1D0NA

The crystal structure of calcium-free equine plasma gelsolin.
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
729
structure length
729
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGGQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWSVDPLDRALAELAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Contractile protein
molecule keywords HORSE PLASMA GELSOLIN
publication title The crystal structure of plasma gelsolin: implications for actin severing, capping, and nucleation.
pubmed doi rcsb
total genus 198
structure length 729
sequence length 729
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA02
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA01
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA04
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA06
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA05
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA03
2FGHA 1X67A 1TVJA 1H1VG 2HD7A 2XF1A 1ESVS 1T3YA 1J72A 1NLVG 3EFOA 5KYYB 1M2OA 1EQYS 1SVQA 1C0FS 3CJCG 2LLFA 5IVUA 3A5NS 4CBUG 1DEJS 4BEX1 1NMDG 3EGXA 1M2VA 1NM1G 3EFOB 5KYWB 2FF3A 1V6FA 1HQZ1 2QTVA 1SVYA 1T44G 2L72A 5L6WC 3A5LS 5KYUA 2NUPA 5FAEA 1TMWA 1UDMA 1AHQA 1D4XG 3EGXB 4PKHB 5KYWA 1M2VB 2VILA 1QPVA 2XFAA 3CIPG 1PCXA 4CBXG 1CNUA 3EG9A 4Z94G 3A5OS 4LIZA 1Q8GA 1JHWA 3DAWB 1WFSA 5KYNA 5KYUB 2NUPB 1YAGG 3Q2BA 1T2LA 1T3XA 2NUTA 3A5MS 5DD2A 4JD2H 5HVKD 3EH2A 4PKIG 4CBWG 2LXXA 2MV2A 5KYXA 4KEDA 3EG9B 1RGIG 1F7SA 1WNJA 1C0GS 5A1MA 1PD1A 2NUTB 4KEFA 3TU5B 2FH1A 3EH1A 2FH2A 1MDUA 1Q8XA 2FH3A 2MOTA 5HVKB 1AK6A 5KYXB 1KCQA 1COFA 1YVNG 2W0IA 2D8BA 2MP4A 1SVRA 3FFKA 1D0NA 1PD0A 4PKGG 2KVKA 3FG6A 1VKKA 1CFYA 5FAFA 1P8ZG 4S10C 1WM4A 1NPHA 3CI5G 1VFQA 3EGDA 2FF6G 2VACA 2I2QA 1AK7A 3FG7A 3FFNA 2LJ8A 2VIKA 3L50A 2FH4A 5KYYA 3CJBG 1P8XA 1M4JA 4KEEA 3EGDB
chains in the Genus database with same CATH superfamily
2FGHA 1X67A 1TVJA 1H1VG 2HD7A 2XF1A 1ESVS 1T3YA 1J72A 1NLVG 3EFOA 5KYYB 1M2OA 1EQYS 1SVQA 1C0FS 3CJCG 2LLFA 5IVUA 3A5NS 4CBUG 1DEJS 4BEX1 1NMDG 3EGXA 1M2VA 1NM1G 3EFOB 5KYWB 2FF3A 1V6FA 1HQZ1 2QTVA 1SVYA 1T44G 2L72A 5L6WC 3A5LS 5KYUA 2NUPA 5FAEA 1TMWA 1UDMA 1AHQA 1D4XG 3EGXB 4PKHB 5KYWA 1M2VB 2VILA 1QPVA 2XFAA 3CIPG 1PCXA 4CBXG 1CNUA 3EG9A 4Z94G 3A5OS 4LIZA 1Q8GA 1JHWA 3DAWB 1WFSA 5KYNA 5KYUB 2NUPB 1YAGG 3Q2BA 1T2LA 1T3XA 2NUTA 3A5MS 5DD2A 4JD2H 5HVKD 3EH2A 4PKIG 4CBWG 2LXXA 2MV2A 5KYXA 4KEDA 3EG9B 1RGIG 1F7SA 1WNJA 1C0GS 5A1MA 1PD1A 2NUTB 4KEFA 3TU5B 2FH1A 3EH1A 2FH2A 1MDUA 1Q8XA 2FH3A 2MOTA 5HVKB 1AK6A 5KYXB 1KCQA 1COFA 1YVNG 2W0IA 2D8BA 2MP4A 1SVRA 3FFKA 1D0NA 1PD0A 4PKGG 2KVKA 3FG6A 1VKKA 1CFYA 5FAFA 1P8ZG 4S10C 1WM4A 1NPHA 3CI5G 1VFQA 3EGDA 2FF6G 2VACA 2I2QA 1AK7A 3FG7A 3FFNA 2LJ8A 2VIKA 3L50A 2FH4A 5KYYA 3CJBG 1P8XA 1M4JA 4KEEA 3EGDB 3DA7A
