1CY5A

Crystal structure of the apaf-1 card
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
92
structure length
92
Chain Sequence
MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords PROTEIN (APOPTOTIC PROTEASE ACTIVATING FACTOR 1)
publication title Crystal structure of Apaf-1 caspase recruitment domain: an alpha-helical Greek key fold for apoptotic signaling.
pubmed doi rcsb
source organism Homo sapiens
total genus 34
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 1999-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1cy5A00
2O71A 2MS7A 2YGSA 2OF5H 2D96A 1A1WA 3LQQA 2DBHA 4I16A 4JQWA 1C15A 4M9XA 2G7RA 2L9MA 1Z6TA 2N00A 2YU0A 1NGRA 3MOPG 4P4HA 4FH0A 4N1LA 4A2WA 2B1WA 4ZBWA 2DBFA 4A2QA 4JUPA 2DO9A 1D2ZA 1YGOA 1DDFA 3CL3A 1UCPA 1E41A 3J63A 2P1HA 1WXPA 2BBZA 2YVIA 4M9SA 4NQKA 4UZ0A 3LQRA 1E3YA 2DBGA 3KATA 2M5VA 3YGSC 2NAQA 4LWDA 3EZQA 1PN5A 1FADA 4O9LA 2MPCA 1WMGA 2KM6A 2L6AA 4O9FA 3YGSP 2N7ZA 4QOBA 1D2ZB 2DBDA 4N1JA 2OF5A 2N1FA 2YQFA 4IZ7B 3T6PA 2LWEA 2N80A 2N83A 1ICHA 2NSNA 3QF2A 2NZ7A 1WH4A 4RHWE 1CWWA 2VGQA 3EZQB 2KN6A 3CRDA 2HM2Q 4EWIA 4DWNA 4D8OA 2A9IA 3MOPA 4M9ZA 1N3KA 4F44A 2IB1A 4N1KA 1A1ZA 2BBRA 4IZ5E 4O6XA 4P4HI 2MN4A 4O7QA 2GF5A 2LWDA 4IZAB 2LS7A 4F42A 2N97A 1DGNA 2MB9A 2F1SA 2A5YB 3J6JA 2MS8A 4E9MA 4RHWA 3MOPK 1CY5A
chains in the Genus database with same CATH superfamily
2O71A 2MS7A 2YGSA 2OF5H 2D96A 1A1WA 3LQQA 2DBHA 4I16A 4JQWA 1C15A 4M9XA 2G7RA 2L9MA 1Z6TA 2N00A 2YU0A 1NGRA 3MOPG 4P4HA 4FH0A 4N1LA 4A2WA 2B1WA 4ZBWA 2DBFA 4A2QA 4JUPA 2DO9A 1D2ZA 1YGOA 1DDFA 3CL3A 1UCPA 1E41A 3J63A 2P1HA 1WXPA 2BBZA 2YVIA 4M9SA 4NQKA 2XV9A 4UZ0A 3LQRA 1E3YA 2DBGA 3KATA 2M5VA 3YGSC 2NAQA 4LWDA 3EZQA 1PN5A 1FADA 4O9LA 2MPCA 1WMGA 2KM6A 2L6AA 4O9FA 3YGSP 2N7ZA 4QOBA 1D2ZB 2DBDA 4N1JA 2OF5A 2N1FA 2YQFA 4IZ7B 3T6PA 2LWEA 2N80A 2N83A 1ICHA 2NSNA 3QF2A 2NZ7A 1WH4A 4RHWE 1CWWA 2VGQA 3EZQB 3CRDA 2KN6A 2MJMA 2HM2Q 4EWIA 4DWNA 4D8OA 2A9IA 3MOPA 4M9ZA 1N3KA 4F44A 2IB1A 4N1KA 1A1ZA 2BBRA 4IZ5E 4O6XA 4P4HI 2MN4A 4O7QA 2GF5A 2LWDA 4IZAB 2LS7A 4F42A 2N97A 1DGNA 2MB9A 2F1SA 2A5YB 3J6JA 2MS8A 4E9MA 4RHWA 3MOPK 1CY5A
chains in the Genus database with same CATH topology
