1D66A

Dna recognition by gal4: structure of a protein/dna complex
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
57
structure length
57
Chain Sequence
EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEVESRLERL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title DNA recognition by GAL4: structure of a protein-DNA complex.
pubmed doi rcsb
molecule tags Transcription/dna
source organism Saccharomyces cerevisiae
molecule keywords DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C
total genus 11
structure length 57
sequence length 57
chains with identical sequence B
ec nomenclature
pdb deposition date 1992-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.240.10 Few Secondary Structures Irregular CD2-Gal4 Zn(2)-C6 fungal-type DNA-binding domain 1d66A00
1D66A 1PYIA 2ER8A 1PYCA 1AW6A 1HWTC 3COQA 2ALCA 1F4SP 1AJYA 1QP9A 3ALCA 2ERGA 2EREA 2HAPC 1F5EP 1ZMEC
chains in the Genus database with same CATH superfamily
1D66A 1PYIA 2ER8A 1PYCA 1AW6A 1HWTC 3COQA 2ALCA 1F4SP 1AJYA 1QP9A 3ALCA 2ERGA 2EREA 2HAPC 1F5EP 1ZMEC
chains in the Genus database with same CATH topology
1D66A 1PYIA 2ER8A 1PYCA 1AW6A 1HWTC 3COQA 2ALCA 1F4SP 1AJYA 1QP9A 3ALCA 2ERGA 2EREA 2HAPC 1F5EP 1ZMEC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D66 A;  1PYI A;  2ER8 A;  1PYC A;  1AW6 A;  1HWT C;  3COQ A;  2ALC A;  1F4S P;  1AJY A;  1QP9 A;  3ALC A;  2ERG A;  2ERE A;  2HAP C;  1F5E P;  1ZME C; 
#chains in the Genus database with same CATH topology
 1D66 A;  1PYI A;  2ER8 A;  1PYC A;  1AW6 A;  1HWT C;  3COQ A;  2ALC A;  1F4S P;  1AJY A;  1QP9 A;  3ALC A;  2ERG A;  2ERE A;  2HAP C;  1F5E P;  1ZME C; 
#chains in the Genus database with same CATH homology
 1D66 A;  1PYI A;  2ER8 A;  1PYC A;  1AW6 A;  1HWT C;  3COQ A;  2ALC A;  1F4S P;  1AJY A;  1QP9 A;  3ALC A;  2ERG A;  2ERE A;  2HAP C;  1F5E P;  1ZME C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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