH superfamily
1FOUA 1CCNA 1JNBA 1CXRA 1H5WA 3NIRA 1AB1A 2EYAA 3UE7B 1JMPA 1CCMA 1JXYA 1ORLA 2V9BA 2EYCA 1IJGA 1JMNA 1JXTA 2FD7A 1CRNA 1CNRA 1YVAA 3SZSA 1ED0A 3C8PA 1NBLA 2EYBA 1EJGA 1WUWA 1OKHA 1JXXA 2FD9A 3U7TA 2PLHA 1CBNA 4FC1A 1JXWA 1JXUA 1YV8A 1BHPA 2EYDA
chains in the Genus database with same CATH topology
1CCNA 1CXRA 3NIRA 1AB1A 2EYAA 3UE7B 1JMPA 1CCMA 1JXYA 1ORLA 2V9BA 2EYCA 1JMNA 1JXTA 2FD7A 1CRNA 1YVAA 1CNRA 3SZSA 1ED0A 3C8PA 1NBLA 2EYBA 1EJGA 1WUWA 1OKHA 1JXXA 2FD9A 3U7TA 2PLHA 1CBNA 4FC1A 1JXWA 1JXUA 1YV8A 1BHPA 2EYDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CCN A;  1CXR A;  3NIR A;  1AB1 A;  2EYA A;  3UE7 B;  1JMP A;  1CCM A;  1JXY A;  1ORL A;  2V9B A;  2EYC A;  1JMN A;  1JXT A;  2FD7 A;  1CRN A;  1YVA A;  1CNR A;  3SZS A;  1ED0 A;  3C8P A;  1NBL A;  2EYB A;  1EJG A;  1WUW A;  1OKH A;  1JXX A;  2FD9 A;  3U7T A;  2PLH A;  1CBN A;  4FC1 A;  1JXW A;  1JXU A;  1YV8 A;  1BHP A;  2EYD A; 
#chains in the Genus database with same CATH topology
 1FOU A;  1CCN A;  1JNB A;  1CXR A;  1H5W A;  3NIR A;  1AB1 A;  2EYA A;  3UE7 B;  1JMP A;  1CCM A;  1JXY A;  1ORL A;  2V9B A;  2EYC A;  1IJG A;  1JMN A;  1JXT A;  2FD7 A;  1CRN A;  1CNR A;  1YVA A;  3SZS A;  1ED0 A;  3C8P A;  1NBL A;  2EYB A;  1EJG A;  1WUW A;  1OKH A;  1JXX A;  2FD9 A;  3U7T A;  2PLH A;  1CBN A;  4FC1 A;  1JXW A;  1JXU A;  1YV8 A;  1BHP A;  2EYD A; 
#chains in the Genus database with same CATH homology
 1CCN A;  1CXR A;  3NIR A;  1AB1 A;  2EYA A;  3UE7 B;  1JMP A;  1CCM A;  1JXY A;  1ORL A;  2V9B A;  2EYC A;  1JMN A;  1JXT A;  2FD7 A;  1CRN A;  1YVA A;  1CNR A;  3SZS A;  1ED0 A;  3C8P A;  1NBL A;  2EYB A;  1EJG A;  1WUW A;  1OKH A;  1JXX A;  2FD9 A;  3U7T A;  2PLH A;  1CBN A;  4FC1 A;  1JXW A;  1JXU A;  1YV8 A;  1BHP A;  2EYD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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