1D2ZB

Three-dimensional structure of a complex between the death domains of pelle and tube
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
150
structure length
150
Chain Sequence
LSSKYSRNTELRRVEDNDIYRLAKILDENSCWRKLMSIIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDEAANRLPPDQSKSQMMIDEWKTSGKLNERPTVGVLLQLLVQAELFSAADFVALDFLNESTPARPVDGPGALISLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords DEATH DOMAIN OF PELLE
publication title Three-dimensional structure of a complex between the death domains of Pelle and Tube.
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 48
structure length 150
sequence length 150
chains with identical sequence D
ec nomenclature
pdb deposition date 1999-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF14786 Death_2 Tube Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1d2zB00
2A5YB 4M9XA 2MS8A 2YGSA 1YGOA 3MOPG 2VGQA 1DGNA 4O6XA 4LWDA 2N1FA 1D2ZA 2BBZA 4A2QA 1E41A 4EWIA 1N3KA 1A1WA 4UZ0A 4A2WA 4RHWA 3CRDA 2OF5H 2YU0A 4P4HI 1C15A 2MN4A 1CWWA 4JQWA 2DBFA 2G7RA 2NZ7A 4DWNA 3QF2A 2YQFA 2B1WA 1Z6TA 2BBRA 4I16A 2N97A 2F1SA 3J6JA 2IB1A 3MOPA 3EZQB 4O9FA 1DDFA 2M5VA 1A1ZA 1UCPA 2YVIA 2L9MA 4D8OA 2N83A 2D96A 3LQRA 1FADA 1E3YA 2NSNA 3KATA 4RHWE 1PN5A 1NGRA 4E9MA 3LQQA 4M9SA 4NQKA 4ZBWA 2N00A 4N1JA 1WH4A 4FH0A 2GF5A 4F42A 2MB9A 1D2ZB 2DBHA 2KM6A 4IZ5E 2N7ZA 2OF5A 2HM2Q 1WMGA 2LS7A 2LWEA 3YGSP 4IZ7B 3YGSC 4IZAB 2KN6A 1WXPA 4QOBA 2L6AA 4P4HA 2LWDA 2DBGA 2MPCA 4O9LA 2NAQA 3T6PA 4F44A 2N80A 3CL3A 4N1KA 1CY5A 4M9ZA 3MOPK 4N1LA 3J63A 4O7QA 3EZQA 2P1HA 2O71A 1ICHA 2A9IA 2MS7A 2DO9A 4JUPA 2DBDA
chains in the Genus database with same CATH superfamily
2A5YB 4M9XA 2MS8A 2YGSA 1YGOA 3MOPG 2VGQA 1DGNA 4O6XA 4LWDA 2N1FA 1D2ZA 2BBZA 4A2QA 1E41A 4EWIA 1N3KA 1A1WA 4UZ0A 4A2WA 4RHWA 3CRDA 2OF5H 2YU0A 4P4HI 1C15A 2MN4A 1CWWA 4JQWA 2DBFA 2G7RA 2NZ7A 4DWNA 3QF2A 2YQFA 2B1WA 1Z6TA 2BBRA 4I16A 2N97A 2F1SA 3J6JA 2IB1A 3MOPA 3EZQB 4O9FA 1DDFA 2M5VA 1A1ZA 1UCPA 2YVIA 2L9MA 4D8OA 2N83A 2D96A 3LQRA 1FADA 1E3YA 2NSNA 3KATA 4RHWE 1PN5A 1NGRA 4E9MA 3LQQA 4M9SA 4NQKA 4ZBWA 2N00A 4N1JA 1WH4A 2MJMA 4FH0A 2GF5A 4F42A 2MB9A 1D2ZB 2XV9A 2DBHA 2KM6A 4IZ5E 2N7ZA 2OF5A 2HM2Q 1WMGA 2LS7A 2LWEA 3YGSP 4IZ7B 3YGSC 4IZAB 2KN6A 1WXPA 4QOBA 2L6AA 4P4HA 2LWDA 2DBGA 2MPCA 4O9LA 2NAQA 3T6PA 4F44A 2N80A 3CL3A 4N1KA 1CY5A 4M9ZA 3MOPK 4N1LA 3J63A 4O7QA 3EZQA 2P1HA 2O71A 1ICHA 2A9IA 2MS7A 2DO9A 4JUPA 2DBDA