2O71A 2MS7A 2YGSA 2OF5H 2D96A 1A1WA 3LQQA 2DBHA 4I16A 4JQWA 1C15A 4M9XA 2G7RA 2L9MA 1Z6TA 2N00A 2YU0A 1NGRA 3MOPG 4P4HA 4FH0A 4N1LA 4A2WA 2B1WA 4ZBWA 2DBFA 4A2QA 4JUPA 2DO9A 1D2ZA 1YGOA 1DDFA 3CL3A 1UCPA 1E41A 3J63A 2P1HA 1WXPA 2BBZA 2YVIA 4M9SA 4NQKA 2XV9A 4UZ0A 3LQRA 1E3YA 2DBGA 3KATA 2M5VA 3YGSC 2NAQA 4LWDA 3EZQA 1PN5A 1FADA 4O9LA 2MPCA 1WMGA 2KM6A 2L6AA 4O9FA 3YGSP 2N7ZA 4QOBA 1D2ZB 2DBDA 4N1JA 2OF5A 2N1FA 2YQFA 4IZ7B 3T6PA 2LWEA 2N80A 2N83A 1ICHA 2NSNA 3QF2A 2NZ7A 1WH4A 4RHWE 1CWWA 2VGQA 3EZQB 3CRDA 2KN6A 2MJMA 2HM2Q 4EWIA 4DWNA 4D8OA 2A9IA 3MOPA 4M9ZA 1N3KA 4F44A 2IB1A 4N1KA 1A1ZA 2BBRA 4IZ5E 4O6XA 4P4HI 2MN4A 4O7QA 2GF5A 2LWDA 4IZAB 2LS7A 4F42A 2N97A 1DGNA 2MB9A 2F1SA 2A5YB 3J6JA 2MS8A 4E9MA 4RHWA 3MOPK 1CY5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O71 A;  2MS7 A;  2YGS A;  2OF5 H;  2D96 A;  1A1W A;  3LQQ A;  2DBH A;  4I16 A;  4JQW A;  1C15 A;  4M9X A;  2G7R A;  2L9M A;  1Z6T A;  2N00 A;  2YU0 A;  1NGR A;  3MOP G;  4P4H A;  4FH0 A;  4N1L A;  4A2W A;  2B1W A;  4ZBW A;  2DBF A;  4A2Q A;  4JUP A;  2DO9 A;  1D2Z A;  1YGO A;  1DDF A;  3CL3 A;  1UCP A;  1E41 A;  3J63 A;  2P1H A;  1WXP A;  2BBZ A;  2YVI A;  4M9S A;  4NQK A;  4UZ0 A;  3LQR A;  1E3Y A;  2DBG A;  3KAT A;  2M5V A;  3YGS C;  2NAQ A;  4LWD A;  3EZQ A;  1PN5 A;  1FAD A;  4O9L A;  2MPC A;  1WMG A;  2KM6 A;  2L6A A;  4O9F A;  3YGS P;  2N7Z A;  4QOB A;  1D2Z B;  2DBD A;  4N1J A;  2OF5 A;  2N1F A;  2YQF A;  4IZ7 B;  3T6P A;  2LWE A;  2N80 A;  2N83 A;  1ICH A;  2NSN A;  3QF2 A;  2NZ7 A;  1WH4 A;  4RHW E;  1CWW A;  2VGQ A;  3EZQ B;  2KN6 A;  3CRD A;  2HM2 Q;  4EWI A;  4DWN A;  4D8O A;  2A9I A;  3MOP A;  4M9Z A;  1N3K A;  4F44 A;  2IB1 A;  4N1K A;  1A1Z A;  2BBR A;  4IZ5 E;  4O6X A;  4P4H I;  2MN4 A;  4O7Q A;  2GF5 A;  2LWD A;  4IZA B;  2LS7 A;  4F42 A;  2N97 A;  1DGN A;  2MB9 A;  2F1S A;  2A5Y B;  3J6J A;  2MS8 A;  4E9M A;  4RHW A;  3MOP K;  1CY5 A; 
#chains in the Genus database with same CATH topology
