1D1MA

Crystal structure of cro k56-[dgevk]-f58w mutant
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
65
structure length
65
Chain Sequence
MEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKDGEVKPWPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords LAMBDA CRO REPRESSOR
publication title The structural basis for enhanced stability and reduced DNA binding seen in engineered second-generation Cro monomers and dimers.
pubmed doi rcsb
source organism Enterobacteria phage lambda
total genus 17
structure length 65
sequence length 65
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09048 Cro Cro
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.240.10 Alpha Beta 2-Layer Sandwich CRO Repressor CRO Repressor 1d1mA00
2A63A 2CW1A 2ECSA 3ORCA 2ORCA 6CROA 2OVGA 1ORCA 1D1MA 1D1LA 5CROA 1COPD
chains in the Genus database with same CATH superfamily
2ECSA 4XR8F 2LJZA 6CROA 2OVGA 3C6FA 1D1LA 2CW1A 2FK4A 2LJXA 4GIZC 2A63A 2LJYA 2M3LA 1D1MA 1COPD 3ORCA 2ORCA 1ORCA 5CROA 1WU7A
chains in the Genus database with same CATH topology
2ECSA 4XR8F 2LJZA 6CROA 2OVGA 1D1LA 2CW1A 2FK4A 2LJXA 4GIZC 2A63A 2LJYA 2M3LA 1D1MA 1COPD 3ORCA 2ORCA 1ORCA 5CROA 1WU7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A63 A;  2CW1 A;  2ECS A;  3ORC A;  2ORC A;  6CRO A;  2OVG A;  1ORC A;  1D1M A;  1D1L A;  5CRO A;  1COP D; 
#chains in the Genus database with same CATH topology
 2ECS A;  4XR8 F;  2LJZ A;  6CRO A;  2OVG A;  3C6F A;  1D1L A;  2CW1 A;  2FK4 A;  2LJX A;  4GIZ C;  2A63 A;  2LJY A;  2M3L A;  1D1M A;  1COP D;  3ORC A;  2ORC A;  1ORC A;  5CRO A;  1WU7 A; 
#chains in the Genus database with same CATH homology
 2ECS A;  4XR8 F;  2LJZ A;  6CRO A;  2OVG A;  1D1L A;  2CW1 A;  2FK4 A;  2LJX A;  4GIZ C;  2A63 A;  2LJY A;  2M3L A;  1D1M A;  1COP D;  3ORC A;  2ORC A;  1ORC A;  5CRO A;  1WU7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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