chains in the Genus database with same CATH topology
2A5YB 4M9XA 2MS8A 2YGSA 1YGOA 3MOPG 2VGQA 1DGNA 4O6XA 4LWDA 2N1FA 1D2ZA 2BBZA 4A2QA 1E41A 4EWIA 1N3KA 1A1WA 4UZ0A 4A2WA 4RHWA 3CRDA 2OF5H 2YU0A 4P4HI 1C15A 2MN4A 1CWWA 4JQWA 2DBFA 2G7RA 2NZ7A 4DWNA 3QF2A 2YQFA 2B1WA 1Z6TA 2BBRA 4I16A 2N97A 2F1SA 3J6JA 2IB1A 3MOPA 3EZQB 4O9FA 1DDFA 2M5VA 1A1ZA 1UCPA 2YVIA 2L9MA 4D8OA 2N83A 2D96A 3LQRA 1FADA 1E3YA 2NSNA 3KATA 4RHWE 1PN5A 1NGRA 4E9MA 3LQQA 4M9SA 4NQKA 4ZBWA 2N00A 4N1JA 1WH4A 2MJMA 4FH0A 2GF5A 4F42A 2MB9A 1D2ZB 2XV9A 2DBHA 2KM6A 4IZ5E 2N7ZA 2OF5A 2HM2Q 1WMGA 2LS7A 2LWEA 3YGSP 4IZ7B 3YGSC 4IZAB 2KN6A 1WXPA 4QOBA 2L6AA 4P4HA 2LWDA 2DBGA 2MPCA 4O9LA 2NAQA 3T6PA 4F44A 2N80A 3CL3A 4N1KA 1CY5A 4M9ZA 3MOPK 4N1LA 3J63A 4O7QA 3EZQA 2P1HA 2O71A 1ICHA 2A9IA 2MS7A 2DO9A 4JUPA 2DBDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A5Y B;  4M9X A;  2MS8 A;  2YGS A;  1YGO A;  3MOP G;  2VGQ A;  1DGN A;  4O6X A;  4LWD A;  2N1F A;  1D2Z A;  2BBZ A;  4A2Q A;  1E41 A;  4EWI A;  1N3K A;  1A1W A;  4UZ0 A;  4A2W A;  4RHW A;  3CRD A;  2OF5 H;  2YU0 A;  4P4H I;  1C15 A;  2MN4 A;  1CWW A;  4JQW A;  2DBF A;  2G7R A;  2NZ7 A;  4DWN A;  3QF2 A;  2YQF A;  2B1W A;  1Z6T A;  2BBR A;  4I16 A;  2N97 A;  2F1S A;  3J6J A;  2IB1 A;  3MOP A;  3EZQ B;  4O9F A;  1DDF A;  2M5V A;  1A1Z A;  1UCP A;  2YVI A;  2L9M A;  4D8O A;  2N83 A;  2D96 A;  3LQR A;  1FAD A;  1E3Y A;  2NSN A;  3KAT A;  4RHW E;  1PN5 A;  1NGR A;  4E9M A;  3LQQ A;  4M9S A;  4NQK A;  4ZBW A;  2N00 A;  4N1J A;  1WH4 A;  4FH0 A;  2GF5 A;  4F42 A;  2MB9 A;  1D2Z B;  2DBH A;  2KM6 A;  4IZ5 E;  2N7Z A;  2OF5 A;  2HM2 Q;  1WMG A;  2LS7 A;  2LWE A;  3YGS P;  4IZ7 B;  3YGS C;  4IZA B;  2KN6 A;  1WXP A;  4QOB A;  2L6A A;  4P4H A;  2LWD A;  2DBG A;  2MPC A;  4O9L A;  2NAQ A;  3T6P A;  4F44 A;  2N80 A;  3CL3 A;  4N1K A;  1CY5 A;  4M9Z A;  3MOP K;  4N1L A;  3J63 A;  4O7Q A;  3EZQ A;  2P1H A;  2O71 A;  1ICH A;  2A9I A;  2MS7 A;  2DO9 A;  4JUP A;  2DBD A; 
#chains in the Genus database with same CATH topology