 2O71 A;  2MS7 A;  2YGS A;  2OF5 H;  2D96 A;  1A1W A;  3LQQ A;  2DBH A;  4I16 A;  4JQW A;  1C15 A;  4M9X A;  2G7R A;  2L9M A;  1Z6T A;  2N00 A;  2YU0 A;  1NGR A;  3MOP G;  4P4H A;  4FH0 A;  4N1L A;  4A2W A;  2B1W A;  4ZBW A;  2DBF A;  4A2Q A;  4JUP A;  2DO9 A;  1D2Z A;  1YGO A;  1DDF A;  3CL3 A;  1UCP A;  1E41 A;  3J63 A;  2P1H A;  1WXP A;  2BBZ A;  2YVI A;  4M9S A;  4NQK A;  2XV9 A;  4UZ0 A;  3LQR A;  1E3Y A;  2DBG A;  3KAT A;  2M5V A;  3YGS C;  2NAQ A;  4LWD A;  3EZQ A;  1PN5 A;  1FAD A;  4O9L A;  2MPC A;  1WMG A;  2KM6 A;  2L6A A;  4O9F A;  3YGS P;  2N7Z A;  4QOB A;  1D2Z B;  2DBD A;  4N1J A;  2OF5 A;  2N1F A;  2YQF A;  4IZ7 B;  3T6P A;  2LWE A;  2N80 A;  2N83 A;  1ICH A;  2NSN A;  3QF2 A;  2NZ7 A;  1WH4 A;  4RHW E;  1CWW A;  2VGQ A;  3EZQ B;  3CRD A;  2KN6 A;  2MJM A;  2HM2 Q;  4EWI A;  4DWN A;  4D8O A;  2A9I A;  3MOP A;  4M9Z A;  1N3K A;  4F44 A;  2IB1 A;  4N1K A;  1A1Z A;  2BBR A;  4IZ5 E;  4O6X A;  4P4H I;  2MN4 A;  4O7Q A;  2GF5 A;  2LWD A;  4IZA B;  2LS7 A;  4F42 A;  2N97 A;  1DGN A;  2MB9 A;  2F1S A;  2A5Y B;  3J6J A;  2MS8 A;  4E9M A;  4RHW A;  3MOP K;  1CY5 A; 
#chains in the Genus database with same CATH homology
 2O71 A;  2MS7 A;  2YGS A;  2OF5 H;  2D96 A;  1A1W A;  3LQQ A;  2DBH A;  4I16 A;  4JQW A;  1C15 A;  4M9X A;  2G7R A;  2L9M A;  1Z6T A;  2N00 A;  2YU0 A;  1NGR A;  3MOP G;  4P4H A;  4FH0 A;  4N1L A;  4A2W A;  2B1W A;  4ZBW A;  2DBF A;  4A2Q A;  4JUP A;  2DO9 A;  1D2Z A;  1YGO A;  1DDF A;  3CL3 A;  1UCP A;  1E41 A;  3J63 A;  2P1H A;  1WXP A;  2BBZ A;  2YVI A;  4M9S A;  4NQK A;  2XV9 A;  4UZ0 A;  3LQR A;  1E3Y A;  2DBG A;  3KAT A;  2M5V A;  3YGS C;  2NAQ A;  4LWD A;  3EZQ A;  1PN5 A;  1FAD A;  4O9L A;  2MPC A;  1WMG A;  2KM6 A;  2L6A A;  4O9F A;  3YGS P;  2N7Z A;  4QOB A;  1D2Z B;  2DBD A;  4N1J A;  2OF5 A;  2N1F A;  2YQF A;  4IZ7 B;  3T6P A;  2LWE A;  2N80 A;  2N83 A;  1ICH A;  2NSN A;  3QF2 A;  2NZ7 A;  1WH4 A;  4RHW E;  1CWW A;  2VGQ A;  3EZQ B;  3CRD A;  2KN6 A;  2MJM A;  2HM2 Q;  4EWI A;  4DWN A;  4D8O A;  2A9I A;  3MOP A;  4M9Z A;  1N3K A;  4F44 A;  2IB1 A;  4N1K A;  1A1Z A;  2BBR A;  4IZ5 E;  4O6X A;  4P4H I;  2MN4 A;  4O7Q A;  2GF5 A;  2LWD A;  4IZA B;  2LS7 A;  4F42 A;  2N97 A;  1DGN A;  2MB9 A;  2F1S A;  2A5Y B;  3J6J A;  2MS8 A;  4E9M A;  4RHW A;  3MOP K;  1CY5 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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