chains in the Genus database with same CATH topology
2FGHA 1X67A 1TVJA 1H1VG 2HD7A 2XF1A 1ESVS 1T3YA 1J72A 1NLVG 3EFOA 5KYYB 1M2OA 1EQYS 1SVQA 1C0FS 3CJCG 2LLFA 5IVUA 3A5NS 4CBUG 1DEJS 4BEX1 1NMDG 3EGXA 1M2VA 1NM1G 3EFOB 5KYWB 2FF3A 1V6FA 1HQZ1 2QTVA 1SVYA 1T44G 2L72A 5L6WC 3A5LS 5KYUA 2NUPA 5FAEA 1TMWA 1UDMA 1AHQA 1D4XG 3EGXB 4PKHB 5KYWA 1M2VB 2VILA 1QPVA 2XFAA 3CIPG 1PCXA 4CBXG 1CNUA 3EG9A 4Z94G 3A5OS 4LIZA 1Q8GA 1JHWA 3DAWB 1WFSA 5KYNA 5KYUB 2NUPB 1YAGG 3Q2BA 1T2LA 1T3XA 2NUTA 3A5MS 5DD2A 4JD2H 5HVKD 3EH2A 4PKIG 4CBWG 2LXXA 2MV2A 5KYXA 4KEDA 3EG9B 1RGIG 1F7SA 1WNJA 1C0GS 5A1MA 1PD1A 2NUTB 4KEFA 3TU5B 2FH1A 3EH1A 2FH2A 1MDUA 1Q8XA 2FH3A 2MOTA 5HVKB 1AK6A 5KYXB 1KCQA 1COFA 1YVNG 2W0IA 2D8BA 2MP4A 1SVRA 3FFKA 1D0NA 1PD0A 4PKGG 2KVKA 3FG6A 1VKKA 1CFYA 5FAFA 1P8ZG 4S10C 1WM4A 1NPHA 3CI5G 1VFQA 3EGDA 2FF6G 2VACA 2I2QA 1AK7A 3FG7A 3FFNA 2LJ8A 2VIKA 3L50A 2FH4A 5KYYA 3CJBG 1P8XA 1M4JA 4KEEA 3EGDB 3DA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FGH A;  1X67 A;  1TVJ A;  1H1V G;  2HD7 A;  2XF1 A;  1ESV S;  1T3Y A;  1J72 A;  1NLV G;  3EFO A;  5KYY B;  1M2O A;  1EQY S;  1SVQ A;  1C0F S;  3CJC G;  2LLF A;  5IVU A;  3A5N S;  4CBU G;  1DEJ S;  4BEX 1;  1NMD G;  3EGX A;  1M2V A;  1NM1 G;  3EFO B;  5KYW B;  2FF3 A;  1V6F A;  1HQZ 1;  2QTV A;  1SVY A;  1T44 G;  2L72 A;  5L6W C;  3A5L S;  5KYU A;  2NUP A;  5FAE A;  1TMW A;  1UDM A;  1AHQ A;  1D4X G;  3EGX B;  4PKH B;  5KYW A;  1M2V B;  2VIL A;  1QPV A;  2XFA A;  3CIP G;  1PCX A;  4CBX G;  1CNU A;  3EG9 A;  4Z94 G;  3A5O S;  4LIZ A;  1Q8G A;  1JHW A;  3DAW B;  1WFS A;  5KYN A;  5KYU B;  2NUP B;  1YAG G;  3Q2B A;  1T2L A;  1T3X A;  2NUT A;  3A5M S;  5DD2 A;  4JD2 H;  5HVK D;  3EH2 A;  4PKI G;  4CBW G;  2LXX A;  2MV2 A;  5KYX A;  4KED A;  3EG9 B;  1RGI G;  1F7S A;  1WNJ A;  1C0G S;  5A1M A;  1PD1 A;  2NUT B;  4KEF A;  3TU5 B;  2FH1 A;  3EH1 A;  2FH2 A;  1MDU A;  1Q8X A;  2FH3 A;  2MOT A;  5HVK B;  1AK6 A;  5KYX B;  1KCQ A;  1COF A;  1YVN G;  2W0I A;  2D8B A;  2MP4 A;  1SVR A;  3FFK A;  1D0N A;  1PD0 A;  4PKG G;  2KVK A;  3FG6 A;  1VKK A;  1CFY A;  5FAF A;  1P8Z G;  4S10 C;  1WM4 A;  1NPH A;  3CI5 G;  1VFQ A;  3EGD A;  2FF6 G;  2VAC A;  2I2Q A;  1AK7 A;  3FG7 A;  3FFN A;  2LJ8 A;  2VIK A;  3L50 A;  2FH4 A;  5KYY A;  3CJB G;  1P8X A;  1M4J A;  4KEE A;  3EGD B; 
#chains in the Genus database with same CATH topology