 2A5Y B;  4M9X A;  2MS8 A;  2YGS A;  1YGO A;  3MOP G;  2VGQ A;  1DGN A;  4O6X A;  4LWD A;  2N1F A;  1D2Z A;  2BBZ A;  4A2Q A;  1E41 A;  4EWI A;  1N3K A;  1A1W A;  4UZ0 A;  4A2W A;  4RHW A;  3CRD A;  2OF5 H;  2YU0 A;  4P4H I;  1C15 A;  2MN4 A;  1CWW A;  4JQW A;  2DBF A;  2G7R A;  2NZ7 A;  4DWN A;  3QF2 A;  2YQF A;  2B1W A;  1Z6T A;  2BBR A;  4I16 A;  2N97 A;  2F1S A;  3J6J A;  2IB1 A;  3MOP A;  3EZQ B;  4O9F A;  1DDF A;  2M5V A;  1A1Z A;  1UCP A;  2YVI A;  2L9M A;  4D8O A;  2N83 A;  2D96 A;  3LQR A;  1FAD A;  1E3Y A;  2NSN A;  3KAT A;  4RHW E;  1PN5 A;  1NGR A;  4E9M A;  3LQQ A;  4M9S A;  4NQK A;  4ZBW A;  2N00 A;  4N1J A;  1WH4 A;  2MJM A;  4FH0 A;  2GF5 A;  4F42 A;  2MB9 A;  1D2Z B;  2XV9 A;  2DBH A;  2KM6 A;  4IZ5 E;  2N7Z A;  2OF5 A;  2HM2 Q;  1WMG A;  2LS7 A;  2LWE A;  3YGS P;  4IZ7 B;  3YGS C;  4IZA B;  2KN6 A;  1WXP A;  4QOB A;  2L6A A;  4P4H A;  2LWD A;  2DBG A;  2MPC A;  4O9L A;  2NAQ A;  3T6P A;  4F44 A;  2N80 A;  3CL3 A;  4N1K A;  1CY5 A;  4M9Z A;  3MOP K;  4N1L A;  3J63 A;  4O7Q A;  3EZQ A;  2P1H A;  2O71 A;  1ICH A;  2A9I A;  2MS7 A;  2DO9 A;  4JUP A;  2DBD A; 
#chains in the Genus database with same CATH homology
 2A5Y B;  4M9X A;  2MS8 A;  2YGS A;  1YGO A;  3MOP G;  2VGQ A;  1DGN A;  4O6X A;  4LWD A;  2N1F A;  1D2Z A;  2BBZ A;  4A2Q A;  1E41 A;  4EWI A;  1N3K A;  1A1W A;  4UZ0 A;  4A2W A;  4RHW A;  3CRD A;  2OF5 H;  2YU0 A;  4P4H I;  1C15 A;  2MN4 A;  1CWW A;  4JQW A;  2DBF A;  2G7R A;  2NZ7 A;  4DWN A;  3QF2 A;  2YQF A;  2B1W A;  1Z6T A;  2BBR A;  4I16 A;  2N97 A;  2F1S A;  3J6J A;  2IB1 A;  3MOP A;  3EZQ B;  4O9F A;  1DDF A;  2M5V A;  1A1Z A;  1UCP A;  2YVI A;  2L9M A;  4D8O A;  2N83 A;  2D96 A;  3LQR A;  1FAD A;  1E3Y A;  2NSN A;  3KAT A;  4RHW E;  1PN5 A;  1NGR A;  4E9M A;  3LQQ A;  4M9S A;  4NQK A;  4ZBW A;  2N00 A;  4N1J A;  1WH4 A;  2MJM A;  4FH0 A;  2GF5 A;  4F42 A;  2MB9 A;  1D2Z B;  2XV9 A;  2DBH A;  2KM6 A;  4IZ5 E;  2N7Z A;  2OF5 A;  2HM2 Q;  1WMG A;  2LS7 A;  2LWE A;  3YGS P;  4IZ7 B;  3YGS C;  4IZA B;  2KN6 A;  1WXP A;  4QOB A;  2L6A A;  4P4H A;  2LWD A;  2DBG A;  2MPC A;  4O9L A;  2NAQ A;  3T6P A;  4F44 A;  2N80 A;  3CL3 A;  4N1K A;  1CY5 A;  4M9Z A;  3MOP K;  4N1L A;  3J63 A;  4O7Q A;  3EZQ A;  2P1H A;  2O71 A;  1ICH A;  2A9I A;  2MS7 A;  2DO9 A;  4JUP A;  2DBD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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