1D0NA

The crystal structure of calcium-free equine plasma gelsolin.
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
729
structure length
729
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGGQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWSVDPLDRALAELAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Contractile protein
molecule keywords HORSE PLASMA GELSOLIN
publication title The crystal structure of plasma gelsolin: implications for actin severing, capping, and nucleation.
pubmed doi rcsb
total genus 198
structure length 729
sequence length 729
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA02
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA01
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA04
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA06
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA05
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA03
4PKIG 3EGDA 4PKHB 3FFNA 2LJ8A 1NM1G 1D0NA 1ESVS 2W0IA 4Z94G 1M2OA 5KYWB 1TMWA 1PD1A 1X67A 2FH4A 1YVNG 3A5LS 1WM4A 5FAFA 1AK7A 1MDUA 1F7SA 1NPHA 2MOTA 3A5OS 2FH1A 1WFSA 1COFA 2NUPA 1NLVG 3CIPG 1Q8GA 1C0GS 3A5MS 5KYWA 2HD7A 1YAGG 4KEDA 1AHQA 1C0FS 1CNUA 1VFQA 1SVRA 1WNJA 2VACA 3CI5G 5DD2A 3FG7A 1Q8XA 5KYXA 2MP4A 1UDMA 2I2QA 2FH2A 1KCQA 4JD2H 1NMDG 4LIZA 5KYXB 5HVKB 2KVKA 2NUTA 1CFYA 4KEEA 1JHWA 4CBXG 1EQYS 5FAEA 1AK6A 4KEFA 3EH1A 2LLFA 1HQZ1 3EFOB 1SVYA 1J72A 1PD0A 4CBUG 5A1MA 1RGIG 1QPVA 5KYUA 1VKKA 1P8ZG 2FF3A 1H1VG 1M2VA 1P8XA 1V6FA 2D8BA 2LXXA 3FFKA 2VIKA 5HVKD 5KYUB 1M4JA 1M2VB 4S10C 2XF1A 2XFAA 2FGHA 4BEX1 4CBWG 1D4XG 3FG6A 3TU5B 4PKGG 2NUTB 3EFOA 3EGDB 2VILA 3EH2A 3Q2BA 1T3XA 1TVJA 2L72A 1SVQA 3EG9A 3A5NS 2MV2A 3EGXA 3EG9B 3CJBG 3EGXB 5KYYA 1T44G 3DAWB 3L50A 1DEJS 5L6WC 2QTVA 1T2LA 2FF6G 5KYYB 5IVUA 1PCXA 2FH3A 5KYNA 1T3YA 3CJCG 2NUPB
chains in the Genus database with same CATH superfamily
4PKIG 3EGDA 4PKHB 3FFNA 2LJ8A 1NM1G 1D0NA 1ESVS 2W0IA 4Z94G 1M2OA 5KYWB 1TMWA 1PD1A 1X67A 2FH4A 1YVNG 3A5LS 1WM4A 5FAFA 1AK7A 1MDUA 1F7SA 1NPHA 2MOTA 3A5OS 2FH1A 1WFSA 1COFA 2NUPA 1NLVG 3CIPG 1Q8GA 3DA7A 1C0GS 3A5MS 5KYWA 2HD7A 1YAGG 4KEDA 1AHQA 1C0FS 1CNUA 1VFQA 1SVRA 1WNJA 2VACA 3CI5G 5DD2A 3FG7A 1Q8XA 5KYXA 2MP4A 1UDMA 2I2QA 2FH2A 1KCQA 4JD2H 1NMDG 4LIZA 5KYXB 5HVKB 2KVKA 2NUTA 1CFYA 4KEEA 1JHWA 4CBXG 1EQYS 5FAEA 1AK6A 4KEFA 3EH1A 2LLFA 1HQZ1 3EFOB 1SVYA 1J72A 1PD0A 4CBUG 5A1MA 1RGIG 1QPVA 5KYUA 1VKKA 1P8ZG 2FF3A 1H1VG 1M2VA 1P8XA 1V6FA 2D8BA 2LXXA 3FFKA 2VIKA 5HVKD 5KYUB 1M4JA 1M2VB 4S10C 2XF1A 2XFAA 2FGHA 4BEX1 4CBWG 1D4XG 3FG6A 3TU5B 4PKGG 2NUTB 3EFOA 3EGDB 2VILA 3EH2A 3Q2BA 1T3XA 1TVJA 2L72A 1SVQA 3EG9A 3A5NS 2MV2A 3EGXA 3EG9B 3CJBG 3EGXB 5KYYA 1T44G 3DAWB 3L50A 1DEJS 5L6WC 2QTVA 1T2LA 2FF6G 5KYYB 5IVUA 1PCXA 2FH3A 5KYNA 1T3YA 3CJCG 2NUPB