 2FGH A;  1X67 A;  1TVJ A;  1H1V G;  2HD7 A;  2XF1 A;  1ESV S;  1T3Y A;  1J72 A;  1NLV G;  3EFO A;  5KYY B;  1M2O A;  1EQY S;  1SVQ A;  1C0F S;  3CJC G;  2LLF A;  5IVU A;  3A5N S;  4CBU G;  1DEJ S;  4BEX 1;  1NMD G;  3EGX A;  1M2V A;  1NM1 G;  3EFO B;  5KYW B;  2FF3 A;  1V6F A;  1HQZ 1;  2QTV A;  1SVY A;  1T44 G;  2L72 A;  5L6W C;  3A5L S;  5KYU A;  2NUP A;  5FAE A;  1TMW A;  1UDM A;  1AHQ A;  1D4X G;  3EGX B;  4PKH B;  5KYW A;  1M2V B;  2VIL A;  1QPV A;  2XFA A;  3CIP G;  1PCX A;  4CBX G;  1CNU A;  3EG9 A;  4Z94 G;  3A5O S;  4LIZ A;  1Q8G A;  1JHW A;  3DAW B;  1WFS A;  5KYN A;  5KYU B;  2NUP B;  1YAG G;  3Q2B A;  1T2L A;  1T3X A;  2NUT A;  3A5M S;  5DD2 A;  4JD2 H;  5HVK D;  3EH2 A;  4PKI G;  4CBW G;  2LXX A;  2MV2 A;  5KYX A;  4KED A;  3EG9 B;  1RGI G;  1F7S A;  1WNJ A;  1C0G S;  5A1M A;  1PD1 A;  2NUT B;  4KEF A;  3TU5 B;  2FH1 A;  3EH1 A;  2FH2 A;  1MDU A;  1Q8X A;  2FH3 A;  2MOT A;  5HVK B;  1AK6 A;  5KYX B;  1KCQ A;  1COF A;  1YVN G;  2W0I A;  2D8B A;  2MP4 A;  1SVR A;  3FFK A;  1D0N A;  1PD0 A;  4PKG G;  2KVK A;  3FG6 A;  1VKK A;  1CFY A;  5FAF A;  1P8Z G;  4S10 C;  1WM4 A;  1NPH A;  3CI5 G;  1VFQ A;  3EGD A;  2FF6 G;  2VAC A;  2I2Q A;  1AK7 A;  3FG7 A;  3FFN A;  2LJ8 A;  2VIK A;  3L50 A;  2FH4 A;  5KYY A;  3CJB G;  1P8X A;  1M4J A;  4KEE A;  3EGD B;  3DA7 A; 
#chains in the Genus database with same CATH homology
 2FGH A;  1X67 A;  1TVJ A;  1H1V G;  2HD7 A;  2XF1 A;  1ESV S;  1T3Y A;  1J72 A;  1NLV G;  3EFO A;  5KYY B;  1M2O A;  1EQY S;  1SVQ A;  1C0F S;  3CJC G;  2LLF A;  5IVU A;  3A5N S;  4CBU G;  1DEJ S;  4BEX 1;  1NMD G;  3EGX A;  1M2V A;  1NM1 G;  3EFO B;  5KYW B;  2FF3 A;  1V6F A;  1HQZ 1;  2QTV A;  1SVY A;  1T44 G;  2L72 A;  5L6W C;  3A5L S;  5KYU A;  2NUP A;  5FAE A;  1TMW A;  1UDM A;  1AHQ A;  1D4X G;  3EGX B;  4PKH B;  5KYW A;  1M2V B;  2VIL A;  1QPV A;  2XFA A;  3CIP G;  1PCX A;  4CBX G;  1CNU A;  3EG9 A;  4Z94 G;  3A5O S;  4LIZ A;  1Q8G A;  1JHW A;  3DAW B;  1WFS A;  5KYN A;  5KYU B;  2NUP B;  1YAG G;  3Q2B A;  1T2L A;  1T3X A;  2NUT A;  3A5M S;  5DD2 A;  4JD2 H;  5HVK D;  3EH2 A;  4PKI G;  4CBW G;  2LXX A;  2MV2 A;  5KYX A;  4KED A;  3EG9 B;  1RGI G;  1F7S A;  1WNJ A;  1C0G S;  5A1M A;  1PD1 A;  2NUT B;  4KEF A;  3TU5 B;  2FH1 A;  3EH1 A;  2FH2 A;  1MDU A;  1Q8X A;  2FH3 A;  2MOT A;  5HVK B;  1AK6 A;  5KYX B;  1KCQ A;  1COF A;  1YVN G;  2W0I A;  2D8B A;  2MP4 A;  1SVR A;  3FFK A;  1D0N A;  1PD0 A;  4PKG G;  2KVK A;  3FG6 A;  1VKK A;  1CFY A;  5FAF A;  1P8Z G;  4S10 C;  1WM4 A;  1NPH A;  3CI5 G;  1VFQ A;  3EGD A;  2FF6 G;  2VAC A;  2I2Q A;  1AK7 A;  3FG7 A;  3FFN A;  2LJ8 A;  2VIK A;  3L50 A;  2FH4 A;  5KYY A;  3CJB G;  1P8X A;  1M4J A;  4KEE A;  3EGD B;  3DA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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