chains in the Genus database with same CATH topology
4PKIG 3EGDA 4PKHB 3FFNA 2LJ8A 1NM1G 1D0NA 1ESVS 2W0IA 4Z94G 1M2OA 5KYWB 1TMWA 1PD1A 1X67A 2FH4A 1YVNG 3A5LS 1WM4A 5FAFA 1AK7A 1MDUA 1F7SA 1NPHA 2MOTA 3A5OS 2FH1A 1WFSA 1COFA 2NUPA 1NLVG 3CIPG 1Q8GA 3DA7A 1C0GS 3A5MS 5KYWA 2HD7A 1YAGG 4KEDA 1AHQA 1C0FS 1CNUA 1VFQA 1SVRA 1WNJA 2VACA 3CI5G 5DD2A 3FG7A 1Q8XA 5KYXA 2MP4A 1UDMA 2I2QA 2FH2A 1KCQA 4JD2H 1NMDG 4LIZA 5KYXB 5HVKB 2KVKA 2NUTA 1CFYA 4KEEA 1JHWA 4CBXG 1EQYS 5FAEA 1AK6A 4KEFA 3EH1A 2LLFA 1HQZ1 3EFOB 1SVYA 1J72A 1PD0A 4CBUG 5A1MA 1RGIG 1QPVA 5KYUA 1VKKA 1P8ZG 2FF3A 1H1VG 1M2VA 1P8XA 1V6FA 2D8BA 2LXXA 3FFKA 2VIKA 5HVKD 5KYUB 1M4JA 1M2VB 4S10C 2XF1A 2XFAA 2FGHA 4BEX1 4CBWG 1D4XG 3FG6A 3TU5B 4PKGG 2NUTB 3EFOA 3EGDB 2VILA 3EH2A 3Q2BA 1T3XA 1TVJA 2L72A 1SVQA 3EG9A 3A5NS 2MV2A 3EGXA 3EG9B 3CJBG 3EGXB 5KYYA 1T44G 3DAWB 3L50A 1DEJS 5L6WC 2QTVA 1T2LA 2FF6G 5KYYB 5IVUA 1PCXA 2FH3A 5KYNA 1T3YA 3CJCG 2NUPB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PKI G;  3EGD A;  4PKH B;  3FFN A;  2LJ8 A;  1NM1 G;  1D0N A;  1ESV S;  2W0I A;  4Z94 G;  1M2O A;  5KYW B;  1TMW A;  1PD1 A;  1X67 A;  2FH4 A;  1YVN G;  3A5L S;  1WM4 A;  5FAF A;  1AK7 A;  1MDU A;  1F7S A;  1NPH A;  2MOT A;  3A5O S;  2FH1 A;  1WFS A;  1COF A;  2NUP A;  1NLV G;  3CIP G;  1Q8G A;  1C0G S;  3A5M S;  5KYW A;  2HD7 A;  1YAG G;  4KED A;  1AHQ A;  1C0F S;  1CNU A;  1VFQ A;  1SVR A;  1WNJ A;  2VAC A;  3CI5 G;  5DD2 A;  3FG7 A;  1Q8X A;  5KYX A;  2MP4 A;  1UDM A;  2I2Q A;  2FH2 A;  1KCQ A;  4JD2 H;  1NMD G;  4LIZ A;  5KYX B;  5HVK B;  2KVK A;  2NUT A;  1CFY A;  4KEE A;  1JHW A;  4CBX G;  1EQY S;  5FAE A;  1AK6 A;  4KEF A;  3EH1 A;  2LLF A;  1HQZ 1;  3EFO B;  1SVY A;  1J72 A;  1PD0 A;  4CBU G;  5A1M A;  1RGI G;  1QPV A;  5KYU A;  1VKK A;  1P8Z G;  2FF3 A;  1H1V G;  1M2V A;  1P8X A;  1V6F A;  2D8B A;  2LXX A;  3FFK A;  2VIK A;  5HVK D;  5KYU B;  1M4J A;  1M2V B;  4S10 C;  2XF1 A;  2XFA A;  2FGH A;  4BEX 1;  4CBW G;  1D4X G;  3FG6 A;  3TU5 B;  4PKG G;  2NUT B;  3EFO A;  3EGD B;  2VIL A;  3EH2 A;  3Q2B A;  1T3X A;  1TVJ A;  2L72 A;  1SVQ A;  3EG9 A;  3A5N S;  2MV2 A;  3EGX A;  3EG9 B;  3CJB G;  3EGX B;  5KYY A;  1T44 G;  3DAW B;  3L50 A;  1DEJ S;  5L6W C;  2QTV A;  1T2L A;  2FF6 G;  5KYY B;  5IVU A;  1PCX A;  2FH3 A;  5KYN A;  1T3Y A;  3CJC G;  2NUP B; 
#chains in the Genus database with same CATH topology
 4PKI G;  3EGD A;  4PKH B;  3FFN A;  2LJ8 A;  1NM1 G;  1D0N A;  1ESV S;  2W0I A;  4Z94 G;  1M2O A;  5KYW B;  1TMW A;  1PD1 A;  1X67 A;  2FH4 A;  1YVN G;  3A5L S;  1WM4 A;  5FAF A;  1AK7 A;  1MDU A;  1F7S A;  1NPH A;  2MOT A;  3A5O S;  2FH1 A;  1WFS A;  1COF A;  2NUP A;  1NLV G;  3CIP G;  1Q8G A;  3DA7 A;  1C0G S;  3A5M S;  5KYW A;  2HD7 A;  1YAG G;  4KED A;  1AHQ A;  1C0F S;  1CNU A;  1VFQ A;  1SVR A;  1WNJ A;  2VAC A;  3CI5 G;  5DD2 A;  3FG7 A;  1Q8X A;  5KYX A;  2MP4 A;  1UDM A;  2I2Q A;  2FH2 A;  1KCQ A;  4JD2 H;  1NMD G;  4LIZ A;  5KYX B;  5HVK B;  2KVK A;  2NUT A;  1CFY A;  4KEE A;  1JHW A;  4CBX G;  1EQY S;  5FAE A;  1AK6 A;  4KEF A;  3EH1 A;  2LLF A;  1HQZ 1;  3EFO B;  1SVY A;  1J72 A;  1PD0 A;  4CBU G;  5A1M A;  1RGI G;  1QPV A;  5KYU A;  1VKK A;  1P8Z G;  2FF3 A;  1H1V G;  1M2V A;  1P8X A;  1V6F A;  2D8B A;  2LXX A;  3FFK A;  2VIK A;  5HVK D;  5KYU B;  1M4J A;  1M2V B;  4S10 C;  2XF1 A;  2XFA A;  2FGH A;  4BEX 1;  4CBW G;  1D4X G;  3FG6 A;  3TU5 B;  4PKG G;  2NUT B;  3EFO A;  3EGD B;  2VIL A;  3EH2 A;  3Q2B A;  1T3X A;  1TVJ A;  2L72 A;  1SVQ A;  3EG9 A;  3A5N S;  2MV2 A;  3EGX A;  3EG9 B;  3CJB G;  3EGX B;  5KYY A;  1T44 G;  3DAW B;  3L50 A;  1DEJ S;  5L6W C;  2QTV A;  1T2L A;  2FF6 G;  5KYY B;  5IVU A;  1PCX A;  2FH3 A;  5KYN A;  1T3Y A;  3CJC G;  2NUP B; 
#chains in the Genus database with same CATH homology
 4PKI G;  3EGD A;  4PKH B;  3FFN A;  2LJ8 A;  1NM1 G;  1D0N A;  1ESV S;  2W0I A;  4Z94 G;  1M2O A;  5KYW B;  1TMW A;  1PD1 A;  1X67 A;  2FH4 A;  1YVN G;  3A5L S;  1WM4 A;  5FAF A;  1AK7 A;  1MDU A;  1F7S A;  1NPH A;  2MOT A;  3A5O S;  2FH1 A;  1WFS A;  1COF A;  2NUP A;  1NLV G;  3CIP G;  1Q8G A;  3DA7 A;  1C0G S;  3A5M S;  5KYW A;  2HD7 A;  1YAG G;  4KED A;  1AHQ A;  1C0F S;  1CNU A;  1VFQ A;  1SVR A;  1WNJ A;  2VAC A;  3CI5 G;  5DD2 A;  3FG7 A;  1Q8X A;  5KYX A;  2MP4 A;  1UDM A;  2I2Q A;  2FH2 A;  1KCQ A;  4JD2 H;  1NMD G;  4LIZ A;  5KYX B;  5HVK B;  2KVK A;  2NUT A;  1CFY A;  4KEE A;  1JHW A;  4CBX G;  1EQY S;  5FAE A;  1AK6 A;  4KEF A;  3EH1 A;  2LLF A;  1HQZ 1;  3EFO B;  1SVY A;  1J72 A;  1PD0 A;  4CBU G;  5A1M A;  1RGI G;  1QPV A;  5KYU A;  1VKK A;  1P8Z G;  2FF3 A;  1H1V G;  1M2V A;  1P8X A;  1V6F A;  2D8B A;  2LXX A;  3FFK A;  2VIK A;  5HVK D;  5KYU B;  1M4J A;  1M2V B;  4S10 C;  2XF1 A;  2XFA A;  2FGH A;  4BEX 1;  4CBW G;  1D4X G;  3FG6 A;  3TU5 B;  4PKG G;  2NUT B;  3EFO A;  3EGD B;  2VIL A;  3EH2 A;  3Q2B A;  1T3X A;  1TVJ A;  2L72 A;  1SVQ A;  3EG9 A;  3A5N S;  2MV2 A;  3EGX A;  3EG9 B;  3CJB G;  3EGX B;  5KYY A;  1T44 G;  3DAW B;  3L50 A;  1DEJ S;  5L6W C;  2QTV A;  1T2L A;  2FF6 G;  5KYY B;  5IVU A;  1PCX A;  2FH3 A;  5KYN A;  1T3Y A;  3CJC G;  2NUP B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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